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* [svn-r20770] Entered the two known problems:Albert Cheng2011-05-071-6/+22
| | | | | 1. "make install prefix=XXX" does not work with shared libraries. 2. May have to increase $HDF5_ALARM_SECONDS for t_shapesame test.
* [svn-r20690] Changed compiler name from xlf/mpxlf_r to xlf90/mpxlf90_r to avoidAlbert Cheng2011-04-291-2/+2
| | | | | misunderstanding. xlf/mpxlf_r are actually Fortran 77 compilers. HDF5 requires Fortran 90 or higher.
* [svn-r20647] Description:Quincey Koziol2011-04-261-13/+13
| | | | | | | | Bring r20646 from trunk to 1.8 branch: Tested on: FreeBSD/32 8.2 (loyalty) (too minor to require h5committest)
* [svn-r20566] - Clear our RELEASE.txt in preparation for 1.8.8 release work.Mike McGreevy2011-04-202-128/+25
| | | | | | - Update version references in RELEASE.txt - Add reminder to HISTORY.txt that it needs completed RELEASE.txt from the 1.8.7 branch when it's done.
* [svn-r20565] Update 1.8 branch version to 1.8.8-snap0Mike McGreevy2011-04-201-1/+1
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* [svn-r20558] _ Added a JIRA ticket # to a bug fix entry.Mark Evans2011-04-191-1/+1
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* [svn-r20557] Update Windows doc referencesAllen Byrne2011-04-194-15/+18
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* [svn-r20547] _ Edited for language. Some questions sent to Jonathan Mark Evans2011-04-181-36/+39
| | | | and Albert for clarification.
* [svn-r20526] Description:Frank Baker2011-04-151-51/+54
| | | | Editorial pass.
* [svn-r20525] Description:Mike McGreevy2011-04-151-0/+13
| | | | | | | | Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch. Tested: Tested on jam, fred, bangan (CYGWIN), and h5committested.
* [svn-r20521] Removed ibm-aix6.x file which just sourced ibm-aix file. ↵Albert Cheng2011-04-151-1/+2
| | | | | | | | | | Removed code in configure.in that tried to distinguish different versions of AIX. This is no longer needed. Tested: NCSA Blue-print. No h5committest since this affected AIX system only.
* [svn-r20517] Description:Quincey Koziol2011-04-151-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | Bring r20513 from trunk to 1.8 branch: Correct several problems with compound datatypes that don't have any fields added: - Change assertion to error report when a file is encountered which has this situation. - Added check to attribute creation to avoid creating attributes with a datatype like this (datasets and named datatypes already have the check) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
* [svn-r20509] Added my bugfixes and known issues to RELEASE.txt.Dana Robinson2011-04-151-0/+13
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* [svn-r20494] Purpose:Jonathan Kim2011-04-141-0/+2
| | | | | | | | | | | | | Fixed HDFFV-4342 : GMQS: h5dump test fails when source directory is read-only Description: Merged from HDF5 trunk r20488 and r20490. Updated h5dump test case script to prevent entire test failure upon source code directory is read-only. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, windows)
* [svn-r20492] Rename H5Frelease_file_cache to H5Fclear_elink_file_cache.Neil Fortner2011-04-131-1/+1
| | | | Tested: Fedora (too minor for full committest)
* [svn-r20479] Fixed issue HDFFV-5866 (BZ 2156). Changed scripts to run ↵Larry Knox2011-04-121-2/+0
| | | | | | examples to use specific names for compiled executable files instead of a.out, which did not work on Cywin as it produces a.exe by default. Removed issue from known problems section of RELEASE.txt. Tested with h5committest and Cygwin 1.7.8 on Windows 7.
* [svn-r20409] Corrected text in INSTALL file: there is no --enable-szlib ↵Larry Knox2011-04-041-1/+1
| | | | configure option, it should be --with-szlib=.
* [svn-r20385] Purpose:Jonathan Kim2011-03-311-0/+4
| | | | | | | | | | | | | | | | | | | Bug 2182 - h5ls and h5dump: update to use --enable-error-stack among tools, also update related descriptions Description: Merged from HDF5 trunk r20378 and r20379 Decided to use --enable-error-stack long option name only to display error stack messages from HDF5 lib among tools. Updated to unify option name to '--enable-error-stack' for printing HDF5 error stack messages for HDF5 tools. h5ls and h5dump for now. For h5ls, this replaces "-e/--errors" option, which is deprecated. For h5dump, remove -E from help page and RM , which was added by mistake before release1.8.7. Help page and RM got updated. Updated test case. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20369] Purpose:Jonathan Kim2011-03-291-0/+3
| | | | | | | | | | | | | | | | | Fixed Bug 2184 - GMQS: h5diff - incorrect calculation code for --use-system-epsilon option Description: Fixed h5diff for --use-system-epsilon option: the calculation changed from ( |a - b| / b ) to ( |a - b| ). This was decided for better performance and was corrected only in HDF5 trunk, so 1.8 got updated. Also comments for equal_XXX() function were updated correctly. Also help page and RM got updated correctly. Also add test cases for testing the differences w/wo the option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r20367] Added BZ1725 reference corresponding to r20365Allen Byrne2011-03-291-0/+6
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* [svn-r20350] Purpose:Jonathan Kim2011-03-251-0/+4
| | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Merged from HDF5 trunk r20334. This is related to previous checkin r20299. Add help page update for verbose option level feature, which displays useful information about attribute difference with -v1, --verbose=1 -v2 or --verbose=2 option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20301] brought revisions 19868:20300 from the 1.8.6_vms branch to the ↵Raymond Lu2011-03-231-2/+2
| | | | 1.8 branch
* [svn-r20299] Purpose:Jonathan Kim2011-03-231-0/+4
| | | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Merged from HDF5 trunk r20294 Previously h5diff compared attributes correctly only when two objects have the same number of attributes and attribute names are identical. Also didn't display useful information about attribute difference. This fix covers all other cases. This fixes both issues. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20288] Purpose:Jonathan Kim2011-03-221-0/+4
| | | | | | | | | | | | | | | Fixed Bug 2216 - GMQS: h5diff - memory leak when compares vlen string in dataset or attributes Description: Merged from HDF5 trunk r20266, r20270 and r20285. Test for dataset : valgrind --leak-check=full ./h5diff -v h5diff_dset1.h5 h5diff_dset2.h5 /g1/VLstring Test for attr : valgrind --leak-check=full ./h5diff h5diff_attr1.h5 h5diff_attr2.h5 Both test cases are in testing script. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20286] Purpose:Jonathan Kim2011-03-211-0/+2
| | | | | | | | | | | | | | | | | Fixed Bug 2214 - GMQS: h5diff - memory leak when accessing symbolic links with --follow-symlinks option and the target type is UDLink or some error occurs Description: Merged from HDF5 trunk r20274. Memory leaks occurred when accessing symbolic links with --follow-symlink option. Test cases are in testing script. (400 - 456, 501 - 518) An example test : valgrind --leak-check=full h5diff --follow-symlinks -v h5diff_softlinks.h5 h5diff_softlinks.h5 Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20246] Purpose:Jonathan Kim2011-03-141-0/+2
| | | | | | | | | | | Fixed Bug 1904 - h5ls : usage of '-a' option is not clear to display expected output Description: Merged from HDF5 trunk r20231. Fixed incorrect content and improved help page for -a option of h5ls. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
* [svn-r20244] Allen Byrne2011-03-141-1/+1
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* [svn-r20227] Entered known problem of --with-mpe does not work with mpich2.Albert Cheng2011-03-101-0/+2
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* [svn-r20225] Add enable-error-stack option to new features-tools section.Allen Byrne2011-03-101-1/+4
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* [svn-r20220] Description:Quincey Koziol2011-03-101-0/+3
| | | | | | | | | | | | | | | | | | | Bring r20219 from trunk to 1.8 branch: Tell the VFL flush call that the file will be closing, allowing the VFDs to avoid sync'ing the file (particularly valuable in parallel). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
* [svn-r20210] Purpose:Jonathan Kim2011-03-091-0/+3
| | | | | | | | | | | | | | Fix Bug 2120 - h5copy: improve to copy an object into same HDF file Description: Merged from HDF5 trunk r20203. Before the fix users can't copy an object (dataset or group) with different name if input file (-i) and output file (-o) is same. This feature would be useful to clone any object with different name and reuse contents. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake (jam)
* [svn-r20198] Purpose:Jonathan Kim2011-03-081-0/+3
| | | | | | | | | | | | | Fixing Bug 2161 - GMQS: h5dump - only on Windows, skip displaying a data value every a certain lines in array type dataset Description: Merged from HDF5 trunk r20188. Fixed h5dump for skipping some values for long array type dataset on Windows. This issue only occurred on Windows due to the different return behavior from _vsnprintf() funtion. Tested: Windows, jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20193] Snapshot version 1.8 release 7 (snap1)Larry Knox2011-03-071-1/+1
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* [svn-r20133] Purpose:Jonathan Kim2011-02-211-0/+3
| | | | | | | | | | | | | | | | Fixing Bug 2092 - h5dump does not display index for a dataset Description: Merged from HDF5 trunk r20108 and r20132. h5dump skip displaying array indices every certain number when the array type dataset is relatively big. The certain number varies according to the size of each array. This checkin fix the skipping array indices problem. This fix also correct indentation of the dataset data output. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20125] Bug 1586 - the datatype handler created with H5Tencode/decode ↵Raymond Lu2011-02-181-1/+3
| | | | | | had the reference count 0. I fixed it by changing the APP_REF parameter of H5I_register from FALSE to TRUE and added a test case in dtypes.c. The changes to configture.in, tools/misc, tools/lib, config, c++/test, Makefile.am, and fortran are only property changes when I merged from the trunk. Tested on jam. But I tested the same fix in the trunk with h5committest.
* [svn-r20114] Merge r20112 (open_file_pool) into 1_8 branch.Neil Fortner2011-02-171-0/+4
| | | | Tested: jam (open_file_pool branch tested with h5committest)
* [svn-r20102] Update text file with references to examples.zip file.Allen Byrne2011-02-141-1/+2
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* [svn-r20101] Description: Mike McGreevy2011-02-142-89/+749
| | | | | | | Copy 1.8.6 RELEASE.txt into HISTORY-1.8.txt on the 1.8 branch, and update platforms tested and tested configurations sections in the 1.8 RELEASE.txt file.
* [svn-r20096] Removed AIX 5.3, Added AIX 6.1 as supported platforms.Albert Cheng2011-02-131-17/+2
| | | | | The problem with the optimization flags for gcc 4.3 and 4.4 has been fixed in v1.8.5. Removed this known problem entry.
* [svn-r20090] Add note to known problems section of RELEASE.txt about ↵Neil Fortner2011-02-111-0/+2
| | | | | | run-all-ex.sh on Cygwin. Tested: kwrite
* [svn-r20081] Update USING file for changes to examples batch files and added ↵Allen Byrne2011-02-111-62/+62
| | | | missing instructions.
* [svn-r20079] Correct Fortran handling in CMake filesAllen Byrne2011-02-101-30/+59
| | | | Tested: local: linux
* [svn-r20078] updated mpich version for jam and amani. Removed kagiso.Albert Cheng2011-02-101-17/+10
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* [svn-r20075] Updated for the adding of mpicc/mpif90 as default parallel ↵Albert Cheng2011-02-091-0/+3
| | | | | | compiler commands for linux systems.
* [svn-r19996] remove reference to jpegAllen Byrne2011-01-261-2/+2
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* [svn-r19994] Added ability to use compressed file for external librariesAllen Byrne2011-01-251-14/+51
| | | | | | Bring 19993 from trunk Tested: local linux
* [svn-r19990] Description:Quincey Koziol2011-01-251-0/+1
| | | | | | | | | | | | Bring r19989 from trunk to 1.8 branch: Finish implementing time tracking for read & seek operations in the 'log' VFD. Also clean up code and track total time during all read/write/seek operations. Tested on: Mac OS X/32 10.6.6 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r19986] Added "gmake clean" known problem in AIX.Albert Cheng2011-01-251-7/+6
| | | | Removed AIX memory problem which was fixed in v186.
* [svn-r19968] Add note on parallel failures to RELEASE.txtNeil Fortner2011-01-191-0/+12
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* [svn-r19893] Purpose:Jonathan Kim2010-12-281-0/+3
| | | | | | | | | | | | | | | | | | | | Bug 2089 - GMQS: h5diff segfault on a compound dataset with fixed length + vlen string type order Description: Merged from HDF5 trunk r19892. This is fix for the segfault when h5diff compares a compound dataset with combination of fixed length string types and vlen string types in certain orders. Optimized vlariable length string handling codes. The fix is referred from h5dump handling vlen strings. For testing, several compound datasets were added with various combinations. Previous failed cases: - Vlen string, Fixed length string, Vlen string, Fixed length string - Fixed length string, Fixed length string, Vlen string, Vlen string - Fixed length string, Vlen string, Fixed length string, Vlen string Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), linew (solaris-BE)
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