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* [svn-r20502] Purpose:Mike McGreevy2011-04-141-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | Add "silent make" mode configure option. Description: Automake 1.11 has a new option available that allows for a silent make mode. This functionality needs to be explicitly enabled in configure.in via the use of the automake macro AM_SILENT_RULES, which is what this commit is adding. This introduces a new configure option: --{en|dis}able-silent-rules This option is on by default, and simplies compile and link line outputs when building the library. Disabling this option will print full "verbose" output (i.e., full compile and linking lines for each target). Tested: This was tested on jam & h5committested
* [svn-r20491] Rename H5Frelease_file_cache to H5Fclear_elink_file_cache.Neil Fortner2011-04-131-1/+1
| | | | Tested: Fedora (too minor for full committest)
* [svn-r20488] Purpose:Jonathan Kim2011-04-121-0/+2
| | | | | | | | | | | Fix HDFFV-4342 : GMQS: h5dump test fails when source directory is read-only Description: Updated h5dump test case script to prevent entire test failure upon source code directory is read-only. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20482] Larry Knox2011-04-121-2/+0
| | | | | | | | | | | | | | | | Fixed issue HDFFV-5866 (BZ 2156). Changed scripts to run examples to use specific names for compiled executable files instead of a.out, which did not work on Cywin as it produces a.exe by default. Removed issue from known problems section of RELEASE.txt. Tested with Cygwin 1.7.8 on Windows 7. This line, and those below, will be ignored-- M release_docs/RELEASE.txt M hl/c++/examples/run-hlc++-ex.sh.in M hl/fortran/examples/run-hlfortran-ex.sh.in M hl/examples/run-hlc-ex.sh.in M c++/examples/run-c++-ex.sh.in M fortran/examples/run-fortran-ex.sh.in M examples/run-c-ex.sh.in
* [svn-r20475] Purpose:Mike McGreevy2011-04-111-0/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Revise shared Fortran library disabling scenarios in configure - Improve configure output summary Description: Shared Fortran libraries are not supported on Mac, but were being disabled by configure in a way that also forced the C libraries to be static-only. This has been fixed, so now only shared Fortran is disabled while shared C can remain. This prompted two additional changes: 1. While working on the check that addresses whether or not shared Fortran libraries are allowed, removed old and no longer needed check(s) that disable shared Fortran libraries with HP, Intel 8, PGI, and Absoft compilers. (Essentially, Mac is the only situation in which Fortran shared are disabled by configure.) 2. Having two different states of libraries (i.e. shared C library with static-only Fortran library) was not apparent in the configure summary, which labeled all libraries as either shared and/or static. I've added lines to both the C++ and Fortran output sections to list shared/static-ness of these libraries specifically. Additionally, I've made sure that the new --enable-unsupported configure option correctly overrides configure if it tries to disable a shared library. Tested: jam, fred, & h5committest
* [svn-r20410] Corrected text in INSTALL file: there is no --enable-szlib ↵Larry Knox2011-04-041-1/+1
| | | | configure option, it should be --with-szlib=.
* [svn-r20405] Description:Quincey Koziol2011-04-041-1/+1
| | | | Bump patch release number, after giving out private snapshots.
* [svn-r20384] Purpose:Jonathan Kim2011-03-311-0/+3
| | | | | | | | | | | | | | | | | | Fixed Bug 2184 - GMQS: h5diff - incorrect calculation code for --use-system-epsilon option Description: Merged from HDF5 1.8 branch r20369. Fixed h5diff for --use-system-epsilon option: the calculation changed from ( |a - b| / b ) to ( |a - b| ). This was decided for better performance and was corrected only in HDF5 trunk, so 1.8 got updated. Also comments for equal_XXX() function were updated correctly. Also help page and RM got updated correctly. Also add test cases for testing the differences w/wo the option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r20378] Purpose:Jonathan Kim2011-03-301-0/+4
| | | | | | | | | | | | | | | | | | | Bug 2182 - h5ls and h5dump: update to use --enable-error-stack among tools, also update related descriptions Description: Decided to use --enable-error-stack long option name only to display error stack messages from HDF5 lib among tools. Updated to unify option name to '--enable-error-stack' for printing HDF5 error stack messages for HDF5 tools. h5ls and h5dump for now. For h5ls, this replaces "-e/--errors" option, which is deprecated. For h5dump, remove -E from help page and RM , which was added by mistake before release1.8.7. Help page and RM got updated. Updated test case. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r20358] added notation for BZ 1725Allen Byrne2011-03-281-0/+6
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* [svn-r20334] Purpose:Jonathan Kim2011-03-251-0/+4
| | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: This is related to previous checkin r20294. Add help page update for verbose option level feature, which displays useful information about attribute difference with -v1, --verbose=1 -v2 or --verbose=2 option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20315] brought revisions 19868:20300 from the 1.8.6_vms branch to the ↵Raymond Lu2011-03-241-2/+2
| | | | trunk for VMS work
* [svn-r20294] Purpose:Jonathan Kim2011-03-221-0/+4
| | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Previously h5diff compared attributes correctly only when two objects have the same number of attributes and attribute names are identical. This fix covers all other cases. Also didn't display useful information about attribute difference. This fixes both issues. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20274] Purpose:Jonathan Kim2011-03-181-0/+2
| | | | | | | | | | | | | | Fixed Bug 2214 - GMQS: h5diff - memory leak in diff() Description: Memory leaks occurred when accessing symbolic links with --follow-symlink option. Test cases are in testing script. (400 - 456, 501 - 518) An example test : valgrind --leak-check=full h5diff --follow-symlinks -v h5diff_softlinks.h5 h5diff_softlinks.h5 Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
* [svn-r20270] Purpose:Jonathan Kim2011-03-181-0/+2
| | | | | | | | | | | | | | | | Improve the previous fix for Bug 2216 - GMQS: h5diff - memory leak when compares vlen string in dataset or attributes Description: Improve the fix along with the previous checkin r20266. Add a new function to tool lib, h5tools_detect_vlen_data() which return TRUE if include any kind of vlen data all at once, either VLEN-data or VLEN-string and so on. Also updated h5ls and h5dump code accordingly. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
* [svn-r20243] Update CMake version to 2.8.4Allen Byrne2011-03-141-1/+1
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* [svn-r20231] Purpose:Jonathan Kim2011-03-111-0/+2
| | | | | | | | | | Fixed Bug 1904 - h5ls : usage of '-a' option is not clear to display expected output Description: Fixed incorrect content and improved help page for -a option of h5ls. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), Cmake (jam)
* [svn-r20226] Entered known problem of --with-mpe does not work with mpich2.Albert Cheng2011-03-101-0/+2
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* [svn-r20224] Add enable-error-stack option to new features-tools section.Allen Byrne2011-03-101-7/+13
| | | | Enable h5stat tests for valgrind testing.
* [svn-r20223] Adding notes for fixing h5dump bug on -y -o options.Peter Cao2011-03-101-0/+3
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* [svn-r20203] Purpose:Jonathan Kim2011-03-081-0/+3
| | | | | | | | | | | | | Fix Bug 2120 - h5copy: improve to copy an object into same HDF file Description: Before the fix users can't copy an object (dataset or group) with different name if input file (-i) and output file (-o) is same. This feature would be useful to clone any object with different name and reuse contents. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r20188] Purpose:Jonathan Kim2011-03-041-0/+3
| | | | | | | | | | | | Fixing Bug 2161 - GMQS: h5dump - only on Windows, skip displaying a data value every a certain lines in array type dataset Description: Fixed h5dump for skipping some values for long array type dataset on Windows. This issue only occurred on Windows due to the different return behavior from _vsnprintf() funtion. Tested: Windows, jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20141] Bring 1.8 r20139 cmake and windows changes to trunkAllen Byrne2011-02-221-72/+102
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* [svn-r20121] Bug 1586 - the datatype handler created with H5Tencode/decode ↵Raymond Lu2011-02-181-0/+3
| | | | | | had the reference count 0. I fixed it by changing the APP_REF parameter of H5I_register from FALSE to TRUE and added a test case in dtypes.c. Tested on jam, heiwa, and amani.
* [svn-r20113] Add note to RELEASE.txt about external file cache.Neil Fortner2011-02-171-0/+4
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* [svn-r20108] Purpose:Jonathan Kim2011-02-151-0/+3
| | | | | | | | | | | | | | Fixing Bug 2092 - h5dump does not display index for a dataset Description: h5dump skip displaying array indices every certain number when the array type dataset is relatively big. The certain number varies according to the size of each array. This checkin fix the skipping array indices problem. This fix also correct indentation of the dataset data output. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20095] Removed AIX 5.3 and Cray xt3, added AIX 6.1 as supported platforms.Albert Cheng2011-02-131-13/+8
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* [svn-r20089] Add note to known problems section of RELEASE.txt about ↵Neil Fortner2011-02-111-0/+2
| | | | | | run-all-ex.sh on Cygwin. Tested: kwrite
* [svn-r20076] Updated for the adding of mpicc/mpif90 as default parallel ↵Albert Cheng2011-02-091-0/+3
| | | | | | compiler commands for linux systems.
* [svn-r20032] Add bug number to RELEASE.txtNeil Fortner2011-02-021-1/+1
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* [svn-r20029] Purpose: Fix bug 2131Neil Fortner2011-02-021-0/+4
| | | | | | | | | | Description: When using the scale-offset filter with floating point data or fill values, big endian machines would save some metadata in the wrong byte order. This caused such datasets to yield incorrect data when read on little endian machines. Fixed the scale-offset filter to always save this metadata in the right byte order (i.e. little endian). Tested: jam, amani, heiwa (h5committedt); fedora, linew
* [svn-r19995] remove reference to jpegAllen Byrne2011-01-261-2/+2
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* [svn-r19993] Added ability to use compressed file for external libraries ↵Allen Byrne2011-01-251-4/+6
| | | | | | corrected. Tested: local linux
* [svn-r19991] Added ability to use compressed file for external librariesAllen Byrne2011-01-251-14/+49
| | | | Tested: local linux
* [svn-r19967] Add note on parallel failures to RELEASE.txtNeil Fortner2011-01-191-0/+12
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* [svn-r19892] Purpose:Jonathan Kim2010-12-281-0/+3
| | | | | | | | | | | | | | | | | | | Bug 2089 - GMQS: h5diff segfault on a compound dataset with fixed length + vlen string type order Description: This is fix for the segfault when h5diff compares a compound dataset with combination of fixed length string types and vlen string types in certain orders. Optimized vlariable length string handling codes. The fix is referred from h5dump handling vlen strings. For testing, several compound datasets were added with various combinations. Previous failed cases: - Vlen string, Fixed length string, Vlen string, Fixed length string - Fixed length string, Fixed length string, Vlen string, Vlen string - Fixed length string, Vlen string, Fixed length string, Vlen string Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19876] Add new file.Allen Byrne2010-12-081-0/+629
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* [svn-r19816] Bug 2091: updated with the removal of Metraowerks compiler code.Albert Cheng2010-11-171-0/+2
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* [svn-r19808] Purpose:Mike McGreevy2010-11-171-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add "--enable-unsupported" configure flag. Description The "--enable-unsupported" configure flag allows a user to prevent configure from failing due to the use of incompatible options, such as c++ with parallel. Specifying --enable-unsupported will bypass all of configure's checks for incompatible and unsupported combinations of flags. There are no guarantees that the library will be configured in any sort of working condition, but that's the risk of using the --enable-unsupported flag. I've changed all default error messages related to unsupported option combinations to indicate that using --enable-unsupported will allow configure to complete without error. Tested: by hand on jam, tested all unsupported configure option combinations with and without the new flag, making sure the flag allows configure to finish without error. (h5committest wouldn't do any good here; it won't test the new option, and since we're enabling unsupported combinations, failures are likely to occur in build or tests with --enable-unsupported turned on anyways. That's why they're unsupported!)
* [svn-r19798] Purpose:Mike McGreevy2010-11-171-0/+4
| | | | | | | | | | | | | | | | | | | | | | | | | Add additional error checking to catch erroneous user input. Description: Attempting to retrieve a links's name by index in the case where the link is external and the file that the object is located in doesn't exist was causing a segmentation fault (in production) and an assertion failure (in debug). The segfault wasn't occuring until the metadata accumulator attempted a write, so I've added error checking higher in the pipeline in H5O_protect (where there was previously just an assert) to catch this. I've also added additional asserts in the H5F layer where there were none. Additionally, I added another case to the links.c test to test that this fails gracefully instead of segfaulting or asserting out. Tested: h5committest and gandalf (mac os x)
* [svn-r19764] Updated NPROCS default value from 3 to 6.Albert Cheng2010-11-111-3/+3
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* [svn-r19757] Purpose:Jonathan Kim2010-11-111-0/+4
| | | | | | | | | | | | | | | | Improve h5diff performance. Description: The following changes for improving h5diff performance: 1) use HDmemcmp() before comparing each elements (memcmp() is very fast at both linew and jam) 2) replace the expensive H5Tequals() calls 3) retrieve datatype information at dataset level not each element level for compound datasets Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19751] Purpose:Jonathan Kim2010-11-091-0/+4
| | | | | | | | | | | | | | Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is difficult to parse. Description: Update to add curly brackets for the nested compound members, when S (--simple) option is used with -l (--label), so user can tell which members blong to which compound type. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32)
* [svn-r19740] Snapshot version 1.9 release 79HDF Tester2010-11-071-1/+1
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* [svn-r19712] Purpose:Jonathan Kim2010-11-021-0/+5
| | | | | | | | | | | | | | | Fixed h5diff to handle variable-length strings in a compound dataset correctly. Also variable-length string array in a compound dataset. Bug #1989. Description: Garbage values were displayed when h5diff compared variable-length strings (or string array) in a compound type dataset. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (Mac32)
* [svn-r19701] Snapshot version 1.9 release 78HDF Tester2010-10-311-1/+1
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* [svn-r19666] Snapshot version 1.9 release 77HDF Tester2010-10-241-1/+1
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* [svn-r19633] Purpose:Jonathan Kim2010-10-181-0/+2
| | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Tested: jam, amani, heiwa
* [svn-r19605] Purpose:Jonathan Kim2010-10-151-2/+0
| | | | | | | | | | | Backout the previous changes (r19598): (Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.) Description: Some failure occurred on talwit, so backout the changes and will put it back after the fix. (Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19598.)
* [svn-r19600] Add ExternalProject noteAllen Byrne2010-10-141-3/+12
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