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* [svn-r18445] Purpose: Fix bug 1637Neil Fortner2010-03-241-0/+2
| | | | | | | | | | Description: Modified algorithm for extending a dataset with early allocation so it only deals with the new chunks. Formerly, it would loop over all chunks, checking to see if each existed in cache and on disk, causing major performance issues with large numbers of chunks. Tested: jam, linew, amani (h5committest)
* [svn-r18432] Snapshot version 1.9 release 63HDF Tester2010-03-211-1/+1
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* [svn-r18406] Snapshot version 1.9 release 62HDF Tester2010-03-141-1/+1
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* [svn-r18395] Purpose: Fix links.c failureNeil Fortner2010-03-091-0/+2
| | | | | | | | | | | | | | | | Description: The core file driver previously matched files only based on the name used to open them, even when a backing store is used. This caused problems in the failing test when it traversed an external link to itself, and did not recognize that it was the same file. Similar tests in links.c were skipped when the core file driver was used. The failure was previously masked by inappropriate file flushes caused by external link traversal. Added code to the core file driver to keep track of low level file information of the backings store to allow for accurate recognition of duplicate files. Also re-enabled all links.c tests for the core file driver. Tested: Fedora (core and sec2 drivers; no time for full commit test, will monitor daily tests)
* [svn-r18376] Purpose: Fix bug 1733Neil Fortner2010-03-051-0/+3
| | | | | | | | | Description: Support for expanding external links was not implemented in H5Ocopy, even though a flag existed for H5Pset_copy_object to enable this. This patch implements this feature. Tested: jam, amani, linew (h5committest); Fedora
* [svn-r18374] Purpose: Fix bugs involving external linksNeil Fortner2010-03-051-0/+2
| | | | | | | | | | | | Description: Previously, the library would reopen the source file when traversing an external link if unable to find the target file otherwise. This has been corrected. Also moved the call to H5F_flush from H5F_try_close to H5F_dest, so the file is only flushed when the last identifier for the file is closed. This prevernts situations where the library could attempt to flush a file with protected metadata. Tested: jam, amani, linew (h5committest); Fedora
* [svn-r18362] Test commit from windowsAllen Byrne2010-03-031-0/+2
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* [svn-r18360] Updated project files and release docs to VS2008 and IVF101 based.Allen Byrne2010-03-033-235/+47
| | | | | | Made change to cpp version of testhdf5 for the elimination of dsets standalone. Tested: Windows
* [svn-r18350] Snapshot version 1.9 release 61HDF Tester2010-02-281-1/+1
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* [svn-r18273] Purpose:Jonathan Kim2010-02-181-0/+2
| | | | | | | | | | | | | | | | | | bugzilla 1754: h5diff: support comparing through links. Description: Fix incorrect (or hanging) behavior in parallel mode when specifying invalid combination of command options. (ex: -v and -q , --no-dangling-links without --follow-links) Add relate test case Update h5diffgentest.c due to add test files this and previous time Note: svn #18266 (prior to this) svn #18164 (original check-in) Tested: h5committest (jam, amani and linew)
* [svn-r18266] Purpose:Jonathan Kim2010-02-161-2/+3
| | | | | | | | | | | | | | | bugzilla 1754: h5diff: support comparing through links. (original check-in svn revision #18164) Description: fix the hang issue in parallel mode when compare external-link. add --no-dangling-links option. add test cases (#450-#459) relate to the new option. improve test script to check exit code. update --help relate to the new options. correct some indentations. Tested: h5committest (jam, amani and linew)
* [svn-r18262] Purpose: Fix bug in b-tree codeNeil Fortner2010-02-161-0/+3
| | | | | | | | | | | | Description: In certain cases, removal of an object in a v1 b-tree would cause the leftmost key in the right neighbor to be overwritten. While this did not pose a problem for group b-trees, with chunked datasets it would overwrite the offset value of the neighbor's leftmost child, causing corruption. Reworked the code to differentiate between b-trees whose children are fundamentally associated with their left key and those who are associated with their right key. Tested: jam, linew, amani (h5committest)
* [svn-r18217] Snapshot version 1.9 release 60HDF Tester2010-02-071-1/+1
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* [svn-r18199] Snapshot version 1.9 release 59HDF Tester2010-01-311-1/+1
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* [svn-r18167] Update MANIFEST and RELEASE.txt for svn r18164 and r18165Jonathan Kim2010-01-261-0/+3
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* [svn-r18120] Snapshot version 1.9 release 58HDF Tester2010-01-171-1/+1
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* [svn-r18100] SnapshotHDF Tester2010-01-101-1/+1
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* [svn-r18059] SnapshotHDF Tester2010-01-031-1/+1
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* [svn-r18047] SnapshotHDF Tester2009-12-201-1/+1
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* [svn-r18012] SnapshotHDF Tester2009-12-131-1/+1
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* [svn-r17985] I put in the bug fix info for #1584. No test is needed.Raymond Lu2009-12-101-2/+5
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* [svn-r17973] SnapshotHDF Tester2009-12-071-1/+1
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* [svn-r17936] Updated AIX compilers information.Albert Cheng2009-11-271-5/+5
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* [svn-r17934] Updated with new ibm compiler configure changes.Albert Cheng2009-11-261-0/+4
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* [svn-r17905] Purpose:Jonathan Kim2009-11-201-0/+2
| | | | | | | | | | | | | | | | Fix Bug1672 - Display garbage value on LE machine for BE data. Description: Casuing by calling diff_dataset twice when -r or no option was given. Change to call it once which fix the problem. It also improves the performance. (diffing time in half) According further test, it also occurred on BE machine as well and it seems occruing only with the BE data attached to Bugzilla. Don't know how the file was created. Anyway this fix will prevent from diffing with garbage values in similiar potential case. Tested on: linux32 (jam) , linux64 (almani), solaris (linew)
* [svn-r17902] SnapshotHDF Tester2009-11-171-1/+1
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* [svn-r17835] Maintenance: More cleanup in the configuration table.Elena Pourmal2009-11-051-7/+2
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* [svn-r17834] Maintenance: Updated system information for Solaris and Mac IntelElena Pourmal2009-11-051-7/+8
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* [svn-r17819] Purpose:Mike McGreevy2009-11-041-13/+11
| | | | | | | | | | | | Updating RELEASE.txt Description: Clarifying explanation of --enable-static-exec behavior. Tested: Doc only, none needed.
* [svn-r17818] Removed Zeus and ubgl entries since they were not tested any more.Albert Cheng2009-11-041-3/+4
| | | | Added AIX known problem of testcheck_version.sh failure.
* [svn-r17811] Update RELEASE.txt for fractal heap filtering changes (r17623)Neil Fortner2009-11-031-0/+4
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* [svn-r17801] Added known problem of h5repack in AIX -q32 platform.Albert Cheng2009-11-021-0/+7
| | | | (forgot to add the text in the last commit.)
* [svn-r17800] Removed support and known problems of the IRIX, IRIX64 and ↵Albert Cheng2009-11-021-37/+0
| | | | | | | Tungsten platforms since they have retired. Added known problem of h5repack in AIX -q32 platform.
* [svn-r17771] Add bug number to note in RELEASE.txt.Neil Fortner2009-10-281-1/+1
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* [svn-r17764] Purpose: Fix bug 1483Neil Fortner2009-10-281-0/+4
| | | | | | | | | | | | Description: H5HG_load made improper assumptions about the ordering of object indices, namely that they are in order. Not only is this not guaranteed by the file format spec, but this condition can be violated if id's "wrap around" which can happen when overwriting VL data. H5HG_load has been fixed to handle any order of indices. Also fixed some other bugs involving allocation of global heaps in memory. Tested: jam, linew, amani (h5committest)
* [svn-r17763] Minor formatting change in RELEASE.txt.Neil Fortner2009-10-271-1/+1
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* [svn-r17760] Purpose: Fix problem with H5TB APINeil Fortner2009-10-271-0/+2
| | | | | | | | | | | Description: The H5TB API makes some improper assumptions about the order of compound datatype members. Namely, it assumes that members remain in the order in which they were inserted. Unfortunately, this assumption is inherent in the design of the interface. The library has been patched so that this assumption holds in situations relevant to H5TB. Tested: jam, linew, amani (h5committest)
* [svn-r17758] Remove .NET references from windows text files and batch filesAllen Byrne2009-10-273-244/+16
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* [svn-r17742] Snapshot version 1.9 release 50HDF Tester2009-10-251-1/+1
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* [svn-r17670] Snapshot version 1.9 release 49Larry Knox2009-10-181-1/+1
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* [svn-r17628] Snapshot version 1.9 release 48Larry Knox2009-10-111-1/+1
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* [svn-r17619] Add comments about h5diff change made for epsilon.Peter Cao2009-10-081-0/+3
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* [svn-r17616] Purpose:Mike McGreevy2009-10-081-0/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | CFLAGS overhaul Description: Modified the way configure handles CFLAGS. (note: all changes also apply to FCFLAGS, CXXFLAGS, CPPFLAGS, and LDFLAGS). 1. The configure process will now always preserve a user's CFLAGS environment variable setup. Any additional flags necessary for compilation added at configure time will be passed into the Makefiles as AM_CFLAGS, which is an automake construct to be used in addition to CFLAGS. This will allow a user to have the final say, as CFLAGS will always appear later in the compile line than AM_CFLAGS. Additionally, setting CFLAGS during make will no longer completely erase all flags set by configure, since they're maintained in AM_CFLAGS. 2. Additionally, where possible, flags previously being assigned directly into CFLAGS (and thus propagating into h5cc) have now been redirected into H5_CFLAGS, so they're used ONLY for compiling hdf5, and not embedded into the h5cc wrapper script as well. *Note that H5_CFLAGS ultimately is assigned into AM_CFLAGS for use in the Makefiles. Complete description of changes and build process will be included in a Configure Document that Elena and I are working on. 3. Removed unsupported config files. This includes: config/dec-osf* config/hpux11.00 config/irix5.x config/powerpc-ibm-aix4.x config/rs6000-ibm-aix5.x config/unicos* 4. Modified configure summary to display additional values. Specifically, appropriate AM_* variables are being shown, as well as H5_FCFLAGS and H5_CXXFLAGS, which were for some reason not already present. Tested: - H5committest - Tested on all THG / NCSA machines, using several combinations of the more prominent configure options (c++, fortran, szip, threadsafe, parallel, et cetera). (Thanks to Quincey for rysnc testing setup!) - With regards to new automated testing, anything *necessary* for compilation will be caught by the daily tests as it stands now. (i.e., if LDFLAGS is not properly set when szip is used, linking will fail). Additionally, with regards to which flags get into h5cc, if any *necessary* flags have been improperly removed, then daily tests should fail during make installcheck. Additional machine-specific desired behaviors and/or checks may have to be set up separately within the daily tests, so this is something to work on.
* [svn-r17615] Updated with H5Pget_preserve fix information.Albert Cheng2009-10-081-0/+1
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* [svn-r17606] Code Cleanup:Albert Cheng2009-10-071-11/+2
| | | | | | | | TFLOPS machine has retired long ago. Removed all code specific for its support. Test: h5committested.
* [svn-r17589] Snapshot version 1.9 release 47Larry Knox2009-10-041-1/+1
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* [svn-r17585] Purpose: Fix bug 1597Neil Fortner2009-10-021-0/+2
| | | | | | | | | | | Description: When copying a dataset using a vlen inside a compound, the various dataset copying callbacks would allocate a background buffer but would not use it when converting from disk to memory, only memory to disk. This caused an assertion failure as compounds always need a background buffer. These callbacks have been modified to use the background buffer for both conversions. Tested: jam, linew, smirom (h5committest)
* [svn-r17571] Purpose:Mike McGreevy2009-10-011-0/+4
| | | | | | | | | | | | | | Makefile Bug Fix Description: Added $(EXEEXT) extension to H5detect when it's executed to generate H5Tinit.c so it works correctly on platforms that require the full extension when running executables. Tested: h5committest, mingw, and user-verified (via submitted patch).
* [svn-r17567] Purpose:Mike McGreevy2009-10-011-0/+4
| | | | | | | | | | | | | | | | | | | | | Configure Fix Description: Modified configure to set FC and CXX to "no" when fortran and c++ are not being compiled, respectively. This will prevent configure from running some checks on these compilers when they are not being used. This fixes a problem that was occuring when FC and/or CXX are set to a nonexistant or invalid compiler. Even if the languages were disabled, a libtool test would fail, thus preventing libtool from properly linking any libraries, yet configure would not flag an error message due to this because the languages were disabled. Tested: - h5committest (jam, smirom, linew) - manually eyeballed configure output and logfile.
* [svn-r17566] Fix for Bug 1562. H5DSis_attached needed to account for ↵Allen Byrne2009-10-011-0/+2
| | | | | | | | | platform dependent types. Added test and test files for LE and BE dimension scales. Reworked part of test_ds file as part of debug. Added missing H5Tclose in region reference routines. H5DS.c checked for other locations which need to account for platform dependent types in dealing with ds_list_t. Added generator program for test files of LE and BE dimension scales. Tested: local linux, h5committest
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