| Commit message (Collapse) | Author | Age | Files | Lines |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
* Update supported platforms
* Merge PR#3 changes from develop
* # WARNING: head commit changed in the meantime
Merge gcc 10 diagnostics option from develop
Merge CMake changes from develop
Merge warnings from develop
Merge #318 OSX changes from develop
Merge tools changes from develop
Merge test macros from develop
* Format updates
* Fix missing semicolon and format fix
* Format update
* Correct actions, remove java option
* Update autotools build files
* Add testfiles
* Fix configure issue with make flags
* Init fapls to default
* Update generated files and fix h5repack id closure
* update format
* Merges from develop
#358 patches from vtk
#361 fix header guard spelling
* Merges from develop
#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
whitespace cleanup
tools sync
* format alignment
* initialize vars
* revert H5private change
* Merge #380 from develop
|
|
|
|
|
|
|
| |
* Update URL for COPYING file in copyright headers.
* Make fortran copyright headers uniformly spaced.
* Update url for Copyright file in c++/src/footer.html.
|
|
|
|
|
| |
Comments, whitespace
Simple init and if block brackets.
Minimal code changes limited to return value and spelling
|
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
to develop
* commit '0a2bb11b248df6841daabca3970df5d8504adfc7':
address problems from comments
fix and address comments
change according to previous comments
add missing piece
remove unnecessary check macro
fix intel compile warnings
Revert "fix warnings from Intel compiler"
Revert "fix warnings and some text alignment"
Revert "let hdf5 pick up the right compiler in Intel environment"
Revert "fix issues from previous PR comments"
Revert "using a different MACRO"
using a different MACRO
fix issues from previous PR comments
let hdf5 pick up the right compiler in Intel environment
fix warnings and some text alignment
fix warnings from Intel compiler
|
|
|
|
| |
removed and replace it with new url for COPYING file.
|
|
|
|
|
|
|
| |
fix for Jira issue 9670 - HDF5 segfaults on corrupted file.
Change compare callback in Btree2 class to correctly account for errors.
tested on bb-8.
|
|
|
|
|
|
|
|
|
| |
- Add a new attribute function characterstic for format:
* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
|
|
|
|
|
|
|
|
|
| |
Renamed H5_ASSIGN_OVERFLOW() to H5_CHECKED_ASSIGN() and re-ordered
the arguments to be in a more logical order.
Fixes HDFFV-9322
Tested on: h5committest
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r26191 from trunk to 1.8 branch:
Track the min & max keys for a v2 B-tree, so it can more efficiently
determine if a key is present in the B-tree.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
(h5committested on trunk)
|
|
|
|
|
|
|
| |
rename H5V to H5VM since H5V is needed in the fastforward project for
view objects. The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r22608 from trunk to 1.8 branch:
Switch propert list/class iteration from internal to external form of
iteration, cleaning up and simplifying the code a bit.
Bring other general improvements from plist_encode_decode branch back to
trunk.
Clean up many warnings.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/gcc 4.7, debug and C++ & FORTRAN
(too minor to require h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r21919-21924 from trunk to 1.8 branch: cleanup FUNC_ENTER macros,
etc.
Also removed Subversion mergeinfo tags from a few directories and files.
These are artifacts from non-root merges using pre-1.6 Subversion clients. (This
should fix the problem of unchanged directories looking "changed" during
checkins.)
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug & production
(daily tested on trunk)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r19153 from trunk to 1.8 branch:
Bring changes on Coverity branch back to trunk:
r19040:
Fixed coverity #440 - NULL check after dereference. We moved the NULL check up
into the IF block and changed it to assertion.
r19041:
Maintenance: Addressed Coverity issues 441 and 449 by initializing proper
variables
r19042:
In function H5O_chunk_protect (H5Ochunk.c):
- Initialize H5O_chunk_proxy_t pointers chk_proxy and ret_value.
- Free chk_proxy on error.
r19043:
Addressed coverity issues 442 - 448 by initializing pointers to NULL.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug & production
(Too minor to require h5committest)
|
|
|
|
|
|
|
|
|
| |
Rename H5AC_set() to H5AC_insert_entry()
Get rid of H5C_set_skip_flags() & related flags
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug
(too simple to require h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r18702 from trunk to 1.8 branch:
Bring r18672 from metadata journaling "merging" branch to trunk:
Mostly changes to move to only using one 'user data' parameter for
calls to H5AC_protect(), along with some minor reformatting code cleanups.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.3 (amazon) in debug mode
Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
|
|
|
|
|
|
|
|
|
|
| |
Bring r18621 from trunk to 1.8 branch:
Clean up compiler warnings.
Tested on:
Mac OS X/32 10.6.3 (amazon) w/debug
(too minor to require h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r18494 from trunk to 1.8 branch:
Bring r18491 from metadata journaling "merging" branch to trunk:
Extract data structure 'destroy' routines from metadata cache client
'destroy' callbacks.
Tested on:
FreeBSD/32 6.3 (duty) w/debug
(h5committested on trunk)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r17893 from trunk to 1.8 branch:
Remove old shim H5B2 routines from refactoring, rename new routines to
old routine names and switch all users of the H5B2 interface back to the old
routine names now that the switch to using the more current open -> <operation>
-> pattern is used for all the H5B2 code. This is the final change before
adding a context to the H5B2 client encode/decode callbacks.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committested on trunk)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r17838 from trunk to 1.8 branch:
Further refactoring of v2 B-tree code, moving toward being able to pass
a context information to a client's encode/decode callbacks.
Also, clean up of other minor compiler warnings and code formatting
issues.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.1 (amazon) in debug mode
Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r17740 from trunk to 1.8 branch:
Refactor v2 B-tree code to take creation parameters to H5B2_create() as
a struct (instead of individual arguments), call the client's class "cls"
instead of "type" internally, and add client class name to client class struct.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.1 (amazon) in debug mode
Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring revisions 17649, 17657 and 17658 from trunk to 1.8 branch:
17649: Refactor v2 B-trees to pin the B-tree header in the cache instead
of using separate reference counted data structure.
17657: Refactor the v2 B-tree code to use an open & close call
internally, in preparation for making those part of the library
private APIs for dealing with v2 B-trees.
17658: Rename 'H5B2_t' -> 'H5B2_hdr_t' and 'bt2' -> 'hdr' in preparation
for make v2 B-tree open/close routines library private (instead
of static).
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.1 (amazon) in debug mode
Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
|
|
|
|
|
|
|
|
|
| |
Clean up various compiler warnings from IRIX64 build
Tested on:
Mac OS X/32 (amazon) debug & production
(yes, I know it's not an IRIX64 system :-)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Merge these trunk revisions which occurred during the 1.8.3 release code
freeze back to the 1.8 branch:
From Quincey: 16845 16847 16849 16851 16858 16869 16897
From Ray: 16859 16880
From Allen: 16863
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
|
|
|
|
|
|
|
|
|
|
| |
Bring r16364 back from trunk:
Clean up a few compiler warnings
Tested on:
Mac OS X/32 (amazon)
(too minor to require h5committest)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bug Fix
Description:
Resolved issues with broken sanity checks that were failing when the 'b2'
debugging package was enabled (v2 b-tree debugging):
- Fixed outdated assertions that would not compile. They now compile
and function correctly.
- Removed too far outdated assertions that would require too much
unnecessary refactoring of code in order to satisfy their
initial purpose.
- Re-enabled b2 debugging package when "--enable-debug=all" is
specified on the configure line.
Tested:
jam, smirom, linew
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Bring r15800 back from trunk:
- File free space branch changes through r15794
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
|
|
|
|
|
|
|
|
|
| |
Bring r15609 back from trunk:
Omnibus compiler warning cleanup & some formatting happiness.
Tested on:
Mac OS X/32 10.5.4 (amazon)
Too minor to require h5committest
|
|
|
|
|
|
|
|
|
|
| |
Fix bug which would incorrectly encode the member offsets for compound
datatypes whose size was between 256 & 511 bytes, when the "use the latest
format" feature was enabled.
Tested on:
Mac OS X/32 10.5.2 (amazon) w/debug
FreeBSD/32 6.2 (duty) w/production
|
|
|
|
|
|
|
|
|
|
|
| |
Various code cleanups and refactor recent changes for h5stat to fit
into the existing library data structures better.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
New feature.
Description:
Added routines to report on the amount of storage for:
1) 1.6 btree and heap storage info for groups
2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table
3) btree storage for chunked datasets
4) 1.8 superblock extension size.
Platform tested:
h5committested.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Change back to clearing memory buffers by default, but give users option
to disable this, for performance reasons (--disable-clear-file-buffers).
Also, add configure option (--enable-using-memchecker) to conveniently
control making the library "play nice" with memory checking tools like valgrind
and purify.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
|
|
|
|
|
|
|
| |
Reduce compiler warnings w/gcc 4.2
Tested on:
FreeBSD/32 6.2 (duty) w/gcc 4.2
|
|
|
|
|
|
|
|
|
| |
copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
|
|
|
|
|
|
|
|
|
|
|
| |
Further simplifications and cleanups to object header message code.
Also, some changes to the "iterate" routines, in order to not override
the return value from the iterator callback routine.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|
|
|
|
|
|
|
|
|
| |
Clear up some confusion for the internal H5V_log2_gen() routine, so it
always takes a 64-bit value as a parameter.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Finish implementation of H5Literate() [still needs real tests]
Clean up datatype macro warnings a bit more.
Unify iterator callback macros and put up in public header file, with the
iterator directions.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
|
|
|
|
|
|
|
|
|
|
| |
Finish adding "delete by index" feature to v2 B-trees.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
|
|
|
|
|
|
|
|
| |
Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out)
for further work.
Tested on:
Linux/32 2.6 (chicago)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
File format is not stable, don't keep files produced!
Description:
First stage of checkins modifying the format of groups to support creation
order. Implement "dense" storage for links in groups.
Try to clarify some of the symbols for the H5L API.
Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest
file format options (including "dense" link storage in groups)
Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation
order tracking in groups (although no index on creation order yet).
Remove --enable-group-revision configure flag, as file format issues are
now handled in a backwardly/forwardly compatible way.
Clean up lots of compiler warnings and other minor formatting issues.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-v1.6 compa
Mac OSX/32 10.4.8 (amazon)
AIX 5.3 (copper) w/parallel & FORTRAN
|
|
|
|
|
|
|
|
| |
Whitespace/formatting/compiler warning cleanup.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|
|
|
|
|
|
|
|
|
| |
Clean up whitespace/formatting.
Tested on:
Mac OS/PPC 10.4 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|
|
|
|
|
|
|
|
|
| |
Remove some references to "twig" and "branch" internal B-tree nodes, which
were eliminated in the previous checkin.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Improve density of the B-tree further. For greater depths of B-trees,
the gains are over 100%...
Also, don't split internal nodes with 3->4 splits, use a 1->2 split
instead, so that the density of the nodes around a split is maximized.
Tested:
Mac OS X/PPC 10.4 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|
|
|
|
|
|
|
|
|
|
|
|
| |
Split edge nodes in the tree with a 1->2 node split, instead of a 2->3 node
split, which creates a more dense tree when a pattern of record insertions
occurs (because it leaves behind full nodes instead of 2/3 full nodes).
Tested:
FreeBSD/32 4.11 (sleipnir)
Linux/64 2.4 (mir)
Linux/32 2.4 (heping)
Solaris/64 2.9 (shanti)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Refactor the file storage of "twig" nodes in the B-tree to allow them to
store more records, increasing the average density of the B-tree 30-40%.
Increase # of records in "insert lots" regression test to still create
B-tree of depth 4
Update h5debug to interpret difference of 'branch' and 'twig' internal
nodes in B-tree correctly.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
Solaris/64 2.9 (shanti)
|
|
|
|
|
|
|
|
|
|
|
| |
Fix off-by-one error in computing the size of metadata prefixes for v2
B-tree internal & leaf nodes.
General code cleanup and reformating.
Tested On:
Mac OS X.4/PPC (amazon)
Too minor to require h5committest
|
|
|
|
|
|
|
|
| |
Add checksum to v2 B-tree metadata.
Tested On:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
|