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* Merge hdf5_1_14 changes 07-29 to 08-04 (#3355)Larry Knox2023-08-041-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Fix loading plugin fails with missing directory GH issue #3248 (#3323) * Switch parallel compression to use vector I/O (#3245) (#3327) Updates parallel compression feature to use vector I/O instead of creating and passing down MPI derived types to VFD * Fix incorrect error check in H5Ofill.c for undefined fill values (#3312) (#3328) * Fix H5Otoken_to_str call in h5dump and other minor cleanup (#3314) (#3329) * Fix h5repack for variable-length datatyped datasets (#3331) (#3333) * Merge Made HGOTO_ERROR a do-while loop changes from develop (#3334) * Merge Fixes the last of the -Wextra-semi-stmt warnings #3326 (#3338) * Fix assertion failure in H5D__mpio_collective_filtered_vec_io (#3340) (#3350) * Merges from develop Aug 2-4 (#3354) * Fix CVE-2018-11202 (#3330) A malformed file could result in chunk index memory leaks. Under most conditions (i.e., when the --enable-using-memchecker option is NOT used), this would result in a small memory leak and and infinite loop and abort when shutting down the library. The infinite loop would be due to the "free list" package not being able to clear its resources so the library couldn't shut down. When the "using a memory checker" option is used, the free lists are disabled so there is just a memory leak with no abort on library shutdown. The chunk index resources are now correctly cleaned up when reading misparsed files and valgrind confirms no memory leaks. * Fix CVE-2018-13867 (#3336) * Windows runtime items go into the bin folder (#3320) * Commit changes to generated file generated by autogen.sh: configure, H5Einit.h, and H5Tconv.c. * Committing clang-format changes
* Remove "Programmer" lines (#3294)Dana Robinson2023-07-271-18/+0
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* Brings over most of the HD prefix removal (#3293)Dana Robinson2023-07-271-16/+16
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* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-2/+2
| | | | | * Update format source to clang 13 * More format changes
* Fixed Spelling Errors (#1166)Scot Breitenfeld2021-12-071-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string * spelling corrections via codespell, added new spell check github actions * Committing clang-format changes * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * misc * misc * misc * misc * misc * Committing clang-format changes * misc * work around for https://github.com/codespell-project/codespell/issues/2137 * misc * added missing file * misc * misc. * misc * switch to using Codespell with GitHub Actions * misc. * misc. * fixed more sp errors * Fix new typos found by codespell. * fixed proceed with precede * fixed variable in fortran test * fixed minnum * updated spelling list Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* Clang-format of source filesAllen Byrne2020-09-301-40/+23
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* Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-6/+0
| | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* Trim trailing whitespaceQuincey Koziol2020-04-201-5/+5
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* Squash merge of MDC logging changes.Dana Robinson2018-12-211-115/+0
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Minor cleanups and bring over "prefetched dirty" fixes for entries loaded fromQuincey Koziol2017-03-121-0/+2
| | | | a cache image.
* Minor warning fixes.Dana Robinson2017-02-091-1/+1
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* Cache image feature and testingQuincey Koziol2017-01-291-0/+201
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* Bring file shutdown code from cache image branchQuincey Koziol2017-01-051-0/+40
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* Removed NDEBUG guards from H5AC test functions.Dana Robinson2016-12-111-2/+0
| | | | | H5AC_dump_cache() is now used in test/cache_tagging.c and the underlying H5C functions are not protected by NDEBUG guards.
* Move cache debugging routines into separate module.Quincey Koziol2016-11-031-0/+253
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