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* Changes found during merge to 1.12 (#414)Allen Byrne2021-03-041-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup
* Fixed many -Wreserved-id-macro warnings by fixing header guard spelling (#361)Sean McBride2021-02-231-2/+2
| | | | | | | | | | | | | | | | * Fixed many -Wreserved-id-macro warnings by fixing header guard spelling Removed leading underscore(s) from header guard spelling. Used 2 regexes: ` _H5(.*)_H` ` __H5(.*)_H` Applied case-insensitively to only .h files. * Modified scripts that generate header files to not use underscore prefix Interestingly, there was already no leading underscore in the trailing comment at the end of the file * Fixed remaining -Wreserved-id-macro warning not caught by regex
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* Clang-format of source filesAllen Byrne2020-09-301-164/+147
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* Fix comment formatting due to tabs conversionAllen Byrne2020-09-241-10/+10
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* File changes to affect formattingAllen Byrne2020-09-041-62/+64
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* Merge branch 'develop' into mdc_sl_optmainzer2020-08-151-1/+1
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| * Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-1/+1
| | | | | | | | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* | When flushing, the metadata cache attempts to flush entries in increasingmainzer2020-08-051-0/+2
|/ | | | | | | | | | | | | | | | address order. To facilitate this, the metadata cache needs a list of of dirty entries in increasing address order. This is implemented via a skip list of all dirty entries in the cache. To date this skip list has been maintained at all times. However, profiling indicates that we can avoid significant overhead by constructing the skip list of dirty entries just before a flush, taking it down afterwareds, and not maintaining it during normal operation. This commit implements this optimization for both serial and parallel. Tested serial and parallel, debug and production on charis and jelly.
* Trim trailing whitespaceQuincey Koziol2020-04-201-6/+6
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* Checkin for new shutting down free-space manager.Vailin Choi2019-06-201-0/+1
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* Squash merge of MDC logging changes.Dana Robinson2018-12-211-6/+0
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* Normalization with vol_integration (test code and H5Xtest.c)Dana Robinson2018-09-201-1/+1
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-42/+20
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* Style cleanups and misc. bugfixes discovered during full SWMR development.Quincey Koziol2017-09-231-2/+1
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Add H5_DLL to H5AC_get_mdc_image_info() prototypeQuincey Koziol2017-03-241-1/+1
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* Add prototype for H5AC_get_mdc_image_infoQuincey Koziol2017-03-221-0/+2
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* Final merge of page buffering branch to developQuincey Koziol2017-03-141-0/+3
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* Minor cleanups and bring over "prefetched dirty" fixes for entries loaded fromQuincey Koziol2017-03-121-1/+1
| | | | a cache image.
* Misc. style cleanups from the page_buffering branch.Quincey Koziol2017-02-181-1/+1
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* Cache image feature and testingQuincey Koziol2017-01-291-2/+32
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* Bring change to use array of metadata cache entry classes for H5C_createQuincey Koziol2017-01-281-1/+31
| | | | instead of array of class names from cache image branch.
* Switch list lengths to unsigned integers (to align better w/cache image merge)Quincey Koziol2017-01-281-2/+1
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* Bring changes to metadata cache "get entry status" call and newQuincey Koziol2017-01-061-0/+6
| | | | | "child serialized / unserialized" messages and support from the cache image branch.
* Add "image up to date" flag / parameter to metadata cache entry status calls.Quincey Koziol2017-01-061-0/+1
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* Bring file shutdown code from cache image branchQuincey Koziol2017-01-051-0/+5
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* Merge code from cache image branch to split FSM ring into two types: raw dataQuincey Koziol2017-01-041-1/+2
| | | | and metadata. Also, some more ring reset safeties and minor code cleanups.
* Align with name change of "user" ring in incoming cache image changes.Quincey Koziol2016-12-301-1/+1
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* More normalizations against incoming cache image branch.Quincey Koziol2016-12-291-2/+3
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* Normalize against incoming cache image feature.Quincey Koziol2016-12-281-39/+39
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* Removed NDEBUG guards from H5AC test functions.Dana Robinson2016-12-111-2/+0
| | | | | H5AC_dump_cache() is now used in test/cache_tagging.c and the underlying H5C functions are not protected by NDEBUG guards.
* Updated the H5FS cache code to grab the correct tag and modifiedDana Robinson2016-12-081-0/+1
| | | | | | | | the freespace test to use dxpls that have been tagged with the H5AC__FREESPACE_TAG global tag instead of H5AC_ind_read_dxpl_id. The library code now expects the owner of the free space manager to tag it so the owner-less free space managers in the freespace tag had to be tagged with *something* to avoid cache errors.
* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-1/+33
| | | | and the tool and API wrappers will be coming in over the weekend.
* Bring over support for retrying metadata cache entry loads, along with all theQuincey Koziol2016-11-201-1/+3
| | | | supporting metadata cache callback changes, etc.
* Remove 'clear' callback from metadata cache client interface, using theQuincey Koziol2016-11-181-1/+0
| | | | new 'entry cleaned' notify action innstead.
* Remove explicit support within the metadata cache for tracked compressedQuincey Koziol2016-11-171-2/+0
| | | | entries, they are now completely handled in the clients.
* Bring over new 'notify' metadata cache client callback actions for when anQuincey Koziol2016-11-121-0/+4
| | | | | entry is cleaned / dirtied or its [flush dependency] child entry is cleaned / dirtied.
* Align w/minor cleanups in revise_chunks branch.Quincey Koziol2016-11-121-1/+0
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* Switch to new, more scalable, metadata cache entry tagging.Quincey Koziol2016-11-071-5/+11
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* Code style and warning cleanups, from revise_chunks branch.Quincey Koziol2016-11-061-30/+29
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* Add missing prototypes for cache debugging routines.Quincey Koziol2016-11-041-1/+2
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* [svn-r30118] Sync with trunk.Dana Robinson2016-06-291-34/+30
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| * [svn-r30112] Description:Quincey Koziol2016-06-281-5/+1
| | | | | | | | | | | | | | | | | | | | Move updated flush dependency code in metadata cache from revise_chunks branch to trunk. Also many of the cleanups from r30111 in the revise_chunks branch. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r30102] Cleaned up incorrect comments in H5AC_type_t enum.Dana Robinson2016-06-231-29/+29
| | | | | | | | | | | | Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1 Autotools serial (comment and whitespace changes only)
* | [svn-r30104] Fixes evict-on-close feature by propagating globalDana Robinson2016-06-241-1/+1
|/ | | | | flush flag up the function call stack and not setting it during H5Dclose().
* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+1
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-131-0/+7
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30023] Description:Quincey Koziol2016-06-061-31/+29
| | | | | | | | Make the trace open/close routines static. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29969] Description:Quincey Koziol2016-05-291-0/+1
| | | | | | | | | | | Bring r29934 from revise_chunks branch to trunk: (1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit. (2) Modifications to better handle error recovery when conversion by h5format_convert fails. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
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