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* Merge pull request #2771 in HDFFV/hdf5 from ↵Binh-Minh Ribler2020-08-161-0/+10
|\ | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr:hdf5_bmr_HDFFV-10933 to develop Fixed HDFFV-10933 * commit '16349c5fddce8a74644e18d01d7ea8186aaaa255': Fixed HDFFV-10933
| * Fixed HDFFV-10933Binh-Minh Ribler2020-08-141-0/+10
| | | | | | | | | | | | | | | | | | | | | | Description: Updated the original fix by Kent Y. in commit 200a77d8c3e51663c375aafffff607ae9b438f4e - used internal functions instead of public API - moved some code into the subroutine for a cleaner look. - added test to dsets.c Platforms tested: Linux/64 (jelly)
* | HDFFV-9984 Add options to merge/prune external links during repackAllen Byrne2020-08-141-0/+11
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* Merge pull request #2753 in HDFFV/hdf5 from ~EPOURMAL/hdf5_ep:develop to developElena Pourmal2020-08-141-2/+6
|\ | | | | | | | | | | | | * commit 'c6248cfb6975a6ecadf0259390247ce05dc13c4b': Addresseda Dana's comments from the pull request. Fixed several typos in the comments found by Larry during the review. The H5DSis_scale function was updated to return "not a dimension scale" (0) instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are not written according to Dimension Scales Specification (HDFFV-10436).
| * The H5DSis_scale function was updated to return "not a dimension scale" (0)Elena2020-08-121-2/+6
| | | | | | | | | | instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are not written according to Dimension Scales Specification (HDFFV-10436).
* | spellingAllen Byrne2020-08-131-1/+1
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* | HDFFV-11127 - force RTLD_LOCAL in dlopenAllen Byrne2020-08-121-3/+12
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* Renames BEST-EFFORT to BEST_EFFORT for file locking env varDana Robinson2020-08-061-3/+3
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* Squash merge of file locking fixesDana Robinson2020-08-031-1/+110
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* Merge pull request #2711 in HDFFV/hdf5 from bmr-HDFFV-11120 to developBinh-Minh Ribler2020-07-291-0/+11
|\ | | | | | | | | | | | | | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) * commit '707e30c6be1954c0027374124207e46caae68cbc': Fixed typos in error messages. Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
| * Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-07-221-0/+11
| | | | | | | | | | | | | | | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly) SunOS 5.11 (emu)
* | Merge pull request #2714 in HDFFV/hdf5 from ↵Dana Robinson2020-07-281-0/+15
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5s_set_extent_none to develop * commit 'e4603ff8a171e82de6373ba6eddcf59d5eeab5aa': Updated the Java tests to deal with H5Sset_extent_none changes Fixed additional typos in tselect.c comments. Fixes typo in tselect.c Updates H5Sset_extent_none() to set H5S_NULL
| * | Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-281-0/+15
| |/ | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
* | Add release notes for toolsAllen Byrne2020-07-201-2/+38
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* Fix for jira issue HDFFV-11080:vchoi2020-07-141-0/+14
| | | | | (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
* HDFFV-11116 Add option for install location of Fortran MOD filesAllen Byrne2020-07-092-3/+36
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* Lib files needed are now copied to a subdirectory in the java/testLarry Knox2020-07-021-0/+8
| | | | | | directory, and on Macs the loader path for libhdf5.xxxs.so is changed in the temporary copy of libhdf5_java.dylib. Fix for HDFFV-11063
* - added comment to explain a klugeBinh-Minh Ribler2020-06-291-1/+9
| | | | - added the associated entry to release notes
* Added note for HDFFV-10591.Binh-Minh Ribler2020-06-191-0/+12
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* OESS-65 fix packaging config filesAllen Byrne2020-05-081-0/+1
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* Remove old szip lineAllen Byrne2020-04-231-1/+0
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* OESS-65 add option to use AEC library in place of SZipAllen Byrne2020-04-223-0/+20
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* Trim trailing whitespaceQuincey Koziol2020-04-204-3068/+3068
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* Merge branch 'develop' of ↵Jacob Smith2020-04-071-0/+39
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| * Move intel warnings to subfolder, update autotools filesAllen Byrne2020-04-061-1/+3
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| * Corrected noteAllen Byrne2020-04-061-3/+3
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| * Update release note for CMake warningsAllen Byrne2020-04-031-0/+2
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| * TRILAB-192 add comparable clang flagsAllen Byrne2020-03-271-0/+2
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| * TRILAB-24 use CHECK_STRUCT_HAS_MEMBERAllen Byrne2020-03-241-0/+7
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| * TRILAB-192 add release noteAllen Byrne2020-03-241-0/+15
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| * Fixed the RELEASE.txt note for HDFFV-11057Dana Robinson2020-03-181-9/+8
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| * Fix shutdown errors when using the HDF5_VOL_CONNECTOR environmentDana Robinson2020-03-181-0/+12
| | | | | | | | | | variable to set a dynamically loaded plugin as the default VOL connector. Fixes HDFFV-11057
* | Add Splitter VFD to library.Jacob Smith2020-03-131-0/+14
|/ | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
* Update examples and fix old version references.Allen Byrne2020-02-268-209/+213
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* Update Windows platformsAllen Byrne2020-02-241-5/+1
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* HDFFV-11036 add release noteAllen Byrne2020-02-241-1/+8
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* TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-212-1/+8
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* Merge developJordan Henderson2020-02-214-37/+237
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| * Corrected INTERFACE INTENT(IN) to INTENT(OUT) for buf_size ↵M. Scot Breitenfeld2020-02-181-0/+3
| | | | | | | | | | | | inh5fget_file_image_f. HDFFV-11029
| * Update sanitizer note.Allen Byrne2020-02-111-3/+12
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| * HDFFV-11014, fix the h5repack issue that misses a few attributes during the ↵Muqun Yang2020-02-071-0/+10
| | | | | | | | repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt.
| * Add RELEASE.txt note for token refactoring changesJordan Henderson2020-02-051-0/+44
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| * HDFFV-11012 - add release noteAllen Byrne2020-02-051-0/+7
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| * HDFFV-10996 add release noteAllen Byrne2020-02-041-0/+6
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-01-241-7/+4
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '590aaff33046df99a4d88ba59e4b461e060b36e4': Optimized the floating point comparisons a little bit. Fix for failing h5diff tests involving floating-point compares. Removed H5_DEC_ENUM Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings."" Revert "Moved -Wunsuffixed-float-constants to the developer warnings." Moved -Wunsuffixed-float-constants to the developer warnings. Fixed a bug in testpar/t_cache.c concerning checking expected vs. actual cache entry reads and writes.
| | * Revert "Revert "Moved -Wunsuffixed-float-constants to the developer warnings.""Dana Robinson2020-01-231-7/+4
| | | | | | | | | | | | This reverts commit 6486e06545bf637d46e18a787395542f4fca143a.
| * | Note for common warnings filesAllen Byrne2020-01-171-0/+9
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| * HDFFV-11001 need to qualify all by parallel or serial typesAllen Byrne2020-01-151-8/+8
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| * HDDFV-11001 add noteAllen Byrne2020-01-151-0/+14
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| * Added JIRA noteAllen Byrne2020-01-131-0/+8
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