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* [svn-r13304] Description:Quincey Koziol2007-02-141-33/+67
| | | | | | | | Fix new API routines to use same pattern of arguments for specifying an object as the new H5G/L/O API routines. Tested on: Linux/32 2.6 (chicago)
* [svn-r13288] Description:Quincey Koziol2007-02-131-1/+2
| | | | | | | | | | | | | Fix core dump for iterating over attributes and not passing in a "starting point". Update output files missed in previous checkin. This change essentially reverses a previous change of attribute ordering, leaving the output of h5dump & h5ls compatible with 1.6.x Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13287] Description:Quincey Koziol2007-02-131-7/+70
| | | | | | | | | | | | | Add H5Aget_info_by_idx & H5Aget_name_by_idx routines, along with refactoring underlying indices code to handle those sort of queries. Simplify the link callback routines a bit. Minor other cleanups. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13274] Description:Quincey Koziol2007-02-091-8/+8
| | | | | | | | | Relax restriction on the "location ID" for attribute operations to allow file IDs to be used as the location ID. If a file ID is used, the attribute operations will occur on the file's root group. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13272] Description:Quincey Koziol2007-02-081-5/+59
| | | | | | | | Checkpoint attribute creation order coding on "by index" routines. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13248] Description:Quincey Koziol2007-02-061-4/+92
| | | | | | | | | More progress on creation order for attribbutes - they are now basically working for "compact" attribute storage. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13226] Description:Quincey Koziol2007-01-311-7/+7
| | | | | | | | | | Add attributes to the message classes that use the shared message method calling interface, completing the transition. The other mechanism will be removed shortly. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13223] Description:Quincey Koziol2007-01-301-44/+12
| | | | | | | | | | | | Move datatype messages into new shared message method interface Clean up various formatting & compiler warnings Minor optimizations Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13155] Description:Quincey Koziol2007-01-191-1/+1
| | | | | | | | | | | | | | Add "set_crt_index" and "get_crt_index" methods for the object header message class. Unify fractal heap definitions for shared messages and attributes, under "object header" fractal heap definitions. Initial code for adding creation order index to object header messages. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13128] Description:Quincey Koziol2007-01-091-0/+10
| | | | | | | | | | More progress on address bugs in combinations of shared/committed/unshared components of shared/unshared attributes in compact/dense storage. (Yes, there are a lot of combinations. :-) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13122] Description:Quincey Koziol2007-01-081-2/+2
| | | | | | | | | | Add more tests for attributes with shared components. Close memory leak in shared message table loading. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13104] Description:Quincey Koziol2007-01-031-4/+4
| | | | | | | | | Add support for renaming compact & dense/shared & non-shared attributes in all cases. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13100] Description:Quincey Koziol2007-01-031-1/+1
| | | | | | | | Fix bug which could possibly corrupt file data if an attribute was renamed to a longer name. Tested on: FreeBSD/32 6.1 (duty)
* [svn-r13074] Description:Quincey Koziol2006-12-191-52/+85
| | | | | | | | | | | | | | | | | Add support for opening attributes in dense and/or shared storage by index. Move routines for building and operating on tables of attributes into separate source module. Fix bug where reverting from "dense" to "compact" storage would 'unshare' attributes. Minor code cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13073] Description:Quincey Koziol2006-12-181-14/+11
| | | | | | | | Verify H5Aget_num_attrs() works correctly for new object header format. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13068] Ran bin/reconfigure. Some of the scripts have been changed or ↵James Laird2006-12-181-13/+14
| | | | | | | | | haven't been run in a while, so many of the source files were updated with tracing macros, etc. No code changes by me. Tested on kagiso and smirom.
* [svn-r13065] Added support for copying shared messages (including turning ↵James Laird2006-12-151-3/+3
| | | | | | | | | | | | unshared messages to shared messages and vice versa). Extended objcopy test to test all "permutations" of shared/unshared and new/old group format. If this proves to take a long time to test, I'll go back and have it run fewer tests when HDF5_TEST_EXPRESS is enabled. Tested on smirom, kagiso, copper, and Windows.
* [svn-r13047] Description:Quincey Koziol2006-12-121-60/+15
| | | | | | | | | | | | | | Add "attribute exists" internal routine to make verifying that an attribute with the same name doesn't already exist easier. Tweak "trace" script to produce more whitespace in H5TRACE macros, in order to make them easier to read. Minor other whitespace cleanups Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13046] Description:Quincey Koziol2006-12-121-56/+56
| | | | | | | | Minor editing & code cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13045] Description:Quincey Koziol2006-12-121-61/+10
| | | | | | | | | | | | | | Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo> in order to accommodate indices on aspects of attributes as well as links. Add basic support for deleting attributes in dense storage (needs more support/tests for shared attributes in dense storage still). Misc. cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13041] Description:Quincey Koziol2006-12-111-16/+93
| | | | | | | | | | | Migrate "internalish" attribute operations into new source code file. Add test & basic support for opening attributes in dense storage (shared attributes not tested or supported yet). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13037] Description:Quincey Koziol2006-12-081-9/+10
| | | | | | | Move attribute creation code out of H5Omessage.c and into H5Oattr.c Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r13028] Description:Quincey Koziol2006-12-061-156/+57
| | | | | | | | | | | | | | | | | Add first pass of "dense" attribute storage to objects. Lots of parts of this are stubbed out, but all the tests are passing and I'll work on the corner cases soon. Eliminated several unused parameters from object header message callback routines. Other, miscellaneous code cleanups, etc. (and probably some things I've forgotten about... :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13016] Description:Quincey Koziol2006-12-041-13/+13
| | | | | | | | | | | Finish moving object header message routines into their own source code module, along with renaming them to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13015] Description:Quincey Koziol2006-12-041-9/+9
| | | | | | | | | | | Migrate more object header routines to use the H5O_msg_ prefix and put them into the src/H5Omessage.c code module. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13012] Description:Quincey Koziol2006-12-031-3/+3
| | | | | | | | | | | | | | Refactor object header code to separate process of creating an object header message from the process of writing to an existing one. Start renaming operations that deal with object header messages to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r12976] Description:Quincey Koziol2006-11-271-68/+76
| | | | | | | | | | | Add # of attributes to the object info struct and deprecate H5Aget_num_attrs(). Tested on: FreeBSd/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-13/+53
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12846] Description:Quincey Koziol2006-11-021-3/+3
| | | | | | | | | | Further minor tweaking of property list class initialization macros, etc. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled AIX/32 5.x (copper) w/FORTRAN & parallel
* [svn-r12842] Description:Quincey Koziol2006-11-021-17/+1
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12740] Description:Quincey Koziol2006-10-101-9/+7
| | | | | | | | | | | Update datasets and the layout, attributes and fill-value object header messages to use the latest version of the file format flag. Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-3/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12662] Description:Quincey Koziol2006-09-121-3/+3
| | | | | | | | Whitespace/formatting/compiler warning cleanup. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12452] Purpose:James Laird2006-07-051-16/+3
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-2/+2
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12221] Purpose:Quincey Koziol2006-04-101-0/+3
| | | | | | | | | | | | | | | "Hide" file format changes (for now) Description: Add ifdef's (controlled by the --enable-group-revision configure flag) to disable group revision changes to the file format, in order to allow alpha release to go ahead without releasing an unsupported version into the wild. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti)
* [svn-r11899] Purpose:Quincey Koziol2006-01-281-0/+1
| | | | | | | | | | | | | | | | Bug fix & new feature Description: Support variable-length datatypes in compact data storage and chunked data storage, along with attributes. Bug fix on the H5T_vlen_set_loc to allow for changing the file on a variable-length datatype on disk. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Can't h5committest right now, due to missing cache files.
* [svn-r11852] Purpose:Quincey Koziol2006-01-021-17/+17
| | | | | | | | | | | Code cleanup/update Description: Update compiler flags for gcc 4.1.x & start cleaning up some of the C++ compatibility Platforms tested: FreeBSD 4.11 (sleipnir) w/gcc 4.1 and/or g++
* [svn-r11850] Purpose:James Laird2006-01-021-11/+120
| | | | | | | | | | | | | | Feature Description: Added character encoding and attribute creation property lists. Solution: Attributes' character encoding is set via the ACPL. The default is ASCII, with UTF-8 being the other option currently. Platforms tested: heping, mir, sleipnir, copper
* [svn-r11838] Purpose:Quincey Koziol2005-12-261-4/+14
| | | | | | | | | | | | | | | | Bug fix Description: Retrieving an object's name could fail (in various ways) under certain circumstances (mostly having to do with mounted files). Solution: Re-write & simplify "get object name" code to fix error in a better way than adding yet another hack to the previous pile of hacks... :-) Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11712] Purpose:Quincey Koziol2005-11-151-333/+294
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature Description: Check in baseline for compact group revisions, which radically revises the source code for managing groups and object headers. WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! This initiates the "unstable" phase of the 1.7.x branch, leading up to the 1.8.0 release. Please test this code, but do _NOT_ keep files created with it - the format will change again before the release and you will not be able to read your old files!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! WARNING!!!! Solution: There's too many changes to really describe them all, but some of them include: - Stop abusing the H5G_entry_t structure and split it into two separate structures for non-symbol table node use within the library: H5O_loc_t for object locations in a file and H5G_name_t to store the path to an opened object. H5G_entry_t is now only used for storing symbol table entries on disk. - Retire H5G_namei() in favor of a more general mechanism for traversing group paths and issuing callbacks on objects located. This gets us out of the business of hacking H5G_namei() for new features, generally. - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t - Lots more... Platforms tested: h5committested and maybe another dozen configurations.... :-)
* [svn-r11415] Purpose: Internal design change.Raymond Lu2005-09-141-2/+2
| | | | | | | | | | | | | | | | | Description: H5T_register() replaces any existing data conversion path with a new path. Solution: Added a parameter to H5T_register() and H5T_path_find() to signal the library whether the new conversion path is from API function H5Tregister() or from private function like H5T_init_interface(). If it is from H5Tregister(), replace existing path. If it's from H5T_init_interface() and the library is trying to register default hard conversion functions, don't replace existing path because the path is registered by the library. For example, the library registered H5T_conv_int_float() and is trying to register H5T_conv_long_float(). The size of long is equal to int. There's no need to replace the path H5T_conv_int_float(). Platforms tested: h5committest and fuss.
* [svn-r11384] Purpose:Quincey Koziol2005-09-121-1/+1
| | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Merge back changes from "compact group" work that improve the infrastructure of the library and may impact others. In this round of merging, that includes: - Move datatype allocation into single internal routine, instead of duplicated code that was spread out in a dozen or so places. - Clean up guts of object header routines (H5O_*) to allow for some of the fancieroperations that need to be performed on groups, along with some general improvements. - Added a new error code - Some minor cleanups in other code.... Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Mac OS X
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-61/+61
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10736] Purpose:Quincey Koziol2005-05-071-3/+3
| | | | | | | | | | | Code cleanup Description: Clean up some compiler warnings Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r9857] Purpose: MaintenanceElena Pourmal2005-01-221-3/+0
| | | | | | | | | | | | | | Description: Removed PABLO from the source Solution: Platforms tested: arabica with 64-bit, copper with parallel, heping with GNU C and C++ and PGI fortran (but I disabled hl, there is some weird problem only on heping: F9XMODFLAG is not propagated to the Makefile files Misc. update:
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-31/+30
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9559] Purpose:Quincey Koziol2004-11-221-11/+14
| | | | | | | | | | | | | Code optimization Description: Switch a few more malloc/free pairs over to using internal free list code, to avoid abusing system memory allocator as badly. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
* [svn-r9556] Purpose:Quincey Koziol2004-11-221-75/+95
| | | | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Improve ADF/CGNS benchmark by reducing the number of internal attribute copies made during creations, opens and writes. Added new H5O_iterate() routine for iterating through messages of a certain type in the object header (attributes are the only message currently that can have multiple instances in the object header). Cross-pollinated various minor code cleanups to reduce diffs between branches. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require h5committest
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