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* Re-write of Java JNI error handlingJordan Henderson2019-02-141-0/+4
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* Add RELEASE.txt note for collective metadata read fixesJordan Henderson2019-02-121-0/+16
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* Fix test issue in testpar/t_dset.c with MPI-2 implementationsJordan Henderson2019-02-071-0/+5
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-02-071-0/+10
|\ | | | | | | | | * commit 'e594811caf10c66c12cad7c554854deea262d9cb': Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
| * Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-02-061-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '7f5741825db0737db5ac46c43009681508a73002': Add release notes information. Modification based on feedback from pull request. Modification based on feedback from pull request. There is performance issue when closing an object. The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1) Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects. Conflicts: release_docs/RELEASE.txt
* | HDFFV-10697 Disable compression option if source unavailableAllen Byrne2019-02-051-0/+7
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* Added a line for the CMake pread/write option to INSTALL_CMake.txt.Dana Robinson2019-02-041-0/+1
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* Merge of changes from develop for 1.10.5.Dana Robinson2019-02-041-0/+39
| | | | Added RELEASE.txt entries for new features.
* Renamed data fileBinh-Minh Ribler2019-02-011-2/+2
| | | | | | | | | Description: Renamed data file with long name to a shorter name. Revised an entry in RELEASE.txt Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
* Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-311-11/+52
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * Add RELEASE.txt note for unknown message fix (pull request 1448)Neil Fortner2019-01-291-0/+6
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| * Merge pull request #1493 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-241-0/+15
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '217d57d30d2d62f987affcc8859df982dc86d2b3': CMake fix Java html fix and cmake update HDFFV-10686 add note HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)
| | * HDFFV-10686 add noteAllen Byrne2019-01-241-0/+15
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Jordan Henderson2019-01-241-11/+18
| |\ \ | | |/ | | | | | | | | | | | | | | | | | | * commit 'd26963b180a052ac063907f95596a7ecad08ef8e': Add clear objects to ignore tests Add new clear tests to ignore list Cleanup variable names HDFFV-10685 Always set version flags on OSX
| | * HDFFV-10685 Always set version flags on OSXAllen Byrne2019-01-221-11/+18
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| * | Add RELEASE.txt note for parallel filters test fixJordan Henderson2019-01-221-0/+7
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| * Fix CMake policy 54 warningsAllen Byrne2019-01-181-0/+6
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* | Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684Binh-Minh Ribler2019-01-311-3/+31
|/ | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix does not cover all cases, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Merge pull request #1429 in HDFFV/hdf5 from ↵Larry Knox2019-01-141-0/+8
| | | | | | | | | HDFFV-10596-fortran-library-names-differ to develop * commit 'f4c9ec5d41aa53829617274d3286f1e9a45ae57e': Add RELEASE.txt entry for HDFFV-10596. Uninstall should remove the libhdf5_hl_fortran links. Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
* misc. merge clean-upM. Scot Breitenfeld2019-01-111-3/+0
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* merged:M. Scot Breitenfeld2019-01-101-0/+302
| | | | | HDFFV-10652 HDFFV-10443
* Fortran wrappers for dataset obj header minimization API calls.Dana Robinson2019-01-091-2/+12
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* Merge pull request #1442 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2019-01-071-0/+13
|\ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '1a50622733c14d89b3fd8c6bab684af9205a3b96': Fix for daily test failure: too many arguments to function 'H5Gopen1'. Fix the git merge leftover in RELEASE.txt. Fix the git merge leftovers in RELEASE.txt. Fix for HDFFV-10659: The library aborts with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
| * Fix the git merge leftover in RELEASE.txt.Vailin Choi2019-01-061-0/+1
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| * Fix the git merge leftovers in RELEASE.txt.Vailin Choi2019-01-061-5/+0
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| * Fix for HDFFV-10659: The library aborts with "infinite loop closing library"Vailin Choi2019-01-061-0/+17
| | | | | | | | | | | | | | | | after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
* | Merge pull request #1447 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-071-6/+31
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'f7d530dd275e176e59b26c1b7363ba16b3ab6c9c': HDFFV-10674, 10664, 10674
| * | HDFFV-10674, 10664, 10674Allen Byrne2019-01-071-6/+31
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* | Merged the rest of the parallel flush test code.Dana Robinson2019-01-071-3/+7
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* Merge pull request #1431 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-051-3/+20
|\ | | | | | | | | | | | | | | ~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10 * commit '82dd54c26b11245c36f65a044e9b717dc2c337e0': Revised text Fixed CVE division-by-zero issues Description: Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All the occurrences are in: H5D__create_chunk_map_single H5D__create_chunk_file_map_hyper H5D__chunk_allocate H5D__chunk_update_old_edge_chunks H5D__chunk_prune_by_extent H5D__chunk_copy_cb H5D__chunk_collective_fill Also updated RELEASE.txt for the chunk query functions and removed some blank lines in chunk_info.c. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * Revised textBinh-Minh Ribler2019-01-041-3/+4
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| * Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-042-2/+16
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * | Fixed CVE division-by-zero issuesBinh-Minh Ribler2019-01-041-3/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All the occurrences are in: H5D__create_chunk_map_single H5D__create_chunk_file_map_hyper H5D__chunk_allocate H5D__chunk_update_old_edge_chunks H5D__chunk_prune_by_extent H5D__chunk_copy_cb H5D__chunk_collective_fill Also updated RELEASE.txt for the chunk query functions and removed some blank lines in chunk_info.c. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* | | Tweak minimized datset header release info.Jacob Smith2019-01-041-6/+20
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* | | Add dataset header minimization release info.Jacob Smith2019-01-041-0/+11
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* | Merge of logging framework updates.Dana Robinson2018-12-311-1/+0
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* | Replaced all MPI-1 calls with MPI-2 equivalents (from develop).Dana Robinson2018-12-311-1/+7
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* | HDFFV-10632 separate stderr and stdout in testsAllen Byrne2018-12-131-0/+9
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* HDFVIEW-4 add H5A read/write functions to match H5DAllen Byrne2018-12-131-1/+9
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* Moved fixes for incorrectly installed header files to 1.10.Dana Robinson2018-12-061-1/+51
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* Fix for HDFFV-10629Jordan Henderson2018-12-051-0/+10
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* updated with HDFFV-10511Scot Breitenfeld2018-12-041-0/+9
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* Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-231-1/+11
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* Snapshot version 1.10 release 5 (snap1)hdftest2018-11-081-1/+1
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* Merge CMake changes from developAllen Byrne2018-10-231-4/+4
| | | Improved cross-compiling and toolchains
* Fix typos and examples versionsAllen Byrne2018-10-041-1/+1
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* HDFFV-10575, 10332, 10531, 10594 and TRILAB-21Allen Byrne2018-10-042-1/+76
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* HDFFV-10594, 10332, 10531Allen Byrne2018-09-261-2/+26
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* Fix URLAllen Byrne2018-09-181-6/+6
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* Merge pull request #1239 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2018-09-102-477/+680
|\ | | | | | | | | | | | | hdf5_1_10 * commit '3110fd53c0b072e6be250235061a6349921765e9': Add contents of HDF5 1.10.3 RELEASE.txt to HISTORY-1_10.txt and update RELEASE.txt for continuing development.
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