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* [svn-r22188] Purpose:Jonathan Kim2012-03-291-0/+4
| | | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Merged from HDF5 trunk 22176. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r22174] Port r22173 from trunk to 1.8 branchNeil Fortner2012-03-281-0/+2
| | | | | | | | | | | | | | | | | | Purpose: Fix HDFFV-7762 Description: When copying an object with attribute creation order tracked, the attribute creation order was not copied correctly to the destination file, causing an error if the creation order was also indexed (due to attempting to insert duplicate keys) or incorrect creation orders otherwise. Fixed to copy the creation order correctly. Also fixed the attribute character set not being copied, and fixed an issue where an attribute opened with H5Aopen (or similar, but not by_idx), from an object using the latest format but without creation order being tracked, would always report the creation order as 0 (and marked as valid). Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22159] Propagated Windows and POSIX correctness fixes from the SEC2 ↵Dana Robinson2012-03-271-2/+6
| | | | | | | | | | | VFD to the core VFD. This mainly affects backing store I/O and fixes a bug on Windows where files > 2 GB could not be opened. Fixes/completes: HDFFV-7603 (Can't open files > 2 GB on Windows) HDFFV-7916 (Windows/POSIX correctness fixes) Tested on: jam, ostrich, koala, loyalty, 64-bit Mac OS-X Lion, 64-bit Windows 7
* [svn-r22158] Updated RELEASE.txt concerning HDFFV-7769 (changes to the ↵Dana Robinson2012-03-271-0/+5
| | | | istore test to keep CTest from timing out when sparse files are not supported).
* [svn-r22157] Merge the atomicity routines from the trunkMohamad Chaarawi2012-03-271-1/+4
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* [svn-r22156] Issue 7785 - Writing or reading many small chunks ran out of ↵Raymond Lu2012-03-271-0/+4
| | | | | | | | memory and caused seg fault. I added checks in two places to make sure the library returns error stack when it fails to allocate memory. I didn't add any test to the test suite since there is no good way to test it. But I tested and verified the error stack by hand. Tested on jam - this is a merge from the trunk.
* [svn-r22155] Update windows platformsAllen Byrne2012-03-271-8/+6
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* [svn-r22145] #Issue 7922 - H5Pset_data_transform had seg fault with some ↵Raymond Lu2012-03-261-0/+3
| | | | | | | | | operations like x*-100. The parser mistaked "-" as substraction. I fixed it and also fixed another problem with some special cases like 100-x and 2/x. This is a merge from the trunk. Tested on jam, koala, and ostrich.
* [svn-r22141] Snapshot version 1.8 release 9 (snap14)HDF Tester2012-03-261-1/+1
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* [svn-r22124] Purpose:Jonathan Kim2012-03-221-0/+10
| | | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22106] Update linux VM version infoAllen Byrne2012-03-211-14/+14
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* [svn-r22104] Added cross platform example text for new h5dump file optionAllen Byrne2012-03-211-1/+2
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* [svn-r22086] Snapshot version 1.8 release 9 (snap13)HDF Tester2012-03-191-1/+1
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* [svn-r22083] I updated the item for Issue 7756.Raymond Lu2012-03-161-2/+3
| | | | No test is needed.
* [svn-r22073] Port r22072 to 1.8 branchNeil Fortner2012-03-151-0/+2
| | | | | | | | | | | | | | | | Purpose: Fix rare corruption bug (HDFFV-7879) Description: When using the new object header format, it was possible for corruption to occur if the first object header chunk changed size such that the lenght of the "chunk 0 size" field changed. This only occurred if there were messages that had not been decoded. The original algorithm that changed the object header chunk size marked all messages as dirty, causing those that had not been decoded to have both the raw and native form invalidated. Changed the algorithm to avoid marking messages dirty and added assertions to catch the case where messages are dirtied without being decoded (or recently created) first. Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22057] Purpose:Jonathan Kim2012-03-121-4/+10
| | | | | | | | | | | | | | Fix for HDFFV-7835 h5diff: incorrect result for comparing the two same type symlinks as dangling links. Description: When two symbolic dangling links are compared with --follow-symlinks option, the result should be same. It works for comparing two files, but didn't work for comparing two objects. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22038. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22055] Description:Quincey Koziol2012-03-121-0/+2
| | | | | | | | | | | | Bring r22053 from trunk to 1.8 branch: Correct corner case for creating a contiguous dataset with a zero-sized dataspace, when the allocation time is set to early. Also clean up a few compiler warnings in the dataspace code. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22048] Add h5dump issues fixedAllen Byrne2012-03-121-0/+14
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* [svn-r22041] Snapshot version 1.8 release 9 (snap12)HDF Tester2012-03-121-1/+1
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* [svn-r22031] Purpose:Jonathan Kim2012-03-061-1/+4
| | | | | | | | | | | | | | | | Task for HDFFV-7862 - Select data by chunk direction to improve performance in h5repack Description: h5repack sometimes became very slow when handling big chunked datasets in certain cases. (when chunk boundary doesn't match with a hyperslab boundary.) The main issue was from figuring out a hypeslab without considering chunk boundary to read from and write to such datasets. The update was made to figure out a better hyperslab unit with considering chunk boundary to improve performance for such cases prior to the update. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows
* [svn-r22023] Snapshot version 1.8 release 9 (snap11)HDF Tester2012-03-051-1/+1
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* [svn-r22014] Add USER_BLOCK change and highlight whitespace changes for ↵Allen Byrne2012-03-021-1/+3
| | | | h5dump refactoring
* [svn-r22013] HDFFV-7560:Allen Byrne2012-03-021-0/+5
| | | | | | | | | | Merge 1.8 and h5dump/tools and tests based on tools library from trunk. Reduced warnings. HDFFV-7949: Remove duplicated functions in h5ls Tested: local linux,h5committest
* [svn-r22000] Updated for the changes made to IBM configure.Albert Cheng2012-02-281-5/+5
| | | | Also update the IBM tested platform information.
* [svn-r21961] Snapshot version 1.8 release 9 (snap10)HDF Tester2012-02-201-1/+1
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* [svn-r21927] Updated RELEASE.txt with HDFFV-7780 information.Dana Robinson2012-02-101-0/+3
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* [svn-r21914] Issue 7829 - data conversion from "long double" to integers ↵Raymond Lu2012-02-071-0/+12
| | | | | | | | failed on Ubuntu with optimization. I documented it as a known solution and provided users a way to lower down the optimization. No test.
* [svn-r21912] Issue 7756 - Creating a dataset in a read-only file caused seg ↵Raymond Lu2012-02-071-0/+3
| | | | | | fault when the file is closed. I fixed the problem by putting a condition check early in H5O_create of H5O.c. The old code checked it too late, not until a file space is created. I added a test case in tfile.c to check the creation of group, dataset, attribute, and datatype. Tested on jam - I've tested the same changes in the trunk with h5committest.
* [svn-r21911] Snapshot version 1.8 release 9 (snap9)HDF Tester2012-02-061-1/+1
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* [svn-r21899] Snapshot version 1.8 release 9 (snap8)HDF Tester2012-01-301-1/+1
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* [svn-r21892] Purpose:Jonathan Kim2012-01-251-0/+3
| | | | | | | | | | | | | | | | Fix for HDFFV-7836 h5diff: displays error stack message for comparing the two dangling symlink with follow-symlinks option Description: While ago, to improve performance, skipping same object checking (h5tools_is_obj_same()) was added. However the checking function doesn't understand about the dangling link and caused the issue. Since handling dangling link code section already implemented, move the checking function after handling dangling-links to address the problem. Test was added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21885] Snapshot version 1.8 release 9 (snap7)HDF Tester2012-01-231-1/+1
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* [svn-r21877] Snapshot version 1.8 release 9 (snap6)HDF Tester2012-01-161-1/+1
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* [svn-r21870] Purpose:Jonathan Kim2012-01-101-0/+2
| | | | | | | | | | | | | | | Fix for HDFFV-7840 h5repack: memory leak over one of the h5diff test file Description: Turned out that there were two causes of memory leaks. 1. for handling variable length string in attribute. 2. for handling compound type with non-reference members. The first issue is fixed in copy_attr() which is updated to use h5tools_detect_vlen to take care of vlen string as well as vlen data. The second is fixed in copy_refs_attr() of compound handling code. Merged from HDF5 trunk r21869. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21868] Snapshot version 1.8 release 9 (snap5)HDF Tester2012-01-091-1/+1
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* [svn-r21866] Purpose:Jonathan Kim2012-01-061-1/+2
| | | | | | | | | | | | | | Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option Description: Segfault occurred when h5ls access region reference data in an attribute. This didn't occurred when -v option was used. The cause was "h5tool_format_t info;" struct variable members were accessed without proper values were assigned (was NULL), so printf failed later in the code. Merged from HDF5 trunk r21865. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), , cmake-Windows (32-LE)
* [svn-r21858] Snapshot version 1.8 release 9 (snap4)HDF Tester2012-01-021-1/+1
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* [svn-r21851] Snapshot version 1.8 release 9 (snap3)HDF Tester2011-12-261-1/+1
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* [svn-r21832] Snapshot version 1.8 release 9 (snap2)HDF Tester2011-12-191-1/+1
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* [svn-r21807] Update CMake Required version to match current standard 2.8.6Allen Byrne2011-12-051-1/+1
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* [svn-r21806] HDFFV-7854 - Updated all CMakeLists.txt minimum version to be ↵Allen Byrne2011-12-052-2/+3
| | | | 2.8.6.
* [svn-r21800] Snapshot version 1.8 release 9 (snap1)HDF Tester2011-12-051-1/+1
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* [svn-r21794] Add RELEASE.txt note for r21791Neil Fortner2011-12-011-0/+2
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* [svn-r21776] Snapshot version 1.8 release 9 (snap0)HDF Tester2011-11-281-1/+1
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* [svn-r21766] Update Linux VM section to match 1.8.8Allen Byrne2011-11-161-17/+17
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* [svn-r21765] Issue 7618 - the library had seg fault when it tried to shrink ↵Raymond Lu2011-11-151-0/+3
| | | | | | the size of compound data type through H5Tset_size immediately after the type was created. I fixed it in this commit. I'm bringing the fix from the trunk. The only files being change are test/dtypes.c, src/H5T.c, src/H5Tconv.c, and release_docs/RELEASE.txt. All others are property changes. Tested on jam, koala, and linew.
* [svn-r21760] Copy finished RELEASE.txt from the 1.8.8 branchMike McGreevy2011-11-151-2/+715
| | | | to 1.8's HISTORY-1_8.txt file.
* [svn-r21718] Issue 7618 - the library had seg fault when it tried to shrink ↵Raymond Lu2011-11-041-1/+3
| | | | | | | | the size of compound data type through H5Tset_size immedia tely after the type was created. I'm bringing the fix from the trunk that I committed a while ago. My real changes are in test/dtypes.c, src/H5T.c, and release_docs/RELEASE.txt. All other changes are property changes. Tested on jam. But I tested the same fix in the trunk on jam, koala, and linew.
* [svn-r21717] Update cmake configurationAllen Byrne2011-11-041-2/+9
| | | | | | | Update cmake to generate source folders in VS Brought parallel changes from trunk Tested: local linux
* [svn-r21639] - Clear out RELEASE.txt in preparation for 1.8.9 release changes.Mike McGreevy2011-10-212-228/+29
| | | | | | - Update version references in RELEASE.txt - Add reminder to HISTORY-1_8.txt that it needs the completed RELEASE.txt from the 1.8.8 branch when it's done.
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