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* [svn-r22701] Purpose: Jonathan Kim2012-08-201-0/+3
| | | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Merged from HDF5 trunk r22684 and r22691. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), cmake (jam)
* [svn-r22671] Snapshot version 1.8 release 10 (snap7)HDF Tester2012-08-131-1/+1
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* [svn-r22630] Snapshot version 1.8 release 10 (snap6)Larry Knox2012-08-061-1/+1
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* [svn-r22621] Purpose:Jonathan Kim2012-08-021-0/+3
| | | | | | | | | | | | | | | | HDFFV-8107 testh5diff will fail if build/test in HDF5 source tree Description: This is sub-task for "HDFFV-8105 testh5diff.sh uses the wrong operator (-a) in an if statement." From the HDFFV-8105's update, h5diff test failed if build&test is performed in HDF5 source tree because 'cp' try to copy test files to self dir. It's addressed by skipping if cp's src dir and dest dir is same. Also this applied for all other tools under src/tools dir. No change to the CMakeLists.txt files because CMake cautions/demands that in-source builds be avoided. Merged from HDF5 trunk r22617. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), some manual tests as well
* [svn-r22619] Jonathan Kim2012-08-021-0/+4
| | | | | | | | | | | | | | | Purpose: HDFFV-8003 - ph5diff (parallel h5diff): daily test failure on ember intermittently during non comparable test file comparison HDFFV-7755 - parallel h5diff : hanging on koala intermittently during non comparable test file comparison Description: non-comparable test intermittently hung on koala and ember, but not on jam. it didn't occur until -np reaches 4 or bigger. it occurred once out of many repeated attempts of the same test. There was a incorrectly (mistakenly?) duplicated code in MPI section which caused such hang in a certain condition. The test used more processes than other tests, which increased chance to trigger more undone processes, and such process could enter the incorrect code section and wait for wrong pair of send. it explains why it occurred intermittently according to machine condition and using a certain feature. Removed incorrect code which blocked correct code. Merged from HDF5 trunk r22618. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), some manually repeated test performed in parallel
* [svn-r22595] Bug fix: HDFFV-8105Albert Cheng2012-07-221-0/+3
| | | | | | | | | | | | | | Description: The test command in COPY_TESTFILES_TO_TESTDIR used the wrong operator -a which means and. It is not sufficient to test mere existence as $tstfile could have been a directory or other non-file things. If the file is not readable, the $CP command would fail but its return code was not checked. Solution: Get rid of the test command and go ahead to $CP it and then check its returned code and report errors if detected. Tested; committested.
* [svn-r22571] HDFFV-7784,-8095,7936 merge from trunkAllen Byrne2012-07-131-1/+1
| | | | Tested: local linux with cmake
* [svn-r22524] Snapshot version 1.8 release 10 (snap6)Larry Knox2012-07-091-1/+1
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* [svn-r22488] Snapshot version 1.8 release 10 (snap4)HDF Tester2012-06-251-1/+1
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* [svn-r22483] Maintenance:Elena Pourmal2012-06-231-1/+4
| | | | | | | | - Fixed a typo in return value of the nh5dread_f_c function ( was 1 instead of 0 on success); fixed the return value to make it consistent with other Fortran functions; cleaned the code from debug statements. Platforms tested: jam with GNU and Intel compilers, fortran 2003 feature.
* [svn-r22459] I added an item in the known problem section for the data ↵Raymond Lu2012-06-121-0/+7
| | | | conversion problem on Mac Lion.
* [svn-r22449] Snapshot version 1.8 release 10 (snap3)HDF Tester2012-06-101-1/+1
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* [svn-r22428] Snapshot version 1.8 release 10 (snap2)HDF Tester2012-06-041-1/+1
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* [svn-r22414] Snapshot version 1.8 release 10 (snap1)HDF Tester2012-05-281-1/+1
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* [svn-r22383] Snapshot version 1.8 release 10 (snap0)HDF Tester2012-05-211-1/+1
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* [svn-r22376] add a test to expose a memory leak when adding/removing the ↵Mohamad Chaarawi2012-05-181-1/+2
| | | | | | same property in property list multiple times. fix that bug.
* [svn-r22362] Update to 1.8.9 releaseAllen Byrne2012-05-143-1770/+10
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* [svn-r22355] Correct the windows references in the configurations tested sectionAllen Byrne2012-05-111-12/+8
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* [svn-r22333] Removed install instructions for unsupported Visual Studio ↵Dana Robinson2012-05-022-20/+0
| | | | versions.
* [svn-r22320] Purpose:Jonathan Kim2012-04-271-1/+4
| | | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. This merged from HDF5 trunk r22319. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22309] Fixed a typoDana Robinson2012-04-201-1/+1
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* [svn-r22307] Removed references to ancient platforms and compilers from the ↵Dana Robinson2012-04-201-82/+15
| | | | INSTALL document.
* [svn-r22282] Issue 7934 - The data sieve buffer size was for all the ↵Raymond Lu2012-04-121-2/+6
| | | | | | | | | | | | datasets in the file. It could waste memory if any dataset size is smaller than the sieve buffer size. Now the library picks the smaller one between the dataset size and the sieve buffer size from the file access property. (There is no change to hl/ and fortran/ directories. They were property changes during the merge from the trunk) Tested on jam, koala, and ostrich.
* [svn-r22275] Clear up examples vs applications instances and add minimum file.Allen Byrne2012-04-111-15/+36
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* [svn-r22269] - Clear out RELEASE.txt ahead of 1.8.10 changesMike McGreevy2012-04-092-154/+35
| | | | | | - Update version references in RELEASE.txt - Add reminder to HISTORY-1_8.txt that it needs the completed RELEASE.txt from the 1.8.9 branch when it's done
* [svn-r22268] Update 1.8 branch version to 1.8.10-snap0Mike McGreevy2012-04-091-1/+1
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* [svn-r22262] Update version number in examplesAllen Byrne2012-04-091-4/+4
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* [svn-r22261] Update list of CMake optionsAllen Byrne2012-04-091-45/+62
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* [svn-r22259] Snapshot version 1.8 release 9 (snap16)HDF Tester2012-04-091-1/+1
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* [svn-r22256] Added note for 1.8.9: Autotools configure problem and cmake optionsAllen Byrne2012-04-061-2/+8
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* [svn-r22252] Fixed a bug in H5Ocopy(): When copying an opened object, call ↵Vailin Choi2012-04-051-0/+3
| | | | | | | | | | | | | | | | | | | | | the object's flush class action to ensure that cached data is flushed so that H5Ocopy will get the correct data. (HDFFV-7853) this line, and those below, will be ignored-- _M . M test/objcopy.c M src/H5Ocopy.c M src/H5Goh.c M src/H5Dint.c M src/H5Opkg.h M src/H5Doh.c M src/H5Toh.c M src/H5O.c M src/H5Dpkg.h M release_docs/RELEASE.txt _M fortran
* [svn-r22234] Snapshot version 1.8 release 9 (snap15)HDF Tester2012-04-021-1/+1
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* [svn-r22217] Description:Quincey Koziol2012-03-311-0/+5
| | | | Added note about new '-S' option to h5stat and '-M' option to h5repack.
* [svn-r22215] Description:Quincey Koziol2012-03-311-16/+26
| | | | | | | | | | | Bring r22171 from trunk to 1.8 branch: Bring "merge committed datatypes during H5Ocopy" feature from branch to trunk. (Also has some minor bugfixes with it) Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* [svn-r22212] Brought r22211 from the trunkDana Robinson2012-03-301-0/+2
| | | | | | | | | | | STDIO VFD fixes (HDFFV-7917). Mainly Windows correctness issues (propagated from the SEC2 VFD and the old Windows VFD) and issues where large files are accessed. Tested on: 64-bit Mac OS-X 64-bit Windows 7 jam koala ostrich
* [svn-r22210] Purpose:Mike McGreevy2012-03-301-0/+3
| | | | | | | | | | | Merge fix for HDFFV-944 (r22149) from trunk to hdf5_1_8. (Also reran bin/reconfigure which updated trace information for the two new MPI functions for getting/setting atomicity in src/H5Fmpi.c) Tested: h5committest
* [svn-r22208] Purpose:Mike McGreevy2012-03-301-0/+3
| | | | | | Merge fix for HDFFV-398 (r22146 and r22147) from trunk to hdf5_1_8. Tested: h5committest
* [svn-r22207] Added new release text for new C/Fortran high level APIs, new ↵Scot Breitenfeld2012-03-301-3/+10
| | | | | | fortran APIs and bug fixes.
* [svn-r22188] Purpose:Jonathan Kim2012-03-291-0/+4
| | | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Merged from HDF5 trunk 22176. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r22174] Port r22173 from trunk to 1.8 branchNeil Fortner2012-03-281-0/+2
| | | | | | | | | | | | | | | | | | Purpose: Fix HDFFV-7762 Description: When copying an object with attribute creation order tracked, the attribute creation order was not copied correctly to the destination file, causing an error if the creation order was also indexed (due to attempting to insert duplicate keys) or incorrect creation orders otherwise. Fixed to copy the creation order correctly. Also fixed the attribute character set not being copied, and fixed an issue where an attribute opened with H5Aopen (or similar, but not by_idx), from an object using the latest format but without creation order being tracked, would always report the creation order as 0 (and marked as valid). Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22159] Propagated Windows and POSIX correctness fixes from the SEC2 ↵Dana Robinson2012-03-271-2/+6
| | | | | | | | | | | VFD to the core VFD. This mainly affects backing store I/O and fixes a bug on Windows where files > 2 GB could not be opened. Fixes/completes: HDFFV-7603 (Can't open files > 2 GB on Windows) HDFFV-7916 (Windows/POSIX correctness fixes) Tested on: jam, ostrich, koala, loyalty, 64-bit Mac OS-X Lion, 64-bit Windows 7
* [svn-r22158] Updated RELEASE.txt concerning HDFFV-7769 (changes to the ↵Dana Robinson2012-03-271-0/+5
| | | | istore test to keep CTest from timing out when sparse files are not supported).
* [svn-r22157] Merge the atomicity routines from the trunkMohamad Chaarawi2012-03-271-1/+4
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* [svn-r22156] Issue 7785 - Writing or reading many small chunks ran out of ↵Raymond Lu2012-03-271-0/+4
| | | | | | | | memory and caused seg fault. I added checks in two places to make sure the library returns error stack when it fails to allocate memory. I didn't add any test to the test suite since there is no good way to test it. But I tested and verified the error stack by hand. Tested on jam - this is a merge from the trunk.
* [svn-r22155] Update windows platformsAllen Byrne2012-03-271-8/+6
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* [svn-r22145] #Issue 7922 - H5Pset_data_transform had seg fault with some ↵Raymond Lu2012-03-261-0/+3
| | | | | | | | | operations like x*-100. The parser mistaked "-" as substraction. I fixed it and also fixed another problem with some special cases like 100-x and 2/x. This is a merge from the trunk. Tested on jam, koala, and ostrich.
* [svn-r22141] Snapshot version 1.8 release 9 (snap14)HDF Tester2012-03-261-1/+1
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* [svn-r22124] Purpose:Jonathan Kim2012-03-221-0/+10
| | | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22106] Update linux VM version infoAllen Byrne2012-03-211-14/+14
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* [svn-r22104] Added cross platform example text for new h5dump file optionAllen Byrne2012-03-211-1/+2
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