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* [svn-r20409] Corrected text in INSTALL file: there is no --enable-szlib ↵Larry Knox2011-04-041-1/+1
| | | | configure option, it should be --with-szlib=.
* [svn-r20385] Purpose:Jonathan Kim2011-03-311-0/+4
| | | | | | | | | | | | | | | | | | | Bug 2182 - h5ls and h5dump: update to use --enable-error-stack among tools, also update related descriptions Description: Merged from HDF5 trunk r20378 and r20379 Decided to use --enable-error-stack long option name only to display error stack messages from HDF5 lib among tools. Updated to unify option name to '--enable-error-stack' for printing HDF5 error stack messages for HDF5 tools. h5ls and h5dump for now. For h5ls, this replaces "-e/--errors" option, which is deprecated. For h5dump, remove -E from help page and RM , which was added by mistake before release1.8.7. Help page and RM got updated. Updated test case. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20369] Purpose:Jonathan Kim2011-03-291-0/+3
| | | | | | | | | | | | | | | | | Fixed Bug 2184 - GMQS: h5diff - incorrect calculation code for --use-system-epsilon option Description: Fixed h5diff for --use-system-epsilon option: the calculation changed from ( |a - b| / b ) to ( |a - b| ). This was decided for better performance and was corrected only in HDF5 trunk, so 1.8 got updated. Also comments for equal_XXX() function were updated correctly. Also help page and RM got updated correctly. Also add test cases for testing the differences w/wo the option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r20367] Added BZ1725 reference corresponding to r20365Allen Byrne2011-03-291-0/+6
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* [svn-r20350] Purpose:Jonathan Kim2011-03-251-0/+4
| | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Merged from HDF5 trunk r20334. This is related to previous checkin r20299. Add help page update for verbose option level feature, which displays useful information about attribute difference with -v1, --verbose=1 -v2 or --verbose=2 option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20301] brought revisions 19868:20300 from the 1.8.6_vms branch to the ↵Raymond Lu2011-03-231-2/+2
| | | | 1.8 branch
* [svn-r20299] Purpose:Jonathan Kim2011-03-231-0/+4
| | | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Merged from HDF5 trunk r20294 Previously h5diff compared attributes correctly only when two objects have the same number of attributes and attribute names are identical. Also didn't display useful information about attribute difference. This fix covers all other cases. This fixes both issues. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20288] Purpose:Jonathan Kim2011-03-221-0/+4
| | | | | | | | | | | | | | | Fixed Bug 2216 - GMQS: h5diff - memory leak when compares vlen string in dataset or attributes Description: Merged from HDF5 trunk r20266, r20270 and r20285. Test for dataset : valgrind --leak-check=full ./h5diff -v h5diff_dset1.h5 h5diff_dset2.h5 /g1/VLstring Test for attr : valgrind --leak-check=full ./h5diff h5diff_attr1.h5 h5diff_attr2.h5 Both test cases are in testing script. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20286] Purpose:Jonathan Kim2011-03-211-0/+2
| | | | | | | | | | | | | | | | | Fixed Bug 2214 - GMQS: h5diff - memory leak when accessing symbolic links with --follow-symlinks option and the target type is UDLink or some error occurs Description: Merged from HDF5 trunk r20274. Memory leaks occurred when accessing symbolic links with --follow-symlink option. Test cases are in testing script. (400 - 456, 501 - 518) An example test : valgrind --leak-check=full h5diff --follow-symlinks -v h5diff_softlinks.h5 h5diff_softlinks.h5 Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20246] Purpose:Jonathan Kim2011-03-141-0/+2
| | | | | | | | | | | Fixed Bug 1904 - h5ls : usage of '-a' option is not clear to display expected output Description: Merged from HDF5 trunk r20231. Fixed incorrect content and improved help page for -a option of h5ls. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
* [svn-r20244] Allen Byrne2011-03-141-1/+1
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* [svn-r20227] Entered known problem of --with-mpe does not work with mpich2.Albert Cheng2011-03-101-0/+2
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* [svn-r20225] Add enable-error-stack option to new features-tools section.Allen Byrne2011-03-101-1/+4
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* [svn-r20220] Description:Quincey Koziol2011-03-101-0/+3
| | | | | | | | | | | | | | | | | | | Bring r20219 from trunk to 1.8 branch: Tell the VFL flush call that the file will be closing, allowing the VFDs to avoid sync'ing the file (particularly valuable in parallel). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
* [svn-r20210] Purpose:Jonathan Kim2011-03-091-0/+3
| | | | | | | | | | | | | | Fix Bug 2120 - h5copy: improve to copy an object into same HDF file Description: Merged from HDF5 trunk r20203. Before the fix users can't copy an object (dataset or group) with different name if input file (-i) and output file (-o) is same. This feature would be useful to clone any object with different name and reuse contents. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake (jam)
* [svn-r20198] Purpose:Jonathan Kim2011-03-081-0/+3
| | | | | | | | | | | | | Fixing Bug 2161 - GMQS: h5dump - only on Windows, skip displaying a data value every a certain lines in array type dataset Description: Merged from HDF5 trunk r20188. Fixed h5dump for skipping some values for long array type dataset on Windows. This issue only occurred on Windows due to the different return behavior from _vsnprintf() funtion. Tested: Windows, jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20193] Snapshot version 1.8 release 7 (snap1)Larry Knox2011-03-071-1/+1
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* [svn-r20133] Purpose:Jonathan Kim2011-02-211-0/+3
| | | | | | | | | | | | | | | | Fixing Bug 2092 - h5dump does not display index for a dataset Description: Merged from HDF5 trunk r20108 and r20132. h5dump skip displaying array indices every certain number when the array type dataset is relatively big. The certain number varies according to the size of each array. This checkin fix the skipping array indices problem. This fix also correct indentation of the dataset data output. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20125] Bug 1586 - the datatype handler created with H5Tencode/decode ↵Raymond Lu2011-02-181-1/+3
| | | | | | had the reference count 0. I fixed it by changing the APP_REF parameter of H5I_register from FALSE to TRUE and added a test case in dtypes.c. The changes to configture.in, tools/misc, tools/lib, config, c++/test, Makefile.am, and fortran are only property changes when I merged from the trunk. Tested on jam. But I tested the same fix in the trunk with h5committest.
* [svn-r20114] Merge r20112 (open_file_pool) into 1_8 branch.Neil Fortner2011-02-171-0/+4
| | | | Tested: jam (open_file_pool branch tested with h5committest)
* [svn-r20102] Update text file with references to examples.zip file.Allen Byrne2011-02-141-1/+2
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* [svn-r20101] Description: Mike McGreevy2011-02-142-89/+749
| | | | | | | Copy 1.8.6 RELEASE.txt into HISTORY-1.8.txt on the 1.8 branch, and update platforms tested and tested configurations sections in the 1.8 RELEASE.txt file.
* [svn-r20096] Removed AIX 5.3, Added AIX 6.1 as supported platforms.Albert Cheng2011-02-131-17/+2
| | | | | The problem with the optimization flags for gcc 4.3 and 4.4 has been fixed in v1.8.5. Removed this known problem entry.
* [svn-r20090] Add note to known problems section of RELEASE.txt about ↵Neil Fortner2011-02-111-0/+2
| | | | | | run-all-ex.sh on Cygwin. Tested: kwrite
* [svn-r20081] Update USING file for changes to examples batch files and added ↵Allen Byrne2011-02-111-62/+62
| | | | missing instructions.
* [svn-r20079] Correct Fortran handling in CMake filesAllen Byrne2011-02-101-30/+59
| | | | Tested: local: linux
* [svn-r20078] updated mpich version for jam and amani. Removed kagiso.Albert Cheng2011-02-101-17/+10
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* [svn-r20075] Updated for the adding of mpicc/mpif90 as default parallel ↵Albert Cheng2011-02-091-0/+3
| | | | | | compiler commands for linux systems.
* [svn-r19996] remove reference to jpegAllen Byrne2011-01-261-2/+2
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* [svn-r19994] Added ability to use compressed file for external librariesAllen Byrne2011-01-251-14/+51
| | | | | | Bring 19993 from trunk Tested: local linux
* [svn-r19990] Description:Quincey Koziol2011-01-251-0/+1
| | | | | | | | | | | | Bring r19989 from trunk to 1.8 branch: Finish implementing time tracking for read & seek operations in the 'log' VFD. Also clean up code and track total time during all read/write/seek operations. Tested on: Mac OS X/32 10.6.6 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r19986] Added "gmake clean" known problem in AIX.Albert Cheng2011-01-251-7/+6
| | | | Removed AIX memory problem which was fixed in v186.
* [svn-r19968] Add note on parallel failures to RELEASE.txtNeil Fortner2011-01-191-0/+12
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* [svn-r19893] Purpose:Jonathan Kim2010-12-281-0/+3
| | | | | | | | | | | | | | | | | | | | Bug 2089 - GMQS: h5diff segfault on a compound dataset with fixed length + vlen string type order Description: Merged from HDF5 trunk r19892. This is fix for the segfault when h5diff compares a compound dataset with combination of fixed length string types and vlen string types in certain orders. Optimized vlariable length string handling codes. The fix is referred from h5dump handling vlen strings. For testing, several compound datasets were added with various combinations. Previous failed cases: - Vlen string, Fixed length string, Vlen string, Fixed length string - Fixed length string, Fixed length string, Vlen string, Vlen string - Fixed length string, Vlen string, Fixed length string, Vlen string Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), linew (solaris-BE)
* [svn-r19877] Add new file.Allen Byrne2010-12-081-0/+629
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* [svn-r19815] Bug 2091: updated with the removal of Metraowerks compiler code.Albert Cheng2010-11-171-1/+2
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* [svn-r19809] Purpose:Mike McGreevy2010-11-171-1/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add "--enable-unsupported" configure flag. Description The "--enable-unsupported" configure flag allows a user to prevent configure from failing due to the use of incompatible options, such as c++ with parallel. Specifying --enable-unsupported will bypass all of configure's checks for incompatible and unsupported combinations of flags. There are no guarantees that the library will be configured in any sort of working condition, but that's the risk of using the --enable-unsupported flag. I've changed all default error messages related to unsupported option combinations to indicate that using --enable-unsupported will allow configure to complete without error. Tested: by hand on jam, tested all unsupported configure option combinations with and without the new flag, making sure the flag allows configure to finish without error. (h5committest wouldn't do any good here; it won't test the new option, and since we're enabling unsupported combinations, failures are likely to occur in build or tests with --enable-unsupported turned on anyways. That's why they're unsupported!)
* [svn-r19763] Changed NPROCS default value from 3 to 6.Albert Cheng2010-11-112-5/+4
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* [svn-r19758] Purpose:Jonathan Kim2010-11-111-0/+4
| | | | | | | | | | | | | | | | | Improve h5diff performance. Description: The following changes for improving h5diff performance: 1) use HDmemcmp() before comparing each elements (memcmp() is very fast at both linew and jam) 2) replace the expensive H5Tequals() calls 3) retrieve datatype information at dataset level not each element level for compound datasets Merged from hdf5 trunk r19757. Tested: jam (linux32-LE)
* [svn-r19755] Updated the compilers versions of AIX 5.3 and 6.1.Albert Cheng2010-11-101-16/+14
| | | | | | Removed tests platforms of Cray XT3 and Glory, both SNL machines since they were not tested. Added AIX shared library known problem.
* [svn-r19752] Purpose:Jonathan Kim2010-11-091-0/+4
| | | | | | | | | | | | | | | Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is difficult to parse. Description: Update to add curly brackets for the nested compound members, when S (--simple) option is used with -l (--label), so user can tell which members blong to which compound type. Merged from hdf5 trunk r19751. Tested: jam (linux32-LE), amani (linux64-LE)
* [svn-r19748] Updated windows tested machines to indicate which build system ↵Allen Byrne2010-11-091-13/+15
| | | | was used
* [svn-r19713] Purpose:Jonathan Kim2010-11-021-0/+5
| | | | | | | | | | | | | | | | Fixed h5diff to handle variable-length strings in a compound dataset correctly. Also variable-length string array in a compound dataset. Bug #1989. Description: Garbage values were displayed when h5diff compared variable-length strings (or string array) in a compound type dataset. Merged from hdf5 trunk r19712. Tested: jam (linux32-LE), heiwa (linuxppc64-BE)
* [svn-r19634] Purpose:Jonathan Kim2010-10-181-1/+2
| | | | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19633. Tested: jam, amani
* [svn-r19603] Purpose:Jonathan Kim2010-10-141-2/+1
| | | | | | | | | | | Backout the previous change: (Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.) Description: Some failure occurred on talwit, so backout the changes and will put it back after the fix. (Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19598.)
* [svn-r19601] Add ExternalProject noteAllen Byrne2010-10-141-3/+12
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* [svn-r19599] Purpose:Jonathan Kim2010-10-141-1/+2
| | | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19598. Tested: jam, amani
* [svn-r19567] Maintenance: Added -O3 to be used with the C Intel v 11 ↵Elena Pourmal2010-10-081-1/+2
| | | | | | | | | compilers; set default to -O for all unknown versions of the C Intel compilers. Modified apple config file to display Intel compiler information. Updated RELEASE.txt notes accordingly. Platfroms tested: jam, amani and dubna (Mac 64-bit) with Intel C, Fortran and C++ compilers.
* [svn-r19526] Updated tested Windows platformsAllen Byrne2010-10-061-3/+14
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* [svn-r19511] Snapshot version 1.8 release 7 (snap0)HDF Tester2010-10-051-1/+1
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