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hdf5_1_10_5
* commit '5dd2fda18fbbeab95ba44200e48c8202dae65206':
Modify RELEASE.txt in response to PR comments
Updated RELEASE.txt with updates regarding HDFFV-10540
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Description:
Removed dead code and accidentally leftover code
Platforms tested:
Linux/64 (jelly) - very minor
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Description:
- Added a wrapper for H5Ovisit2 to class H5Object
// Recursively visit elements reachable from this object.
void visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_t user_op, void *op_data, unsigned int fields);
- Fixed various typos in documentation
- Removed a pair of [] in a delete statement for a non-array pointer.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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hdf5_1_10
* commit 'f4f8be19125002764715f6cd25372477c729f809':
Script changes from develop
Added TRILABS-111 note
Add HDFFV-10628 known problem
TRILAB-111 Update MPI CMake
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* commit 'e594811caf10c66c12cad7c554854deea262d9cb':
Merge pull request #1522 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
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develop
* commit '7f5741825db0737db5ac46c43009681508a73002':
Add release notes information.
Modification based on feedback from pull request.
Modification based on feedback from pull request.
There is performance issue when closing an object. The slow down is due to the search of the "tag_list" to find out the "corked" status of an object. The fix: (1) Add a counter "num_objs_corked" in the cache structure to track the number of "corked" objects. (2) Skip the search of "tag_list" if the counter is zero i.e. no "corked" objects.
Conflicts:
release_docs/RELEASE.txt
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Added RELEASE.txt entries for new features.
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Description:
Renamed data file with long name to a shorter name.
Revised an entry in RELEASE.txt
Platforms tested:
Linux/64 (jelly)
Darwin (osx1010test)
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
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hdf5_1_10
* commit '217d57d30d2d62f987affcc8859df982dc86d2b3':
CMake fix
Java html fix and cmake update
HDFFV-10686 add note
HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)
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* commit 'd26963b180a052ac063907f95596a7ecad08ef8e':
Add clear objects to ignore tests
Add new clear tests to ignore list
Cleanup variable names
HDFFV-10685 Always set version flags on OSX
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Description:
HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters
Added a check for zero value
HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper
This is actually an Invalid read issue. It was found that the
attribute name length in an attribute message was corrupted,
which caused the buffer pointer to be advanced too far and later
caused an invalid read.
Added a check to detect attribute name and its length mismatch. The
fix does not cover all cases, but it'll reduce the chance of this issue
when a name length is corrupted or the attribute name is corrupted.
HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited
The test for HDFFV-10588 has revealed a bug in H5Ewalk.
H5Ewalk did not stop midway even when the call back function returns
H5_ITER_STOP. This is because a condition is missing from the for
loops in H5E__walk causing the callback functions unable to stop until
all the errors in the stack are iterated. Quincey advised on the final
fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR
to HERROR, and the for loops won't continue when "ret_value" is not 0.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1011test)
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HDFFV-10596-fortran-library-names-differ to develop
* commit 'f4c9ec5d41aa53829617274d3286f1e9a45ae57e':
Add RELEASE.txt entry for HDFFV-10596.
Uninstall should remove the libhdf5_hl_fortran links.
Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
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HDFFV-10652
HDFFV-10443
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hdf5_1_10
* commit '1a50622733c14d89b3fd8c6bab684af9205a3b96':
Fix for daily test failure: too many arguments to function 'H5Gopen1'.
Fix the git merge leftover in RELEASE.txt.
Fix the git merge leftovers in RELEASE.txt.
Fix for HDFFV-10659: The library aborts with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
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after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
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hdf5_1_10
* commit 'f7d530dd275e176e59b26c1b7363ba16b3ab6c9c':
HDFFV-10674, 10664, 10674
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~BMRIBLER/hdf5_1_10_bmr:hdf5_1_10 to hdf5_1_10
* commit '82dd54c26b11245c36f65a044e9b717dc2c337e0':
Revised text
Fixed CVE division-by-zero issues Description: Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All the occurrences are in: H5D__create_chunk_map_single H5D__create_chunk_file_map_hyper H5D__chunk_allocate H5D__chunk_update_old_edge_chunks H5D__chunk_prune_by_extent H5D__chunk_copy_cb H5D__chunk_collective_fill Also updated RELEASE.txt for the chunk query functions and removed some blank lines in chunk_info.c. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
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https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
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Description:
Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All
the occurrences are in:
H5D__create_chunk_map_single
H5D__create_chunk_file_map_hyper
H5D__chunk_allocate
H5D__chunk_update_old_edge_chunks
H5D__chunk_prune_by_extent
H5D__chunk_copy_cb
H5D__chunk_collective_fill
Also updated RELEASE.txt for the chunk query functions and removed
some blank lines in chunk_info.c.
Platforms tested:
Linux/64 (jelly)
Linux/64 (platypus)
Darwin (osx1010test)
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