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* Bring cache logging routines from revise_chunks branch to develop.Quincey Koziol2016-11-041-4/+199
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* Remove static definition for debugging routines. *sigh*Quincey Koziol2016-11-041-2/+0
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* Move cache debugging routines into separate module.Quincey Koziol2016-11-031-179/+0
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* Merge branch 'develop' into evict_on_closeDana Robinson2016-09-141-1/+3
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| * [svn-r30126] Description:Quincey Koziol2016-06-301-1/+3
| | | | | | | | | | | | | | | | Correct build error with non-debug parallel builds Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r30118] Sync with trunk.Dana Robinson2016-06-291-112/+6
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| * [svn-r30113] Description:Quincey Koziol2016-06-281-5/+6
| | | | | | | | | | | | | | | | Clean up warnings (from 2774 -> 1560, with my standard debug build) Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r30112] Description:Quincey Koziol2016-06-281-107/+0
| | | | | | | | | | | | | | | | | | | | Move updated flush dependency code in metadata cache from revise_chunks branch to trunk. Also many of the cleanups from r30111 in the revise_chunks branch. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* | [svn-r30104] Fixes evict-on-close feature by propagating globalDana Robinson2016-06-241-2/+2
|/ | | | | flush flag up the function call stack and not setting it during H5Dclose().
* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+34
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-131-1/+40
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30053] Description:Quincey Koziol2016-06-081-4/+8
| | | | | | | | | Create iterator routine for tagged entries and refactor current routines to use it. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30023] Description:Quincey Koziol2016-06-061-16/+18
| | | | | | | | Make the trace open/close routines static. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30002] Fixed some minor warnings in H5AC.c and H5C.c, cleaned up warningsDana Robinson2016-06-011-1/+1
| | | | | | | | in the cache tests, and made some huge static arrays dynamic in the cache tests. Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial
* [svn-r29969] Description:Quincey Koziol2016-05-291-0/+35
| | | | | | | | | | | Bring r29934 from revise_chunks branch to trunk: (1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit. (2) Modifications to better handle error recovery when conversion by h5format_convert fails. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29850] Description:Quincey Koziol2016-05-011-10/+122
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29842] Description:Quincey Koziol2016-04-301-1/+5
| | | | | | | | | Bring [appropriate portions of] r29811, 29813, 29826, 29830, 29831 from revise_chunks branch to the trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29548] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-241-1/+1
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r29096] fix bug in internal dxpls generated exposed by production and ↵Mohamad Chaarawi2016-02-121-6/+8
| | | | parallel.
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-17/+74
|\ | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29077] Description:Quincey Koziol2016-02-101-4/+1
| | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r29059] merge from trunk.Mohamad Chaarawi2016-02-071-21/+96
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| * [svn-r28959] merge from trunk.Mohamad Chaarawi2016-01-221-94/+38
| |\ | | | | | | | | | renaming metadata dxpl properties.
| * | [svn-r28915] Description:Quincey Koziol2016-01-151-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | Review revisions on the way to the trunk. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r28895] Description:Quincey Koziol2016-01-141-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | Minor code tweaks and cleanups during review. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5comittest not required on this branch)
| * | [svn-r28851] merge from trunk.Mohamad Chaarawi2016-01-111-0/+1
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| * \ \ [svn-r28636] merge from trunk.Mohamad Chaarawi2015-12-141-13/+19
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| * \ \ \ [svn-r27929] merge from trunk.Mohamad Chaarawi2015-10-011-35/+134
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| * \ \ \ \ [svn-r27436] merge from trunk.Mohamad Chaarawi2015-07-271-2302/+52
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| * | | | | | [svn-r27264] some cleanups.Mohamad Chaarawi2015-06-221-3/+3
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| * | | | | | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-4/+72
| | | | | | | | | | | | | | | | | | | | | | | | | | | | branch.
* | | | | | | [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-17/+69
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* | | | | | [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-51/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* | | | | | [svn-r28894] Description:Quincey Koziol2016-01-141-14/+14
| |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* | | | | [svn-r28696] Minor normalization with revise_chunks.Dana Robinson2015-12-171-0/+1
| |_|_|/ |/| | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only
* | | | [svn-r28452] Description:Quincey Koziol2015-11-231-13/+19
| |_|/ |/| | | | | | | | | | | | | | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* | | [svn-r27768] Description:Quincey Koziol2015-09-141-33/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | | [svn-r27710] Description:Quincey Koziol2015-09-091-0/+110
| |/ |/| | | | | | | | | | | | | | | Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk. (This change will support the page buffering feature) Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27298] Description:Quincey Koziol2015-06-291-37/+51
| | | | | | | | | | | | | | | | | | Separate H5AC layer from using package-scoped pieces of the H5C layer, moving from including H5Cpkg.h to H5Cprivate.h. Tested on: MacOSX/64 10.10.3 (amazon) w/serial, parallel & production Linux/32 2.6.x (jam) w/serial & parallel
* | [svn-r27296] Description:Quincey Koziol2015-06-291-1/+1
| | | | | | | | | | | | | | | | | | Correct error with braces around macro (in production builds), also clean up a few warnings. Tested on: MacOSX/64 10.10.3 (amazon) w/serial, parallel & production Linux/32 2.6 (jam) w/serial & parallel
* | [svn-r27293] Description:Quincey Koziol2015-06-271-2256/+0
|/ | | | | | | | Split parallel metadata cache code into separate source code modules. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (too minor for h5committest)
* [svn-r27237] Description:Quincey Koziol2015-06-181-55/+43
| | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* [svn-r27199] Description:Quincey Koziol2015-06-131-1899/+1134
| | | | | | | | | Large code cleanups and optimizations, in preparation for the upcoming v3 metadata cache merge. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27144] Description:Quincey Koziol2015-06-031-22/+20
| | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-4/+4
| | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* [svn-r26841] Description:Quincey Koziol2015-04-181-1/+1
| | | | | | | | Minor formatting cleanups and remove unused field from callback struct. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r26771] - remove unused internal dxpl properties and property lists ↵Mohamad Chaarawi2015-04-081-101/+30
| | | | | | | | from the AC layer - fix warnings in H5AC.c tested with h5committest
* [svn-r25321] Reworked and enhanced extreme sanity check in H5C.c, fixing an John Mainzer2014-06-181-0/+131
| | | | | | | | | | | | | | | | | | | | | | | | | uninitialized variable bug in passing. Added the H5C_get_entry_ptr_from_addr() and H5C_verify_entry_type() in H5C.c, along with their pass through functions in H5AC.c. Note that H5C_get_entry_ptr_from_addr() is quite slimey, and should be avoided if possible. Updated fractal heap to use flush ordering to force children in the hdr / iblock / dblock tree to be flushed prior to parents. This is part of a port of the fractal heap to the V3 cache, although I gather that it will also be useful for SWMR. Added sanity checking code to the fractal heap to verify that direct blocks are flushed before their parent indirect blocks, child indirect block are flushed prior to their parent indirect blocks, and that the root iblock or dblock is flushed prior to the header Tested on: Jam: Serial and parallel Phoenix (Debian): serial, debug and production amazon (MacOS): serial
* [svn-r25084] Description:Quincey Koziol2014-04-231-39/+31
| | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r24598] allocate and use the H5AC_aux_t struct even if num_procs == 1. ↵Mohamad Chaarawi2013-12-301-48/+42
| | | | | | | | | This was a bug exposed by running a single process with a program that generates lots of dirty metadata that needs to be flushed. h5committest done!
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