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* [svn-r1802] Changes since 19991019Robb Matzke1999-11-011-0/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./configure.in ./configure [REGENERATED] Added more checking for `make' features. ./Makefile.in ./doc/Makefile.in ./doc/html/Makefile.in ./doc/html/Tutor/Makefile.in ./examples/Makefile.in ./pablo/Makefile.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in ./config/commence.in ./config/conclude.in ./config/depend.in [REMOVED] ./config/depend1.in [NEW] ./config/depend2.in [NEW] ./config/depend3.in [NEW] ./config/depend4.in [NEW] ./config/dependN.in [NEW] The directory search stuff was moved into commence.in, thereby shortening the Makefile.in prologues. ./doc/html/Dependencies [NEW] ./doc/html/Tutor/Dependencies [NEW] ./examples/Dependencies [NEW] ./src/Dependencies [NEW] ./test/Dependencies [NEW] ./testpar/Dependencies [NEW] ./tools/Dependencies [NEW] The `.distdep' files were all renamed to `Dependencies' to make them more obvious. They are required (but may be empty) in every directory that has a Makefile.in that ends with @CONCLUDE@ (you'll get an obvious error from make if you forgot to create one). ./bin/trace ./src/H5.c Added H5E_major_t and H5E_minor_t although tracing only prints the integer value. ./src/H5E.c ./src/H5Epublic.h Added tracing information. ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDgass.c ./src/H5FDmpio.c ./src/H5FDsec2.c ./src/H5FDstdio.c Fixed places where FUNC_LEAVE() evaluated it's argument more than once. Added tracing information. Wrapped long lines. ./config/gnu-flags Fixed a syntax error when we don't have a gnu compiler.
* [svn-r1573] Changes since 19990817Robb Matzke1999-08-171-1/+6
| | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c ./src/H5F.c ./src/H5Fistore.c ./src/H5Smpio.c Incorporated previous changes into MPIO special cases. These are mostly due to the fact that most of the members of the file->shared->fapl struct have been moved into the file->shared->file->shared struct (`file' is an H5F_t*). ./src/H5I.c Fixed a bug with closing the library w.r.t. the VFL stuff. The VFL layer introduced reference counts on object ID's and the library termination functions freed these objects in the wrong order. Now H5I_clear_group() does not normally remove objects with a reference count larger than one because it assumes that those objects are currently in use by the library.
* [svn-r1572] Changes since 19990810Robb Matzke1999-08-171-6/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5FDmulti.c [NEW] ./src/H5FDmulti.h [NEW] ./src/Makefile.in ./src/hdf5.h The split driver was reimplemented as a more general "multi" driver which is capable of splitting data into multiple files like the family driver except the partioning is done by memory usage type instead of address. The H5Pset_fapl_split() function just calls H5Pset_fapl_multi() with arguments which prepare to split the address space into two files: meta and raw data. This is the first version. I plan to allow the open() call to relax a bit which would allow one to open an hdf5 file when only the meta-data file is present. This would allow a very large file to be split and stored on tape and the relatively small meta file to be mirrored on disk to allow limited browsing of the file (any request for raw data would fail). ./src/H5private.h ./src/H5F.c ./src/H5FD.c ./src/H5FDprivate.h ./src/H5FDpublic.h ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDmpio.c ./src/H5FDsec2.c Added the ability for a file driver to store information in the superblock which would be needed if the file were opened again later for reading. The format is driver-defined which allows users to extend it however they like. ./doc/html/H5.format.html Added information about the new driver information block of the superblock. This is where file drivers store information they need in order to reopen the file later. ./src/H5F.c ./src/H5Fprivate.h ./src/H5FD.c ./src/H5FDprivate.h ./src/H5FDpublic.h ./src/H5FDcore.c ./src/H5FDfamily.c ./src/H5FDmpio.c ./src/H5FDsec2.c ./src/H5Fistore.c ./src/H5R.c The file access properties and the file access property list were decoupled, which allows the property list to more cleanly contain properties for various levels of the file and which allows the property list to be modified more cleanly when opening files. ./src/H5.c ./src/H5FDpublic.h Removed H5FD_MEM_META and H5FD_MEM_GROUP since they're never used. ./src/H5D.c Changed the way we detect the MPIO driver in all these special cases. ./src/H5F.c ./src/H5Rpublic.h ./test/tfile.c The default file sizeof(offset) was changed to be a function of haddr_t instead of hsize_t. THE H5RPUBLIC.H DEFINITIONS WILL HAVE PROBLEMS IF THE USER CREATES A FILE WITH NON-DEFAULT OFFSET AND SIZE SIZES! ./src/H5F.c Fixed an uninitialized memory access bug in file closing related to the VFL. ./src/H5T.c ./src/H5Tpublic.h Added an H5T_NATIVE_HADDR predefined datatype which corresponds to the `haddr_t' type. ./test/Makefile.in Reformatted long lines. ./test/big.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c Removed the H5F_ACC_DEBUG flag from file creation/open calls. ./test/big.c Plugged a memory leak. ./test/h5test.c Added support for the `multi' driver. Removed #warning about not having the stdio driver. Plans are to not implement it since the sec2 driver serves the same purpose and testing didn't show any difference in execution times between the two.
* [svn-r1568] Changes since 19990730Robb Matzke1999-08-101-50/+78
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- This extensive change is the virtual file layer implementation. I've ported and tested the sec2, family, and core drivers and only ported the mpio driver (Albert will test it). So if you need MPIO I would recommend sticking with the previous version for a while. You will get a few compile warnings about split and stdio drivers not being implemented and possibly tracing information not inserted in some of the drivers. You can safely ignore them but I plan to fix them. I'm still working on the split driver because I just realized that it needs a part of the VFL that isn't written yet. Documentation is being updated also because there were some minor changes (mostly just name changes). It should be available on my web site later this week. ./MANIFEST ./src/Makefile.in ./src/hdf5.h ./src/H5Flow.c [REMOVED] ./src/H5Fstdio.c [REMOVED] ./src/H5Fsec2.c [REMOVED] ./src/H5Fsplit.c [REMOVED] ./src/H5Fmpio.c [REMOVED] ./src/H5Ffamily.c [REMOVED] ./src/H5Fcore.c [REMOVED] ./src/H5MFpublic.h [REMOVED] ./src/H5FD.c [NEW] ./src/H5FDcore.c [NEW] ./src/H5FDcore.h [NEW] ./src/H5FDfamily.c [NEW] ./src/H5FDfamily.h [NEW] ./src/H5FDmpio.c [NEW] ./src/H5FDmpio.h [NEW] ./src/H5FDprivate.h [NEW] ./src/H5FDpublic.h [NEW] ./src/H5FDsec2.c [NEW] ./src/H5FDsec2.h [NEW] Removed/added files for virtual file layer. ./bin/trace ./src/H5.c Removed unused public datatypes and added new VFL public datatypes. Changed an error message. ./config/BlankForm ./config/dec-flags ./config/gnu-flags ./config/hpux10.20 ./config/hpux9.03 ./config/irix5.x ./config/irix6.x ./config/solaris2.x ./config/unicosmk Removed the H5F_OPT_SEEK and H5F_LOW_DFLT constants from the configuration since they're no longer applicable. The default file driver is always the sec2 driver and it always optimizes calls to lseek() or lseek64(). ./config/depend.in C preprocessor errors generated during automatic dependency building are sent to /dev/null to prevent them from appearing twice in the make output. ./src/H5AC.c ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Oshared.c ./src/H5T.c ./src/H5detect.c ./test/ohdr.c Changed H5F_ADDR_UNDEF to HADDR_UNDEF to be more consistent with the `haddr_t' datatype which is now a public type. ./src/H5D.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5Tconv.c ./test/cmpd_dset.c ./test/dsets.c ./test/overhead.c ./test/tselect.c ./test/tvltypes.c The H5P_DATASET_XFER constant was changed to H5P_DATA_XFER because the properties apply to all types of I/O operations, not just datasets. ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5R.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Spoint.c ./src/H5Sprivate.h ./test/big.c ./test/h5test.c ./test/istore.c ./testpar/t_dset.c ./testpar/t_file.c ./tools/h5debug.c ./tools/h5ls.c Modified to work with the virtual file layer by calling H5FD_* functions instead of H5F_low_* functions and by passing file access and data transfer properties by object ID instead of pointer. Changed H5D_transfer_t to H5FD_mpio_xfer_t since the COLLECTIVE vs. INDEPENDENT transfer mode is specific to the MPIO file driver. Moved MPIO-specific stuff into the MPIO driver. ./src/H5B.c ./src/H5D.c ./src/H5Fprivate.h The H5F_mpio_* private functions were renamed and placed in the H5FDmpio driver except those which appeared in H5Smpio.c. ./src/H5E.c ./src/H5Epublic.h Added major error number H5E_VFL for virtual file layer related errors. ./src/H5F.c ./src/H5Fprivate.h Changed the logic that controls whether the boot block is written. Instead of assuming that the first call to write the boot block is only to allocate space, I've added a function argument which makes this explicit. Changed the way files are compared so that a driver-defined comparison function can be called. Files which belong to different drivers are always considered different. Removed H5F_driver_t since file drivers are now identified by object ID instead of a special non-user-extendible datatype. Removed all the hard-coded low-level file properties which have been replaced by the various file drivers. ./src/H5I.c ./src/H5Iprivate.h Added the H5I_inc_ref() which was removed a few months ago since we finally have a use for it. ./src/H5Ipublic.h Added the H5I_VFL object ID type to identify file drivers in the virtual file layer. ./src/H5MF.c ./src/H5MFprivate.h Moved all the allocation/deallocation code into the virtual file layer which allows file drivers to override much of it. ./src/H5P.c ./src/H5Ppublic.h Moved file driver-specific code into the various file driver files. The H5Pcopy() and H5Pclose() functions make calls into the virtual file driver to manage the memory for driver-specific file access and data transfer properties. ./src/H5private.h ./src/H5public.h The `haddr_t' type is now public. ./test/tfile.c Added a few more comments.
* [svn-r1548] Changes since 19990727Robb Matzke1999-07-281-12/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c [1.3] ./src/H5AC.c [1.3] ./src/H5ACprivate.h [1.3] ./src/H5B.c [1.3] ./src/H5Bprivate.h [1.3] ./src/H5D.c [1.3] ./src/H5F.c [1.3] ./src/H5Farray.c [1.3] ./src/H5Fcore.c [1.3] ./src/H5Ffamily.c [1.3] ./src/H5Fistore.c [1.3] ./src/H5Flow.c [1.3] ./src/H5Fmpio.c [1.3] ./src/H5Fprivate.h [1.3] ./src/H5Fsec2.c [1.3] ./src/H5Fsplit.c [1.3] ./src/H5Fstdio.c [1.3] ./src/H5G.c [1.3] ./src/H5Gent.c [1.3] ./src/H5Gnode.c [1.3] ./src/H5Gprivate.h [1.3] ./src/H5Gstab.c [1.3] ./src/H5HG.c [1.3] ./src/H5HGprivate.h [1.3] ./src/H5HL.c [1.3] ./src/H5HLprivate.h [1.3] ./src/H5MF.c [1.3] ./src/H5MFprivate.h [1.3] ./src/H5O.c [1.3] ./src/H5Oattr.c [1.3] ./src/H5Ocont.c [1.3] ./src/H5Odtype.c [1.3] ./src/H5Oefl.c [1.3] ./src/H5Olayout.c [1.3] ./src/H5Oprivate.h [1.3] ./src/H5Oshared.c [1.3] ./src/H5Ostab.c [1.3] ./src/H5P.c [1.3] ./src/H5R.c [1.3] ./src/H5Smpio.c [1.3] ./src/H5T.c [1.3] ./src/H5Tvlen.c [1.3] ./src/H5private.h [1.3] ./test/dtypes.c [1.3] ./test/gheap.c [1.3] ./test/istore.c [1.3] ./test/lheap.c [1.3] ./test/ohdr.c [1.3] ./tools/h5debug.c [1.3] File addresses (the `haddr_t' type) are passed by value instead of by reference. The type is no longer a struct. This is one of the preliminary changes needed for the Virtual File Layer stuff. ./src/H5Fprivate.h [1.3] ./src/H5Flow.c [1.3] Some address functions were rewritten as macros.
* [svn-r1224] Changes since 19990426Robb Matzke1999-04-271-0/+35
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5tools.c ./tools/h5tools.h Finally fixed a long-standing bug that caused core dumps if a compound datum rendered to more than some number of characters (we kept bumping up the limit at the risk of violating stack size limits on some machines). The fix works only on systems that have the vsnprintf() function (otherwise a 4kB limit is imposed, which if violated probably dumps core). If vsnprintf() is present then the library dynamically allocates space for the output string. Also made it possible to control how compound data is rendered across multiple lines of output by allowing the caller to specify where optional line-breaks get inserted. The output functions split up the value at one or more optional line-breaks to prevent it from wrapping around the screen. If a datum doesn't fit on the current line but would fit on the next line then it is printed on the next line regardless of whether optional line-breaks would have prevent wrapping around the screen. This makes it easier to find the beginnings of compound data values. This feature is disabled by default but can be enabled by the application. If a datum doesn't fit on the current line and the previous datum also occupied more than one line then we move to the next line before printing. This makes it easier to find the beginnings of compound data values but prevents the output from looking fragmented if there are only a few long values among mostly short values. This feature is disabled by default but can be enabled by the application. The application can control the printf() formats used for all the native data types. The defaults are what the library used to use: %g, %ld, %lu, %d, and %u ./tools/h5ls.c Compound datatype values can now be split across multiple lines of output instead of just wrapping. Also, when lots of compound values are too long they all start at the beginning of a line. This only required about 10 lines of changes in the setup for tools library calls (I didn't modify the h5dump program because it uses its own version of the tools library that forked off long ago). Added code for Win32 which is unable to cast `unsigned long long' to `double'. If the dataset size exceeds (2^63)-1 then the percent utilization is not displayed (this is easily possible with chunked datasets). This is untested yet. ./configure.in ./src/H5config.h.in ./src/H5.c ./src/H5private.h Check for vsnprintf() and provide a simple, stupid definition if it isn't available. The stupid definition just calls vsprintf() and ignores the second argument. This can result in buffer overflows in h5ls and h5dump since vsprintf() is an unsafe function (and anyone can create an hdf5 file that runs an arbitrary command from h5ls and h5dump in that case)! ./config/conclude.in Remove more *.o files for `make clean' ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c Cleaned up a memory leak during H5_term_library() by allowing H5I_clear_group() to skip items that couldn't be freed. This allows the item to remain in the group until we can free it later. ./src/H5F.c The H5F_close_all() function fails if a file cannot be closed.
* [svn-r1184] Changes since 19990402Robb Matzke1999-04-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/commence.in ./config/conclude.in ./test/Makefile.in ./tools/Makefile.in Fixed so private libraries are not installed publicly. The installation directories `bin', `include', and `lib' are created mode 755. ./src/H5.c ./src/H5A.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5R.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Vprivate.h ./src/H5Z.c ./src/H5detect.c ./src/H5private.h ./test/chunk.c ./test/dsets.c ./test/dtypes.c ./test/h5test.c ./test/overhead.c ./test/ragged.c ./test/tattr.c ./tools/h5dump.c ./tools/h5findshd.c ./tools/h5ls.c Changed `__unused__' to `UNUSED' to fix a conflict with GNU header files. ./src/H5Tpkg.h ./test/h5test.h Removed __unused__ from forward function declarations. ./src/H5P.c Removed a comment about restrictions for the type conversion temporary buffers. Thanks to Quincey, the comment no longer applied. ./src/H5T.c Relaxed the H5Tpack() a little so it would pack compound data structures that had non-transient atomic members. ./tools/h5ls.c Added a `-g' (or `--group') flag that causes information to be printed about the specified group instead of the group's contents. (sort of like Unix's `ls -d'). The `-g' can be used in combination with `-r' to print information about the group and its contents.
* [svn-r1171] Changes since 19990330Robb Matzke1999-04-021-1/+1
| | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5A.c ./src/H5D.c The `bkg' buffers are zeroed before calling the type conversion function. This fixes a problem where reading a file compound data structure into memory results in garbage between the members. ./src/H5I.c Fixed H5I_clear_group() so it removes entries even when a free callback is not registered. This fixes fixes an `infinite loop closing library' warning message. ./src/H5.c Added ellipses to the end of the infinite loop message.
* [svn-r1169] ./configure.inRobb Matzke1999-03-301-53/+34
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5D.c ./src/H5O.c Removed H5AC, H5B, and H5T from the default list of packages to debug (because they're pretty expensive debugging), and added H5O. Also fixed a bug for undefined variable in H5D when H5S debugging is turned on but H5T debugging is turned off. ./config/conclude.in Fixed installation of header files for building in a directory other than the source directory. This fixes a bug where H5config.h wasn't being installed. ./src/H5.c ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Tprivate.h ./src/H5Z.c ./src/H5detect.c ./src/H5private.h Changed the way the library shuts down again. Now it handles cycles between packages and isn't so sensitive to dependencies between packages. A package might shut down only to be restarted to process a request from some other package being shut down. Loops are detected after 100 iteractions and the shutdown is aborted with a message on standard error. This also makes it a lot easier to debug. ./src/H5A.c Fixed H5A_write() and H5A_read() so they pass a non-null background buffer to the conversion functions. This is necessary when an attribute has a compound data type. ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c Reindented new Win32 stuff. ./src/H5Odtype.c Fixed a bug when enumeration types are used in a compound data type. The byte pointer wasn't incremented after the type information was written. ./tools/h5ls.c Compound data types display their total size because it's not always obvious from looking at the members. Scalar attributes show their space as `scalar' instead of `{}'. The index value is not printed for attributes that have only a few values. Instead the word `Data:' is printed on the first line of attribute data. Named types display their data type only if verbose output was requested.
* [svn-r1130] Make HDsnprintf to be compiled only if snprintf is not availableAlbert Cheng1999-03-091-0/+2
| | | | | in the local system. Tested in O2K.
* [svn-r1087] Changes since 19990218Robb Matzke1999-02-201-6/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5F.c ./src/H5private.h ./src/H5Ipublic.h ./src/H5O.c Fixed a rather nasty bug with file closing that caused the file boot block to be updated incorrectly, effectively truncating the file. The bug I fixed was triggered by: 1. Create a file, F 2. Open an object, X 3. Close file F 4. Reopen file F for read/write. 5. Create and close some objects 6. Close file F 7. Close library (exit). Step 3 pended the close because object X is still open, but the file ID was removed from the H5I_FILE ID group. Step 4 created a new file because it didn't see any matching file on the H5I_FILE ID group. Step 5 extends the file. Step 6 writes the new file boot block to disk. Step 7 closes object X and completes the close from step 3, writing the old boot block information to disk. The new behavior is that step 3 moves the file from the H5I_FILE group to the H5I_FILE_CLOSING group. Step 4 searches both groups and finds the file. Step 5 extends the file using the same H5F_file_t struct as step 3. Step 6 closes the H5F_t struct opened in step 3 but not the H5F_file_t struct shared by steps 1 and 3. Step 7 closes object X which closes the H5F_file_t from step 1, flushing the boot block which was shared by all steps. ./src/H5F.c Added some bulletproofing to file reference counting and removed comments which no longer apply. Added H5F_flush_all() and H5F_close_all() which apply to all files. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c Added the new H5I_free_t data type to describe the function type to be passed as the `free_func' argument to H5I_init_group(). ./src/H5I.c Bulletproofed the object removal functions. Removed comments which no longer apply. Changed global variable names so they don't violate the naming scheme. Added H5I_debug() that prints the contents of an ID group. Removed H5I_inc_ref() because it isn't used. Reindented a couple of functions. ./src/H5.c ./src/H5G.c ./src/H5Ipublic.h Changed H5I_MAXID to H5I_NGROUPS to better relect the fact that it's the total number of valid ID groups. ./src/H5Shyper.c Changed hyperslab offset arrays to signed quantities to get rid of warnings on DEC cluster. ./src/H5Flow.c ./src/H5Fprivate.h Changed the objno argument of H5F_addr_pack() to be unsigned to get rid of warnings on DEC cluster.
* [svn-r1078] Changes since 19990215Robb Matzke1999-02-181-5/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c Fixed more dependency problems in H5_term_library(). There was a bug in the previous version that could cause the wrong EOF marker to be written to the boot block under certain circumstances. Hopefully this fixes it although I don't ready access to a test case (Mark Miller will test it). ./src/H5F.c ./src/H5Fprivate.h Added an H5F_close_all() that is similar to H5F_term_interface() but which doesn't close the interface. Files that don't have open object headers are closed, others are delayed until all object headers close. All files are flushed. ./src/H5ACprivate.h ./src/H5Bprivate.h ./src/H5Dprivate.h ./src/H5Eprivate.h ./src/H5Fprivate.h ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5HGprivate.h ./src/H5HLprivate.h ./src/H5Iprivate.h ./src/H5MFprivate.h ./src/H5MMprivate.h ./src/H5Oprivate.h ./src/H5Pprivate.h ./src/H5Ppublic.h ./src/H5RAprivate.h ./src/H5Sprivate.h ./src/H5Spublic.h ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5Vprivate.h ./src/H5Zprivate.h ./src/H5private.h ./src/H5public.h Reindented after __DLL__ was added.
* [svn-r1065] Changes since 19990121Robb Matzke1999-02-151-1/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./acconfig.h ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5public.h ./src/H5Omtime.c Check for <stddef.h> Checks for `__tm_gmtoff' in `struct tm' because old versions of GNU libc are different than recent versions. This fixes the failing mtime test. ./bin/config.guess ./config/freebsd2.2.7 [REMOVED] ./config/freebsd [ADDED] Changed the name so it works with all versions of FreeBSD. ./src/H5.c Moved H5F after H5T and H5G in H5_term_library() to satisfy dependencies. ./src/H5G.c Fixed a bug that caused H5Gcreate() to fail if the group name had trailing slashes. ./src/H5Gpublic.h Changed `group_name' to `name' in a prototype. ./src/Makefile.in Dynamic library on Linux, but needs for work to be generally useful. ./src/H5HG.c ./src/H5HGprivate.h Fixed alignment problems when using old GCC compilers (like the one shipped with RedHad Linux). ./tools/h5ls.c Fixed a bug where the contents of the root group could be listed twice if there was a link back to the root group. Similarly for groups that are mentioned on the command line. Fixed a bug where unknown types were printed with a random type class number. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tprivate.h Fixed O(log N) conversion bugs.
* [svn-r1010] Changes since 19981217Robb Matzke1999-01-071-14/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c ./src/H5private.h Renamed `library_initialize_g' to `H5_libinit_g' to make it conform to our naming scheme. ./src/H5I.c Fixed a bug in H5I_dec_ref() that caused the return value to always be zero instead of the new reference count. ./src/H5.c ./src/H5Odtype.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h Added support for enumeration data types. ./src/H5RA.c Renamed H5T_insert() to H5T_struct_insert() and added H5T_enum_insert(). ./src/H5RA.c ./src/H5Shyper.c Added casts to size_t for the third argument of memcpy() to shut up a warning message from insure++. ./src/H5T.c Changed "can't" to "unable to" in some error messages to be more consistent. ./src/H5detect.c If fork() or waitpid() are unavailable then we assume no alignment constraints. Hopefully this is the case only on NT and Intel CPU's don't have alignment constraints. ./src/H5public.h Include <limits.h> because the H5T_NATIVE_CHAR macro needs the definition for CHAR_MIN.
* [svn-r971] Changes since 19981214Robb Matzke1998-12-171-2/+32
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added warning that enabling debugging code can adversely affect performance even when the debugging isn't turned on at run-time. Performance testing shows that under certain circumstances (like data type conversions of compound types) the H5_timer functions, although only a few lines each, contribute a fairly large percent to the execution time. ./src/H5T.c ./src/H5Tpkg.h ./src/H5Tpublic.h Improved the H5Tunregister() function to make unregistering more flexible. It takes the same arguments as H5Tregister() but also accepts wild cards. All conversion functions that match the H5Tunregister() search criteria are removed from the global type conversion table. The H5Tregister_hard() and H5Tregister_soft() were combined into a single function called H5Tregister() which is the counterpart to H5Tunregister(). A new `persistence' argument was added to differentiate between the two types of conversion functions. The application is allowed to register a hard conversion function for the no-op conversion path although the library isn't obligated to call it (it usually does). This is mostly for completeness, but the application might use it to help determine if the raw data pipeline was able to use the optimized path for the case when no type conversion is necessary. The library doesn't allow this path to be unregistered although the application can redefine it as often as it likes. Fixed the type conversion tables in preparation for MT-safety and to fix previosly-known design bugs wrt. unregistering conversion functions or changing the C function associated with a conversion path. The MT-safety stuff is documented in a separate white paper. Increased the conversion function debugging name from 9 characters to 31 characters so the output can be more descriptive. Moved conversion path statistics from the H5T_cdata_t member into the conversion path itself. This makes H5T_cdata_t contain only application-visible data structures. ./src/H5A.c ./src/H5D.c ./src/H5Ofill.c ./src/H5P.c ./src/H5T.c Improved the way type conversion functions are called so the caller doesn't have to check for data type debugging and increment type conversion timers and statistics. Changed check for no-op conversion since it is now application-definable and there may even be more than one definition at a time in a multi-threaded application (one thread might be using the no-op conversion path when some other thread changes its definition -- the first thread still sees the original defintion until it's done with the operation). ./doc/html/Datatypes.html Updated the user guide to reflect the changes to data type conversion registration functions. ./bin/trace ./src/H5.c Added tracing support for the new H5T_pers_t data type. ./test/dtypes.c Added printf to display alignment value if non-aligned data types are being tested. ./test/h5test.c Modified the H5Tunregister() calls to use the new arguments. All 94 of those calls can be replaced by a single call to the new H5Tunregister() function. ./src/H5.c Added HAVE_GETTIMEOFDAY around an auto variable and initialized the elapsed time to zero when gettimeofday() is not available. ./src/H5F.c ./src/H5Fprivate.h ./src/H5P.c Added an H5*_init() functions which do the same thing as H5*_init_interface() but can be called from other packages and don't do anything if the interface is already initialized. This fixes a couple memory leaks in applications that repeatedly close and open the library with H5close(). ./src/H5Tconv.c Optimized some data alignment code in the hardware conversion functions. Hardware conversions accumulate statistics about source and destination data alignment and print that information when the conversion function is unregistered (usually when the application exits) if data type debugging is compiled into the library and enabled at run-time. The conversion caching was cleaned up for the compound data type conversion function. It now caches conversion paths in a manner that will be MT-safe and is much simpler than the old method. Also cleaned up some array index maps. ./src/H5detect.c Fixd mispelling of alingemnt. ./src/H5private.h Changed `TRUE' to `1' in assignment to interface_initialize_g in FUNC_ENTER macro definition. ./tools/testh5dump.sh Completely rewritten to make it shorter, better documented, and conforming to most of the other test outputs. The comparison of the actual output with the expected output is insensitive to differences in white space. The test now passes for the first time on Linux where the output width wasn't as expected but the output was otherwise correct. ./tools/testfiles/tall-1.ddl ./tools/testfiles/tall-2.ddl ./tools/testfiles/tall-3.ddl ./tools/testfiles/tattr-1.ddl ./tools/testfiles/tattr-2.ddl ./tools/testfiles/tattr-3.ddl ./tools/testfiles/tattr-4.ddl ./tools/testfiles/tcomp-1.ddl ./tools/testfiles/tcomp-2.ddl ./tools/testfiles/tcomp-3.ddl ./tools/testfiles/tcomp-4.ddl ./tools/testfiles/tdset-1.ddl ./tools/testfiles/tdset-2.ddl ./tools/testfiles/tdset-3.ddl ./tools/testfiles/tdset-4.ddl ./tools/testfiles/tgroup-1.ddl ./tools/testfiles/tgroup-2.ddl ./tools/testfiles/tgroup-3.ddl ./tools/testfiles/tlink-1.ddl ./tools/testfiles/tlink-2.ddl ./tools/testfiles/tlink-3.ddl ./tools/testfiles/tlink-4.ddl ./tools/testfiles/tlink-5.ddl ./tools/testfiles/tslink-1.ddl ./tools/testfiles/tslink-2.ddl Changed `../h5dump' to just `h5dump'. ./config/alpha-dec-osf4.0 Added more warning and optimization switches to the native compiler.
* [svn-r952] Changes since 19981125Robb Matzke1998-11-251-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./doc/html/Datatypes.html ./src/H5.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tpublic.h ./src/H5detect.c ./test/chunk.c ./test/dtypes.c ./test/h5test.c ./test/mtime.c ./test/tattr.c ./test/th5s.c ./tools/h5dump.c ./tools/h5dumputil.c ./tools/h5import.c ./tools/h5ls.c ./tools/h5toh4.c ./tools/h5tools.c Renamed the old H5T_NATIVE_CHAR type to H5T_NATIVE_SCHAR to denote that it is always signed. Added a new H5T_NATIVE_CHAR type which has the same range, representation, and behavior as either H5T_NATIVE_SCHAR or H5T_NATIVE_UCHAR depending on the compiler and its command-line switches for the application source file which references H5T_NATIVE_CHAR. If source files are compiled with different switches then each source file will resolve H5T_NATIVE_CHAR appropriately so it matches the C type `char' in that source file. NOTE: THERE ARE OTHER DOCUMENTATION FILES THAT I DIDN'T CHANGE BECAUSE I CAN'T MODIFY THE SOURCE. ./test/extend.c Swapped two lines to prevent diagnostic messages from messing up the formatted output.
* [svn-r946] Changes since 19981121Robb Matzke1998-11-241-0/+41
| | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Tconv.c With my poor eyesight I missed the definitions of SCHAR_MIN and SCHAR_MAX in <limits.h> and used CHAR_MIN and CHAR_MAX incorrectly. I changed all occurrences of the latter to the former and the new hardware integer type conversions now work on Irix. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h ./src/H5.c ./test/h5test.c Added a wrapper for HDsnprintf() that just calls sprintf() if snprintf() isn't available. ./MANIFEST Added Paul's new h5toh4 files.
* [svn-r936] Changes since 19981119Robb Matzke1998-11-211-210/+119
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c ./src/H5A.c ./src/H5AC.c ./src/H5B.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5HG.c ./src/H5HL.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5MF.c ./src/H5MM.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5Sselect.c ./src/H5T.c ./src/H5TB.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5detect.c ./src/H5private.h Most of these changes are because the `interface_initialize_g' variable change from hbool_t to int. It's a one line change. Changed the way the library is closed so we have more control over the order the interfaces are shut down. Instead of registering an atexit() function for every interface in some haphazard order we just register one: H5_term_library() which then calls the H5*_term_interface() functions in a well-defined order. If the library is closed and then reopened repeatedly by calling H5close() and H5open() in a loop we only add one copy of the library termination functions with atexit(). Termination is a two-step process in order to help detect programming errors that would cause an infinite loop caused by the termination of one interface waking up some other previously terminated interface. The first step terminates the interface and *marks it as unusable*. After all interfaces are terminated then we mark them all as usable again. The FUNC_ENTER() macro has been modified to return failure or to dump core (depending on whether NDEBUG is defined) if we try to call an interface while it's shutting down. ./src/H5.c The H5dont_atexit() function returns failure if it's called more than once or if it's called too late. However, the error stack is not automatically printed on failure because the library might not be initialized yet ./test/chunk.c ./test/flush1.c ./test/flush2.c ./test/iopipe.c ./test/overhead.c ./test/ragged.c Changed the extra cast for Win32 so we do floating point division again -- it was just confusion about precedence and associativity of casting and the C coercion rules. Removed extra carriage returns inserted by broken operating system. ./src/H5Ffamily.c Fixed an bug where H5F_fam_write() lowered the EOF marker for one of the family members causing H5F_fam_read() to read zeros. ./test/h5test.h [NEW] ./test/h5test.c [NEW] ./test/Makefile.in ./test/bittests.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c Support library for test files. This isn't done yet but Katie's contractions are ~10 minutes apart so I figured I better back this stuff up just in case I'm not here next week... Eventually all test files will understand HDF5_DRIVER to name the low level file driver and parameters so we can easily test various drivers. They will also understand HDF5_PREFIX to prepend to the beginning of file names which is necessary for testing ROMIO with various drivers. Also, the cleanup function will know how to use the file name prefix and will understand different file driver naming schemes like file families. I'm not sure they'll understand the `gsf:' type prefixes yet. Note, the external test is completely commented out because I'm in the middle of modifying it. It will still compile and run but it doesn't test anything at the moment.
* [svn-r928] Changes since 19981118Robb Matzke1998-11-191-3/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c ./src/H5Smpio.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpublic.h ./src/H5detect.c ./src/H5private.h ./src/H5public.h ./test/big.c The `long long' type isn't quite as prevalent as we had hoped; there is at least one system that defines `__int64' but not `long long'. Therefore, I've temporarily changed all occurrences of `long long' to `long_long' and then #define that in H5private.h based on the existence of `long long' or `__int64'. This gets rid of some #ifdef's in other parts of the code. The semantics of the hdf5 types are: *int8_t Exactly one byte *int16_t At least two bytes. We favor 32-bit integers over 16-bit integers if the 16-bit integer is 4-bytes wide (Cray) *int32_t At least four bytes. *int64_t At least eight bytes long_long The widest integral integer type The H5Smpio.c contains debugging code which is non-portable. ./tools/h5ls.c Changed the order native types are detected so we favor the name `int' over `short' or `long' if two of them are the same. ./config/conclude.in Added a rule to make test programs depend on the hdf5 library. This fixes a minor bug where changing H5detect.c and then running `make test' caused H5Tinit.c to not be recompiled and therefore the test files are not relinked.
* [svn-r925] Changes since 19981116Robb Matzke1998-11-181-9/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL.parallel [NEW] We're beginning to unify some of the parallel installation steps. This file will contain general information for installing the parallel library. It's not complete yet. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Check for xdr_int() in libnsl required on Solaris when linking with hdf4. It's found on the Irix system I tested which complains that `-lnsl' didn't resolve any symbols. Oh well. Fixed the order of searching for libdf and libmfhdf for hdf4 linking. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5Z.c Check for compress() in libz in order to find older versions of the library that will still work for hdf4. Added a separate check for compress2() that hdf5 will use. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Ofill.c ./src/H5Olayout.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5R.c ./src/H5RA.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Snone.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Sselect.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5V.c ./test/bittests.c ./test/gheap.c ./test/hyperslab.c ./test/istore.c ./test/tmeta.c ./test/trefer.c ./test/tselect.c ./tools/h5debug.c ./tools/h5tols.c Added checks for Posix.1g types like `int8_t'. If not defined then H5private.h defines them. Changed all `int8' etc. to `int8_t'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c ./src/H5TB.c ./src/H5Z.c Calling H5*_term_interface() resets interface_initialize_g to FALSE so a subsequent call to H5open() (implied or explicit) reinitializes global variables properly. ./src/H5private.h ./src/H5Oefl.c ./src/H5S.c Changed MAX_SIZET, MAX_SSIZET, MAX_HSIZET, and MAX_HSSIZET to SIZET_MAX, SSIZET_MAX, HSIZET_MAX, and HSSIZE_MAX to they match the Posix.1 constants in <limits.h>. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5detect.c Added 36 more integer hardware conversion functions to the type conversion table for conversions to/from `long long' and `unsigned long long'. The `long long' names will be changed shortly to make them portable to Win32. Changed H5T_init() to H5T_native_open() and added an H5T_native_close() to open and close the predefined native data types. Increased the initial size of the type conversion table from 64 to 128 entries. Reordered the 90 new integer conversion functions so the names that are printed favor `int' over `short' or `long' when two of them are the same. ./test/dtypes.c Added hardware and software integer conversion tests for the 56 functions I added recently but not the additional 36 checked in this time. That will come next. Call H5close() after each test so type conversion statistics are easier to follow. Try this: $ HDF5_DEBUG=t ./dtypes Added more debugging output for when things go wrong. ./src/H5private.h Removed trailing carriage-returns inserted by broken operating system ;-)
* [svn-r888] i added a #ifdef HAVE_GETTIMEOFDAY around the gettimeofday ↵Patrick Lu1998-11-101-1/+2
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* [svn-r886] Fixed H5dont_atexit in development branch also.Quincey Koziol1998-11-091-0/+6
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* [svn-r859] Changes since 19981030Robb Matzke1998-11-021-39/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Added new Pablo files HDF5record_RT.h and ProcIDs.h ./acconfig.h ./configure [REGENERATED] ./configure.in ./src/H5.c ./src/H5Vprivate.h ./src/H5config.h.in [REGENERATED] ./src/H5private.h ./src/H5public.h ./test/big.c Added more configuration stuff for the Win32 environment. Removed all the #ifdef WIN32 from the source and replaced them with OS-independent stuff. Specifics follow: Check for non-Posix.1 `st_blocks' field in `struct stat' which is used by the big file test to decide if the file system supports holes. If the st_blocks field isn't present then we just skip the test. Configure checks for <io.h> <sys/resource.h> <sys/time.h> and <winsock.h> and defines HAVE_IO_H, HAVE_SYS_RESOURCE_H, HAVE_SYS_TIME_H and HAVE_WINSOCK_H when they're found. Configure checks whether both <sys/time.h> and <time.h> can be included and defines SYS_TIME_WITH_TIME if so. Otherwise include only <sys/time.h> or <time.h> even if both exist. Configure checks sizeof(__int64) and defines SIZEOF___INT64 to the result or to zero if __int64 isn't defined. The source uses `long long' in preference to `__int64'. Removed null WIN32 definition for `inline' since such a definition already exists in H5config.h Protected gettimeofday() calls in debugging code with HAVE_GETTIMEOFDAY instead of WIN32. ./src/H5F.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fstdio.h ./src/H5P.c ./src/H5Tconv.c ./src/H5private.h Removed #include of system files from library source files and consolodated them into H5private.h where they're protected by various configuration macros (most of them were duplicated there already anyway). ./test/big.c ./test/chunk.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c ./test/fillval.c ./test/flush1.c ./test/flush2.c ./test/iopipe.c ./test/links.c ./test/mount.c ./test/mtime.c ./test/overhead.c ./test/ragged.c ./test/shtype.c ./test/unlink.c Protected system #include's with #ifdef's from H5config.h. Undefined NDEBUG since some of the tests rely on assert() to check return values. Removed WIN32 definitions for __unused__ since this can be controlled by the definition of HAVE_ATTRIBUTE in H5config.h ./test/testhdf5.h Removed the CLEAN_CMD definition because we no longer use it. Albert's cleanup() functions replaced it. ./test/fillval.c Initialized auto hid_t variables to fix warnings in error recovery code when data flow analysis is turned on in compilers. ./test/h5tools.c Initialized an auto variable to fix a compiler warning. ./test/chunk.c ./test/ragged.c The WIN32 had some unsigned variables changed to signed because the compiler generates warnings when coercing unsigned to double(?). I changed them back to unsigned because they really are unsigned quantities. If this the change was just to shut up extraneous warnings then perhaps a compiler flag can do the same; otherwise if the compiler generates bad code then we should supply a patch file instead messing up source code with bug work-arounds. ./src/H5detect.c Protected system #include's with #ifdef's from H5config.h thereby removing a WIN32. If getpwuid() doesn't exist (HAVE_GETPWUID) then we assume that `struct passwd' doesn't exist either (we don't really need it in that case). The H5T_NATIVE_LLONG and H5T_NATIVE_ULLONG are defined in terms of `long long' or else `__int64' or else `long' depending on what's available. ./src/H5Flow.c ./src/H5Ofill.c Added __unused__ to some function arguments that aren't used when assertions are turned off. ./src/H5V.c Changed an auto variable name in some hand-inlined code to get rid of a warning about the variable shadowing a previous auto.
* [svn-r802] Misc. white space adjustments here and there, mostly in comments.Robb Matzke1998-10-271-6/+3
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* [svn-r797] Changed comments from returning "SUCCEED/FAIL" to ↵Quincey Koziol1998-10-261-19/+16
| | | | | | "non-negative/negative" and also fixed a few more explicit checks against FAIL.
* [svn-r789] Changes since 19981023Robb Matzke1998-10-261-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./test/Makefile.in ./test/flush1.c [NEW] ./test/flush2.c [NEW] Test to see if calling H5Fflush() results in a consistent file. ./src/H5.c ./src/H5A.c ./src/H5D.c ./src/H5Fistore.c ./src/H5I.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Sselect.c ./src/H5TB.c Changed comparisons against SUCCEED and FAIL to >=0 and <0 in about 15 places. ./src/H5.c ./src/H5V.c ./src/H5detect.c ./src/H5private.h ./src/H5public.h ./test/big.c ./test/chunk.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/external.c ./test/fillval.c ./test/iopipe.c ./test/links.c ./test/mount.c ./test/mtime.c ./test/ragged.c ./test/shtype.c ./test/unlink.c Removed ^M from the end of lines inserted on broken OS's ;-) ./src/H5private.h Changed c++ comments to c comments. ./src/H5R.c Added tracing macros.
* [svn-r782] Win NT port- tested on Unix and NTPatrick Lu1998-10-231-2/+23
| | | | | | | changes - all changes surrounded by a #if defined(WIN32) defined __undef__ to be equal to nothing, changed long long to __int64 removed body of H5TimerBegin, defined F_OK,R_OK,W_OK, some other changes involving header files.
* [svn-r776] Fixed references, object references should be working now.Quincey Koziol1998-10-221-1/+1
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* [svn-r766] Checkpointing the reference code.Quincey Koziol1998-10-191-26/+7
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* [svn-r764] Changes since 19981014Robb Matzke1998-10-161-0/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/trace ./src/H5.c ./src/H5F.c ./src/H5Fprivate.h ./src/H5Fpublic.h Added a `scope' argument to H5Fflush() which should be either H5F_SCOPE_LOCAL or H5F_SCOPE_GLOBAL and determines which files are flushed (just the specified file or the entire virtual file). ./src/H5F.c Added reference counts to the H5F_t struct so we get the correct behavior between H5Funmount() and H5Fclose(). ./src/H5O.c Fixed a memory leak that happens during error handling. ./test/cmpd_dset.c ./test/unlink.c Fixed a memory leak. ./test/mount.c Enabled the H5Fclose() test.
* [svn-r761] Changes since 19981013Robb Matzke1998-10-141-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c Fixed a signed vs. unsigned comparison. ./src/H5D.c Setting a fill value of all zeros will cause the fill value to be written to the dataset instead of relying on the low-level file driver initializing unwritten areas with zero. ./src/H5D.c ./src/H5F.c ./src/H5Fprivate.h ./src/H5G.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5O.c ./src/H5T.c More file mounting stuff. ./src/H5I.c Fixed a bug where trying to close an invalid object id caused a core dump. For instance, H5Gclose(-1). ./MANIFEST ./test/Makefile.in ./test/mount.c [NEW] Mounting tests. ./src/H5R.c Fixed a couple (herr_t)NULL casts.
* [svn-r757] Added code for object references.Quincey Koziol1998-10-131-0/+73
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* [svn-r745] Changes since 19981002Robb Matzke1998-10-081-1/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./doc/html/H5.format.html ./src/H5HG.c Fixed a bug in the global heap that caused H5HG_read() to write past the end of the buffer in certain cases. ./test/big.c The test is skipped if hdf5 was configured with `--disable-hsizet'. ./src/H5Ofill.c Data type conversions are implemented for the fill value. ./src/H5.c Tracing prints one of H5P_FILE_CREATE, H5P_FILE_ACCESS, H5P_DATASET_CREATE, H5P_DATASET_XFER, or H5P_MOUNT instead of the more cryptic H5I_TEMPLATE_* constants. ./src/H5D.c Removed prototype for H5D_find_name(). ./src/H5I.c The GROUP_MASK and ID_MASK are both calculated from GROUP_BITS instead of being set by hand. We don't use the sign bit of hid_t; all valid hid_t values are positive so we can say things like `if ((file=H5Fopen(...))<0)'. Changed `(int)pow(2.0,x)' to `1<<x' so we don't have to worry about rounding. Fixed H5I_get_type() so it doesn't always fail an assertion. ./src/H5E.c ./src/H5Epublic.h Added minor error H5E_MOUNT ./src/H5F.c ./src/H5Fprivate.h Added H5Fmount() and H5Funmount(). Mounting and unmounting works as documented but some of the other things aren't implemented yet, the biggest being current working groups always acting on the root of the mount tree, and H5Fclose() closing the entire tree. The rest of the stuff will be added shortly... ./src/H5P.c ./src/H5Ppublic.h Added the H5P_MOUNT property list but haven't implemented any particular properties for it yet. ./src/H5Gstab.c Hard links across files return an error instead of failing an assertion.
* [svn-r743] Added H5I_type_t type to H5_trace and added H5Iget_type function ↵Quincey Koziol1998-10-071-0/+60
| | | | | | call. Also checked in H5R skeleton files.
* [svn-r737] Changed H5I groups to have a H5I_ prefix before them, to better ↵Quincey Koziol1998-10-051-18/+18
| | | | | | align with the library.
* [svn-r717] Added code to support unioning hyperslabs with the H5S_SELECT_OR ↵Quincey Koziol1998-09-231-1/+4
| | | | | | operation to H5Sselect_hyperslab.
* [svn-r673] Changes since 19980908Robb Matzke1998-09-081-75/+75
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
* [svn-r641] Changed function names for beta release.Quincey Koziol1998-09-011-6/+6
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* [svn-r620] Changes since 19980825Robb Matzke1998-08-271-3/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5R.c [NEW] ./src/H5Rprivate.h [NEW] ./src/H5Rpublic.h [NEW] ./src/Makefile.in ./src/hdf5.h ./test/ragged.c [NEW] Preliminary support for 2d ragged arrays for Mark Miller and Jim Reus. Not fully implemented yet. The test is not actually part of `make test' because we still have some memory problems. ./src/H5E.c ./src/H5Epublic.h Added H5E_RAGGED as a major error number. ./bin/release Checks the MANIFEST file against `svf ls' on systems that have it. ./bin/trace Fixed a bug that caused arguments of type `void *x[]' to not be handled. ./src/H5.c Removed unused variables and changed a couple types to fix compiler warnings. Added tracing support for ragged array object ID's and arrays of pointers. ./src/H5D.c H5Dcreate() will complain if either of the property lists are invalid (instead of using the default). ./src/H5D.c ./src/H5Dprivate.h Split H5Dget_space() into an API and internal function so it can be called from the new ragged array layer. ./src/H5Fistore.c Fixed warnings about unsigned vs. signed comparisons. ./src/H5Flow.c Fixed a warning about a variable being shadowed in the MPI-IO stuff. ./src/H5Iprivate.h ./src/H5Ipublic.h Added the H5_RAGGED atom group. ./src/H5Shyper.c Fixed some freeing-free-memory errors that resulted when certain arrays were freed but the pointers were left in the data structures. I simply set the pointers to null after they were freed. ./src/H5Sprivate.h ./src/H5Sselect.c Split the H5Sselect_hyperslab() function into an API and a private function so it could be called from the ragged array layer. Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to get rid or compiler warnings. ./src/H5Tconv.c Removed a misleading comment. ./test/bittests.c Fixed a warning about a printf(). ./test/cmpd_dset.c Fixed warnings about unused variables because of test #11 being commented out. ./bin/trace Shortened the right margin for the output to allow room for the `);' at the end of the TRACE() macros.
* [svn-r609] Debugging.htmlRobb Matzke1998-08-201-3/+8
| | | | | | | | | | | | | | | | | | | | | Fixed errors H5.c Fixed core dump with setvbuf() for debugging. H5Fistore.c Fixed bug with sparse datasets. H5Omtime.c Found a typo in "Posix Programmer's Guide". The `%z' in the strftime() should be `%Z' instead. H5T.c H5Tpublic.h Improved api tracing for H5Tinsert_array(). h5tools.c Doesn't dump core for empty datasets.
* [svn-r606] Debugging can be enabled/disabled at runtime though code is stillRobb Matzke1998-08-191-18/+119
| | | | | conditionally included at compile time. Tracing and debugging share the same environment variable. All is documented in Debugging.html.
* [svn-r603] Changes since 19980818Robb Matzke1998-08-181-1/+1
| | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c Fixed an argument promotion bug in HDfprintf() ./src/H5Fistore.c Fixed a array bounds read error. ./src/H5HG.c Fixed uninitialized (but unused) data appearing in the hdf5 file, a potential security problem. ./src/H5T.c ./src/H5Tpublic.h Added new data types for hdf5 types: H5T_NATIVE_HSIZE, H5T_NATIVE_HSSIZE, H5T_NATIVE_HERR, and H5T_NATIVE_HBOOL. I did not add H5T_NATIVE_HID since I couldn't think of a reason that it would be stored in a file anyway.
* [svn-r584] Changes since 19980806Robb Matzke1998-08-101-7/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./doc/html/Datatypes.html ./doc/html/H5.format.html ./src/H5.c ./src/H5Odtype.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tpublic.h ./test/dtypes.c Changed the values of the H5T_str_t type in order to make a distinction between C's null terminated strings and strings which are not null terminated. The string character set and padding method are saved to the hdf5 file instead of using defaults. Added conversion function from one fixed-length string type to another. ./test/chunk.c Fixed to work with new filter API
* [svn-r579] Changes since 19980806Robb Matzke1998-08-061-5/+27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/solaris2.5 Hopefully set up now so it honors the CC and CFLAGS variables and understands solaris cc flags. ./test/big.c Checks to see if creating lots of large sparse files exceeds the user disk quota and skips the test. It also checks that we can actually open ~64 files at once. ./doc/html/Files.html ./src/H5A.c ./src/H5Aprivate.h ./src/H5F.c ./src/H5Fpublic.h Added the H5Fflush() function which takes any object as an argument as long as the object is in some way associated with a file. This required an H5A_entof() ./src/H5.c ./src/H5Flow.c The `%a' format of HDfprintf() now allows a field width and justification flag etc, like the other formats. The old H5F_addr_print() was recoded to call HDfprintf() instead of vice versa.
* [svn-r569] Changes since 19980731Robb Matzke1998-08-051-18/+77
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release Added ./Makefile to the distribution again -- it got lost in the changes last week although it isn't all that important a file since it gets clobbered by configure anyway. ./bin/trace ./doc/html/Filters.html ./doc/html/H5.format.html ./doc/html/H5.user.html ./src/H5.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ocomp.c ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c ./src/H5Zprivate.h ./src/H5Zpublic.h ./src/hdf5.h ./test/dsets.c ./tools/h5ls.c Added the data filter pipeline, a generalization of the compression stuff which allows things like checksums, encryption, compression, performance monitoring, etc. See ./doc/html/Filters.html for details -- it replaces the Compression.html doc. ./src/H5T.c Cleaned up debugging output. ./config/linux Added checks for egcs and pgcc and changed optimization flags for the compilers. ./src/H5G.c ./tools/h5dump.c Fixed compiler warnings in these files and others. ./configure.in ./src/H5private.h ./test/mtime.c Added a check for difftime() and defined HDdifftime() to do something else on systems that don't have difftime().
* [svn-r529] Changes since 19980722Robb Matzke1998-07-221-1/+74
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c Handle hid_t of type H5_TEMPBUF, arguments usually called tbuf_id. Added array tracing where the array rank is stored in a simple data space. Just use the name of the data space argument when declaring the array argument: herr_t H5Sselect_hyperslab (hid_t space_id, H5S_seloper_t op, const hssize_t start[/*space_id*/], const hsize_t _stride[/*space_id*/], const hsize_t count[/*space_id*/], const hsize_t _block[/*space_id*/]) and when the program runs you'll see array values printed: H5Sselect_hyperslab(space=218103813, op=H5S_SELECT_SET, start=0xbfffef4c {0}, _stride=NULL, count=0xbfffef44 {64}, _block=NULL) = SUCCEED; Added more symbolic data types to the tracing output. ./src/H5A.c ./src/H5Apublic.h ./src/H5D.c ./src/H5Dpublic.h ./src/H5F.c ./src/H5Fpublic.h ./src/H5G.c ./src/H5Gpublic.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5S.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Spublic.h ./src/H5Sselect.c ./src/H5Ssimp.c ./src/H5TB.c ./src/H5V.c Changed some API argument names to be more consistent with other API functions and to produce better tracing output. Reformatted some long lines. Indented printf statements. ./tools/h5ls.c Fixed warnings about unsigned vs. signed comparisons.
* [svn-r526] Changes since 19980721Robb Matzke1998-07-221-56/+304
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5ls.c If the dataset is of type H5T_NATIVE_CHAR then we print the value as a string. This is temporary -- I plan to add better control of this later but needed something now for debugging. ./src/H5Fistore.c Squashed a bug in the chunk caching code that caused the wrong chunk to be returned. ./bin/trace ./src/H5.c Added support for printing values of array arguments when the size of the array is supplied by some previous argument. You must declare the argument as an array in order for the automatic tracing stuff to work. For instance, the third argument of H5Pset_chunk() is an array whose size is determined by the second argument `ndims'. Here's how you should declare it: herr_t H5Pset_chunk(hid_t plist_id, intn rank, hsize_t dims[/*rank*/]) The comment inside the `[]' is the name of some previous integer argument (int, unsigned, size_t, ssize_t, hsize_t, hssize_t). The trace output will look something like: H5Pset_chunk(plist=1234567, rank=2, dims=0x112233 {11, 22}) Changed tracing so that data types are printed out symbolically when possible. Changed tracing so data type initializations are not printed. This used to be confusing because lots of H5Tcopy() and H5Tregister...() calls showed up before the applications first explicit API call. ./src/H5Ipublic.h Changed the file atom group from zero to one so printing of atoms during tracing is more consistent -- they're all big numbers now. ./src/H5A.c ./src/H5E.c ./src/H5F.c ./src/H5G.c ./src/H5Sselect.c ./src/H5T.c ./src/H5TB.c ./src/H5Z.c Accidently modified these when working on the tracing, but nothing should have changed. ./src/H5P.c Changed the definition of H5Pset_chunk() for tracing. ./src/H5S.c ./src/H5Spublic.h Changed the definitions of H5Sset_extent_simple() and H5Screate_simple() for tracing. Changed the FUNC_ENTER() name for H5Screate_simple() so tracing shows the correct name.
* [svn-r522] Changes since 19980720Robb Matzke1998-07-201-52/+52
| | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Gpublic.h ./src/H5Gprivate.h ./src/H5G.c ./test/dsets.c ./doc/html/Groups.html Added the H5Gset_comment() and H5Gget_comment() functions described in an earlier e-mail. ./src/H5.c Fixed a bug in the tracing code that caused certain data space enum types to not be printed. Nested case statements can get confusing to the eyes! ./tools/h5ls.c Prints the first 50 bytes or so of object comments.
* [svn-r517] Changes since 19980720Robb Matzke1998-07-201-13/+10
| | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release The archive names have only three parts to a version number. Instead of `hdf5-1.2.3d.tar.gz' they will be named like `hdf5-1.2.3.tar.gz'. ./src/H5public.h ./src/H5.c Dropped the patch level from the version number. The version number is now a major number, a minor number, and a release number. ./doc/html/Version.html Updated to get rid of patch numbers. ./tools/h5repart.c Added a `-V' flag like for `h5ls' that prints the version number.
* [svn-r469] Changes since 19980707Robb Matzke1998-07-081-0/+53
| | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/trace ./src/H5.c Added tracing support for H5S_seloper_t and H5S_class_t. ./src/H5Sselect.c ./src/H5S.c Added tracing statements that weren't inserted previously because of formatting problems. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h ./test/cmpd_dset.c Added H5Tinsert_array() for inserting an array member into a compound data type. Added support to the struct conversion function for member arrays. The index permutation is not supported yet in the conversion (source and destination must have the same permutations).
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