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* [svn-r21766] Update Linux VM section to match 1.8.8Allen Byrne2011-11-161-17/+17
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* [svn-r21765] Issue 7618 - the library had seg fault when it tried to shrink ↵Raymond Lu2011-11-151-0/+3
| | | | | | the size of compound data type through H5Tset_size immediately after the type was created. I fixed it in this commit. I'm bringing the fix from the trunk. The only files being change are test/dtypes.c, src/H5T.c, src/H5Tconv.c, and release_docs/RELEASE.txt. All others are property changes. Tested on jam, koala, and linew.
* [svn-r21760] Copy finished RELEASE.txt from the 1.8.8 branchMike McGreevy2011-11-151-2/+715
| | | | to 1.8's HISTORY-1_8.txt file.
* [svn-r21718] Issue 7618 - the library had seg fault when it tried to shrink ↵Raymond Lu2011-11-041-1/+3
| | | | | | | | the size of compound data type through H5Tset_size immedia tely after the type was created. I'm bringing the fix from the trunk that I committed a while ago. My real changes are in test/dtypes.c, src/H5T.c, and release_docs/RELEASE.txt. All other changes are property changes. Tested on jam. But I tested the same fix in the trunk on jam, koala, and linew.
* [svn-r21717] Update cmake configurationAllen Byrne2011-11-041-2/+9
| | | | | | | Update cmake to generate source folders in VS Brought parallel changes from trunk Tested: local linux
* [svn-r21639] - Clear out RELEASE.txt in preparation for 1.8.9 release changes.Mike McGreevy2011-10-212-228/+29
| | | | | | - Update version references in RELEASE.txt - Add reminder to HISTORY-1_8.txt that it needs the completed RELEASE.txt from the 1.8.8 branch when it's done.
* [svn-r21638] Update 1.8 branch version to 1.8.9-snap0Mike McGreevy2011-10-211-1/+1
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* [svn-r21618] Description:Quincey Koziol2011-10-201-0/+3
| | | | | | | | | | | | Bring r21617 from trunk to 1.8 branch: Recalculate the size of destination attribute message when the source and destination versions are different during an object copy operation. (Jira: HDFF-7718) Tested on: Mac OS X/32 10.7.2 (amazon) w/debug (h5committested on trunk)
* [svn-r21616] Updates to Fortran 2003 constants.Scot Breitenfeld2011-10-201-1/+5
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* [svn-r21614] Added new fortran, HL, fortran HL changes.Scot Breitenfeld2011-10-201-1/+18
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* [svn-r21612] I put an item about the H5LTdtype_to_text bug (7701).Raymond Lu2011-10-191-1/+2
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* [svn-r21594] Add CMake option to disable packaging component: needed to ↵Allen Byrne2011-10-172-0/+7
| | | | | | avoid configuration warning when using Visual Studio Express versions on windows. Tested: Windows
* [svn-r21592] Purpose:Mike McGreevy2011-10-171-48/+54
| | | | | | | | | | | Minor cleanup of RELEASE.txt: - formatting - update platforms tested & known issues as of 1.8.7 release (i.e. changes made to 1_8_7's RELEASE.txt never merged to 1_8). (these will further be updated prior to 1.8.8 release). Tested: - release doc only, none needed.
* [svn-r21588] Snapshot version 1.8 release 8 (snap18)HDF Tester2011-10-171-1/+1
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* [svn-r21576] Maintenance: Added F2003 info Elena Pourmal2011-10-141-14/+50
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* [svn-r21567] Updated RELEASE.txtDana Robinson2011-10-141-6/+37
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* [svn-r21566] Description:Quincey Koziol2011-10-141-0/+3
| | | | | | | | | | | | | | Bring r21561 from trunk back to 1.8 branch: Correct error in loading local heap prefix & data block from the file. Sometimes the local heap's prefix could be loaded before the data block (e.g. using H5Oget_info), but then when the data block was loaded later, the free list information would get lost, causing the heap's size to grow larger than necessary. This is Jira bug #HDFFV-7767 Tested on: Mac OS X/32 10.7.2 (amazon) w/debug (h5committest coming up)
* [svn-r21565] Update RELEASE.txt for the fix checked in yesterday for HDFFV-7640.Vailin Choi2011-10-141-0/+4
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* [svn-r21557] Port r21556 to 1.8 branchNeil Fortner2011-10-141-0/+3
| | | | | | | | | | | | | | | Purpose: Fix bug in H5Ocopy Description: H5Ocopy could get confused when copying a named datatype containing an attribute which used that named datatype as its datatype. This happened because H5Ocopy would recurse into the attribute's datatype before the object the attribute was in was fully copied (i.e. before the "post-copy" pass). Modified H5Ocopy to avoid recursing before the post-copy step in this case. Required many changes, including to how non-committed shared messages are copied. Tested: jam, koala, heiwa (h5committest); durandal
* [svn-r21554] Maintenance: Added entry for the Fortran DS wrappersElena Pourmal2011-10-131-1/+11
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* [svn-r21551] Maintenance: Addressed HDFFV-915 - investigate if H5open and ↵Elena Pourmal2011-10-131-1/+4
| | | | | | | | | | | | | H5close are needed in the corresponding Fortran wrappers. Solutions: The calls were not needed and were removed from the C stubs h5open_c and h5close_c for the correspnding Fortran subroutines h5open_f and h5close_f. Platforms tested: jam with gcc and gfortran, PGI and Intel koala with PGI and Intel linew with the standard Sun compilers
* [svn-r21547] Updated svnprops on many files, mainly for EOL issues.Dana Robinson2011-10-137-263/+263
| | | | No testing since there are no code changes.
* [svn-r21533] Description:Quincey Koziol2011-10-121-1/+3
| | | | | | | | | Bring r21442 and r21529 from trunk to 1.8 branch: Add new API routines for querying if collective raw data I/O was actually performed collectively. Tested: Linux/32 2.6 (jam) (h5committested on trunk)
* [svn-r21527] Updated cygwin versionsAllen Byrne2011-10-121-2/+2
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* [svn-r21524] Reverts 20920 (HDFFV-7579 fix) (this is 20913/21 from the trunk)Dana Robinson2011-10-111-4/+0
| | | | | | This change reverts the HDFFV-7579 fix while we more carefully consider enum conversions as a part of the h5compare work. Tested on jam, Windows 7 and linew.
* [svn-r21503] Edited for language. Did not edit "Known Problems" Mark Evans2011-10-101-56/+59
| | | | or "Platforms Tested" sections.
* [svn-r21500] Snapshot version 1.8 release 8 (snap17)HDF Tester2011-10-101-1/+1
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* [svn-r21479] Merge revision 21101 from trunk to 1.8 branch:Mike McGreevy2011-10-051-1/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-7639 Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: Jam, h5committest, Ember
* [svn-r21470] Updated with the change of Windows platform switched back to ↵Albert Cheng2011-10-041-0/+3
| | | | | | use SEC2 as the default VFD.
* [svn-r21444] Snapshot version 1.8 release 8 (snap16)HDF Tester2011-10-031-1/+1
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* [svn-r21438] Added listing of all cmake options availableAllen Byrne2011-09-301-0/+47
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* [svn-r21416] Snapshot version 1.8 release 8 (snap15)HDF Tester2011-09-261-1/+1
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* [svn-r21404] Purpose:Jonathan Kim2011-09-211-0/+2
| | | | | | | | | | | | | | | | | | | | | | HDFFV-7693 - h5diff produces different behavior between versions: 1.8.3 and 1.8.6 Description: There were two issues on this. One was not displaying all the comparable objects if non-comparable object/attribute exist and compared before comparables ones. This issue occurred after 1.8.4 release. This is the issue from user. The other issue was not displaying all the comparable attributes, if non-comparable object/attribute exist and compared ahead. This issue were exist even before 1.8.4 release. So it's possible some attribute comparison may have not displayed correctly in the past, if non-comparable data were exist in common object. Fixed h5diff to display all the comparable object and attribute regardless of non-comparables. Merged from HDF5 trunk r21396 and r21397. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Windows)
* [svn-r21400] Purpose:Jonathan Kim2011-09-201-0/+4
| | | | | | | | | | | | | HDFFV-5932 - h5repack breaks files with dimension scales Description: - Fixed h5repack to update values of references(object and region) of attributes in h5repack for 1) references, 2) ARRAY of references, 3) VLEN of references, and 4) COMPOUND of references. - Merged from HDF5 trunk 21393, 21382, 21386, 21389. (support Peter) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE)
* [svn-r21399] Snapshot version 1.8 release 8 (snap14)HDF Tester2011-09-191-1/+1
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* [svn-r21376] JIRA-HDFFV-2748: Relplace WIN32 macros in source. New ↵Allen Byrne2011-09-121-0/+3
| | | | | | | | H5_HAVE_WIN32_API and H5_HAVE_VISUAL_STUDIO defines only need to be set on windows. Autotools configure is not affected. Trunk passed for a week and cmake branch has been in place > 3 weeks. Tested: local linux
* [svn-r21375] Snapshot version 1.8 release 8 (snap13)HDF Tester2011-09-121-1/+1
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* [svn-r21368] Purpose:Jonathan Kim2011-09-061-0/+4
| | | | | | | | | | | HDFFV-7712 - h5diff: segfault over combinations of complex container types (compound, array, vlen) Description: - Fixed segfault over dataset with container types (array,lven) with multiple nested compound types. (ex: compound->array->compound, compound->vlen->compound) - Merged from HDF5 trunk r21358. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21361] Snapshot version 1.8 release 8 (snap12)HDF Tester2011-09-051-1/+1
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* [svn-r21356] Issue 7674 - CLANG compiler complained about the line (about 800):Raymond Lu2011-09-021-0/+9
| | | | | | | | | | tempint = (tempint >> packed_data_offset) & packed_data_mask; The right shift may cause undefined behavior if PACKED_DATA_OFFSET is 32-bit or more. For every kind of native integers, I changed the code to make it zero if PACKED_DATA_OFFSET is greater than or equal to the size of integer. Tested on jam and on MacOS with CLANG compiler.
* [svn-r21344] Purpose:Jonathan Kim2011-08-311-0/+2
| | | | | | | | | | | | HDFFV-2511 - GMQS: h5repack: some tests failed in -q32 AIX Description: - Merged from HDF5 trunk r21265 - Added macro to handle failure in H5Dread/write when memory allocation failed inside the library (XCAO) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r21330] Snapshot version 1.8 release 8 (snap11)HDF Tester2011-08-291-1/+1
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* [svn-r21318] Correct zlib references, zlib svn no longer has src folderAllen Byrne2011-08-261-2/+2
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* [svn-r21314] Merge of 21302 (bin/trace bugfix) from trunk. Tested on jam ↵Dana Robinson2011-08-251-3/+9
| | | | (minor change).
* [svn-r21309] Add NSIS silent install optionAllen Byrne2011-08-251-0/+10
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* [svn-r21293] Moved Tools recent fixes (HDFFV-7649 and HDFFV-7659) ↵Jonathan Kim2011-08-221-4/+6
| | | | descriptions to correct section.
* [svn-r21291] I moved 2 items from the new feature of parallel library ↵Raymond Lu2011-08-221-4/+4
| | | | | | | category to the new feature of library category, which is an appropriate place. No test is needed.
* [svn-r21278] Document fix for bug HDFFV-7641.Albert Cheng2011-08-221-0/+2
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* [svn-r21276] Snapshot version 1.8 release 8 (snap10)HDF Tester2011-08-221-1/+1
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* [svn-r21264] Purpose:Jonathan Kim2011-08-191-0/+6
| | | | | | | | | | | | | | | | | | | | | Work for: HDFFV-7515 - GMQS: h5unjam - incorrect help page and should display when no file is given. and HDFFV-5941 - h5jam: specifying a user block file with a proper HDF5 magic number will result in a corrupted HDF5 file. Description: - Merged from HDF5 trunk r21236, - Revised command help pages of h5jam and h5unjam. The descriptions were not up to date and some were missing. (HDFFV-7515) - Fixed h5jam not to allow specifying an HDF5 formatted file as input file for -u (user block file) option, because the original HDF5 file will not be accessible if allows. (HDFFV-5941) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake (jam, win)
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