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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-78/+113
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| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-19/+19
| | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-14/+11
| | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-42/+39
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * [svn-r28916] Description:Quincey Koziol2016-01-151-51/+75
| | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28894] Description:Quincey Koziol2016-01-141-19/+38
| | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-2/+0
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-141-2/+0
| | | | | | | | | | | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* | [svn-r27972] merge from trunk.Mohamad Chaarawi2015-10-061-0/+2
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| * [svn-r27938] Fix private/public H5A_get_type and H5A_get_spaceJerome Soumagne2015-10-021-2/+22
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* | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-51/+69
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| * [svn-r27768] Description:Quincey Koziol2015-09-141-51/+69
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27141] merge from trunk.Mohamad Chaarawi2015-06-031-5/+5
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| * [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-5/+5
| | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | [svn-r27090] merge from trunk.Mohamad Chaarawi2015-05-151-6/+6
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| * [svn-r27089] move private functions from H5A.c to H5Aint.cMohamad Chaarawi2015-05-151-266/+0
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| * [svn-r27068] Description:Quincey Koziol2015-05-151-13/+279
| | | | | | | | | | | | | | | | | | Clean up the H5A interface code, to better align with v3 metadata cache changes. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* | [svn-r27050] merge from trunk.Mohamad Chaarawi2015-05-111-1/+1
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| * [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-4/+4
| | | | | | | | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
| * [svn-r25766] Description:Quincey Koziol2014-11-031-2/+2
| | | | | | | | | | | | | | | | | | | | Revert r25273, 25283 & 25439 (the hyperslab improvement changes). They are buggy and it's taking me a long time to correct the problem. I'll check in a revised form of the changes when I've got them straightened out. Tested on: Mac OSX 10.10.0 (amazon) w/gcc 4.9.x, C++, FORTRAN Linux 2.6.x (jam) w/parallel
* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-256/+151
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25555] - rework the public H5VL wrappers to not use H5VL_t* and use a ↵Mohamad Chaarawi2014-08-261-46/+50
| | | | | | | | | | | | | | plugin hid_t instead - rework the private VL layer to use the class structure directly - some bug fixes
* | [svn-r25537] VOL framework changes.Mohamad Chaarawi2014-08-191-109/+64
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* | [svn-r25521] major rework of the internal setup of VOL plugins to make it moreMohamad Chaarawi2014-08-081-1/+0
| | | | | | | | | | | | | | symmetrical to VFDs and allow new functionality to be implemented later. + some Bug fixes
* | [svn-r25502] merge from trunk.Mohamad Chaarawi2014-07-311-5/+11
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| * [svn-r25496] Description:Quincey Koziol2014-07-301-5/+11
| | | | | | | | | | | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* | [svn-r25482] - update is_accessible implementation to use fapl and pass it ↵Mohamad Chaarawi2014-07-241-16/+16
| | | | | | | | | | | | | | | | | | | | down to H5Fint.c - move is_HDF5 inside deprecated macros in H5Fpublic.h - move H5ES_status_t outside of H5VLpublic.h to H5ESpublic.h - rename public properties in H5VLpublic.h to H5VL_PROP_* to add more scoping - no need to include private if pkg is included in H5VLnative.c - rename plist_id to lapl_id in loc_params structs
* | [svn-r25476] - fix error output in several places.Mohamad Chaarawi2014-07-231-3/+3
| | | | | | | | | | - uncomment tests to check error output in Makefiles. - fix bug in native implementation of H5Aiterate.
* | [svn-r25471] merge from trunk and resolve conflicts.Mohamad Chaarawi2014-07-231-0/+1
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| * [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-1035/+39
| | | | | | | | tested with h5committest.
| * [svn-r25273] Description:Quincey Koziol2014-06-131-2/+2
| | | | | | | | | | | | | | | | | | | | | | Bring in Chao/Neil/my changes to optimize hyperslab selection operations further, along with 3 new public API routines: H5Scombine_hyperslab(), H5Sselect_select() and H5Scombine_select(), along with many minor cleanups to the code and fixing a few compiler warnings. Tested on: Mac OSX/64 10.9.3 w/gcc 4.9.x and parallel w/OpenMPI (h5commttest forthcoming)
* | [svn-r25456] fixing a few things and more realignment with trunk.Mohamad Chaarawi2014-07-211-25/+27
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* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-2/+6
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| * [svn-r25084] Description:Quincey Koziol2014-04-231-2/+2
| | | | | | | | | | | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
| * [svn-r24998] Description:Quincey Koziol2014-04-091-0/+3
| | | | | | | | | | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* | [svn-r24311] change event queue to event stack (just variable names)Mohamad Chaarawi2013-10-171-40/+40
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* | [svn-r24301] merge from trunk.Mohamad Chaarawi2013-10-161-1/+0
|\ \ | |/ | | | | resolve conflicts, etc...
| * [svn-r24255] Description:Quincey Koziol2013-10-041-1/+0
| | | | | | | | | | | | | | | | Switch H5I internal data structure from using hash table to skip lists. Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN FreeBSD, Linux, etc. forthcoming
* | [svn-r24076] Allow H5VLobject_register to create an hid_t for files and ↵Mohamad Chaarawi2013-08-261-5/+0
| | | | | | | | attributes.
* | [svn-r23887] add the VOL error code to H5err.txtMohamad Chaarawi2013-07-111-26/+26
| | | | | | | | rerun reconfigure. All the other changes must be due to different autotools versions used before.
* | [svn-r23803] Add VOL callback for H5AiterateMohamad Chaarawi2013-06-211-69/+32
| | | | | | | | | | Add VOL callback for H5T get routines Update Native implementation
* | [svn-r23473] Update the VOL plugin callbacks with better async I/O support:Mohamad Chaarawi2013-03-281-38/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - change hid_t req in callbacks to void **req - change all callbacks to accept dxpl_ids (except dataset write and read which already do) - update all the private and public VL routines to accept a dxpl_id and event queue id - Add an async class for the VOL plugin with cancel, test, and wait request operations - add the external VOL log plugin test to the examples directory NOTE that async operations are still not provided by the HDF5 API, so all event queue IDs and requests passed to all plugins are NULL for now. Tested on jam.
* | [svn-r22993] some minor changesMohamad Chaarawi2012-10-311-0/+1
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* | [svn-r22584] merge from trunk and resolve type ID registrationMohamad Chaarawi2012-07-161-6/+13
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| * [svn-r22582] Description:Quincey Koziol2012-07-161-5/+12
| | | | | | | | | | | | | | | | | | Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* | [svn-r22565] change OH id registration to original way, and re-register the ↵Mohamad Chaarawi2012-07-121-0/+13
| | | | | | | | | | | | | | | | ID with the VOL info on the upper level (API and iteration/visit routines) - this fixes the bug exposed in H5Oopen with external log plugin update the private VL registration routine to take an app_ref update the datatype ID creation for the VOL to take an app_ref
* | [svn-r22549] Mohamad Chaarawi2012-07-101-13/+0
| | | | | | | | | | | | | | | | | | | | move ref count management on the VOL struct inside the VLint code - H5Freopen still needs to be handled create the public interface for VOL callbacks: - unresolved issue with var_args update and create new API fapl calls to support stacking drivers: - need to add fapl copy callback fix a memory leak with registration of external plugins
* | [svn-r22542] update H5I_register_type usage to take a free_aux function callbackMohamad Chaarawi2012-07-101-1/+1
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* | [svn-r22523] - rework how IDs for VOL objects are createdMohamad Chaarawi2012-07-061-36/+12
| | | | | | | | | | - change how the vlose routine is registered with VOL IDs - some bug fixes
* | [svn-r22519] - many bug fixesMohamad Chaarawi2012-07-051-1/+2
| | | | | | | | - still some unresolved issues with named datatypes
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