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* 1 8 Merges from develop (#432)Allen Byrne2021-03-051-1/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup whitespace cleanup tools sync * format alignment * initialize vars * revert H5private change * Merge #380 from develop
* HDF5 1 8 merge of recent changes and tools (#353)Allen Byrne2021-02-221-20/+188
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Update supported platforms * Merge PR#3 changes from develop * # WARNING: head commit changed in the meantime Merge gcc 10 diagnostics option from develop Merge CMake changes from develop Merge warnings from develop Merge #318 OSX changes from develop Merge tools changes from develop Merge test macros from develop * Format updates * Fix missing semicolon and format fix * Format update * Correct actions, remove java option * Update autotools build files * Add testfiles * Fix configure issue with make flags * Init fapls to default * Update generated files and fix h5repack id closure * update format
* Hdf5 1 8 (#328)Larry Knox2021-02-092-435/+895
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Updated configure with reconfigure. * Updates and corrections following HDF5 1.8.22 release. * Commit Makefile.ins with so version numbers updated by bin/reconfigure. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Update supported platforms (#302)Allen Byrne2021-02-021-6/+12
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* Improve performance of multiple calls to H5Sget_select_elem_pointlist (#270) ↵Neil Fortner2021-01-221-0/+9
| | | | | | | | | | | (#277) * Cache the pointer to the next point to process after the last call to H5S__get_select_elem_pointlist. This allows the normal process of iterating over the points in batches to be much more efficient, as the library does not need to traverse the entirety of the preceding points every time the funciton is re-entered. * Update RELEASE.txt for point selection iteration performance fix.
* Stat st blocks fix 18 (#250)Larry Knox2021-01-111-5/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Restores maintainer mode in the autotools (#200) Maintainer mode should be enabled in development branches. Also adds helpful commenting. Add script bin/switch_maint_mode. Add file changes generated by bin reconfigure in src/H5Edefin.h src/H5Einit.h src/H5Epubgen.h src/H5Eterm.h * Update MANIFEST for switch_maint_mode. * Update so numbers to match 1.8.22 release. * Fixes Autotools detection of the st_blocks field in stat (#246) * Fixes Autotools detection of the st_blocks field in stat The Autotools and CMake will now both correctly determine if the stat struct has the st_blocks field and set H5_HAVE_STAT_ST_BLOCKS appropriately. * Fixes a typo in configure.ac Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Update version to 1.8.23-1.Larry Knox2020-12-171-1/+1
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* Update version to 1.8.23-0 after creating release branch for 1.8.22.Larry Knox2020-12-171-1/+1
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* Partial changes to RELEASE.txt for release. (#185)Larry Knox2020-12-161-78/+95
| | | | | * Partial changes to RELEASE.txt for release. * Update supported and tested platforms.
* OESS-98 Update plugin build option (#171)Allen Byrne2020-12-151-35/+54
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* Update HDF5 1.8 copyright headers with updated copyright URL (#148)Larry Knox2020-12-041-1/+1
| | | | | | | * Update URL for COPYING file in copyright headers. * Make fortran copyright headers uniformly spaced. * Update url for Copyright file in c++/src/footer.html.
* hdf5 1 8 release text (#113)Allen Byrne2020-11-233-3843/+3845
| | | | | | | | | * Multiple changes to bring branch up-to-date Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros. * release text updates - mostly whitespace
* Multiple changes to bring branch up-to-date (#87)Allen Byrne2020-11-203-8/+151
| | | | | Correct TARGET variable and CMake config file location. Add option to allow filter plugins to be built inline. Update CMake tools macros.
* URL and options correctionsAllen Byrne2020-10-191-71/+71
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* Snapshot 1.8.22-snap11. Update version to 1.8.22-snap12.Larry Knox2020-10-141-1/+1
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* Merge clang-format changes from developAllen Byrne2020-10-011-0/+9
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* Snapshot 1.8.22-snap10. Update version to 1.8.22-snap11.hdftest2020-08-311-1/+1
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* spellingAllen Byrne2020-08-131-1/+1
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* HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-8/+17
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* Fixed typoBinh-Minh Ribler2020-08-041-1/+1
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* Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-08-021-0/+11
| | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly)
* Merge pull request #2708 in HDFFV/hdf5 from ↵Vailin Choi2020-07-231-0/+14
|\ | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/18_HDFFV-11080-heap-use-after-free-by-the-call to hdf5_1_8 * commit '2d7a23887a6c5121b4dac858a50792a18087c5bf': Incorporate pull request #2693 from develop for the fix to HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads (3) Update MANIFEST (4) Add new test to Cmake
| * Incorporate pull request #2693 from develop for the fix to HDFFV-11080:vchoi2020-07-221-0/+14
| | | | | | | | | | | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads (3) Update MANIFEST (4) Add new test to Cmake
* | Merge from 1.10-1.12-dev - LT parse needs updateAllen Byrne2020-07-202-0/+33
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* Snapshot 1.8.22-snap9. Update version to 1.8.22-snap10.hdftest2020-07-131-1/+1
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* Fix HDFFV-10591Binh-Minh Ribler2020-07-061-0/+12
| | | | | | | | | | | Description: h52gif produced a segfault when a buffer overflow occurred because the data size was corrupted and became very large. This commit added a check on the data size against the buffer size to prevent the segfault. It also added error reporting to h52gif to display an error message instead of silently exiting when the failure occurred. Platforms tested: Linux/64 (jelly)
* Snapshot 1.8.22-snap8.hdftest2020-06-161-1/+1
| | | | Update version to 1.8.22-snap9.
* Snapshot 1.8.22-snap7hdftest2020-05-141-1/+1
| | | | Update version to 1.8.22-snap8.
* OESS-65 Fix packagingAllen Byrne2020-05-081-0/+1
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* Correct CMake versionAllen Byrne2020-04-271-2/+2
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* OESS-65 replace szip with aec szipAllen Byrne2020-04-273-1/+20
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* Merge branch 'hdf5_1_8' of ↵hdftest2020-04-261-0/+28
|\ | | | | | | ssh://bitbucket.hdfgroup.org:7999/~hdftest/hdf5_hft into hdf5_1_8
| * TRILAB-192 - merge changes from developAllen Byrne2020-04-071-3/+5
| | | | | | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
| * Update release note for CMake warningsAllen Byrne2020-04-031-0/+2
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| * Correct extra flags and merge TRILAB-24Allen Byrne2020-04-011-0/+7
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| * TRILAB-192 merging warnings changes from developAllen Byrne2020-03-311-0/+17
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* | Snapshot version 1.8 release 22 (snap6)hdftest2020-04-261-1/+1
|/ | | | Update version to 1.8.22-snap7
* Snapshot version 1.8 release 22 (snap5)hdftest2020-03-251-1/+1
| | | | Update version to 1.8.22-snap6
* Snapshot version 1.8 release 22 (snap4)hdftest2020-03-181-1/+1
| | | | Update version to 1.8-snap5
* Merge changes from other branchesAllen Byrne2020-02-295-94/+108
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* update HDFFV-11029M. Scot Breitenfeld2020-02-181-1/+3
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* HDFFV-11012, sanitize, warnings and tools idsAllen Byrne2020-02-111-3/+21
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* HDFFV-11014, move the description to the first order.Muqun Yang2020-02-061-9/+9
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* HDFFV-11014, add the fix to the release.txt.Muqun Yang2020-02-061-0/+11
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* Merfge changes to CMake test options and add sanitizersAllen Byrne2020-01-201-0/+18
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* Add fix of Jira 10934 to RELEASE.txtChris Hogan2019-12-091-0/+6
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* Snapshot version 1.8 release 22 (snap3)hdftest2019-12-041-1/+1
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* HDFFV-10962 add VS2019 supportAllen Byrne2019-11-184-33/+30
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* HDFFV-10919 merge external storage repackAllen Byrne2019-10-021-1/+7
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* HDFFV-10903 merge S3 from devAllen Byrne2019-09-234-2/+257
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