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* [svn-r18704] Description:Quincey Koziol2010-05-051-126/+214
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r18702 from trunk to 1.8 branch: Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18622] Description:Quincey Koziol2010-04-231-55/+55
| | | | | | | | | | Bring r18621 from trunk to 1.8 branch: Clean up compiler warnings. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r18495] Description:Quincey Koziol2010-04-021-2/+90
| | | | | | | | | | | | | Bring r18494 from trunk to 1.8 branch: Bring r18491 from metadata journaling "merging" branch to trunk: Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: FreeBSD/32 6.3 (duty) w/debug (h5committested on trunk)
* [svn-r17894] Description:Quincey Koziol2009-11-151-30/+30
| | | | | | | | | | | | | | Bring r17893 from trunk to 1.8 branch: Remove old shim H5B2 routines from refactoring, rename new routines to old routine names and switch all users of the H5B2 interface back to the old routine names now that the switch to using the more current open -> <operation> -> pattern is used for all the H5B2 code. This is the final change before adding a context to the H5B2 client encode/decode callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17839] Description:Quincey Koziol2009-11-051-214/+175
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r17838 from trunk to 1.8 branch: Further refactoring of v2 B-tree code, moving toward being able to pass a context information to a client's encode/decode callbacks. Also, clean up of other minor compiler warnings and code formatting issues. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17741] Description:Quincey Koziol2009-10-241-60/+60
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17740 from trunk to 1.8 branch: Refactor v2 B-tree code to take creation parameters to H5B2_create() as a struct (instead of individual arguments), call the client's class "cls" instead of "type" internally, and add client class name to client class struct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17738] Description:Quincey Koziol2009-10-231-721/+458
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring revisions 17649, 17657 and 17658 from trunk to 1.8 branch: 17649: Refactor v2 B-trees to pin the B-tree header in the cache instead of using separate reference counted data structure. 17657: Refactor the v2 B-tree code to use an open & close call internally, in preparation for making those part of the library private APIs for dealing with v2 B-trees. 17658: Rename 'H5B2_t' -> 'H5B2_hdr_t' and 'bt2' -> 'hdr' in preparation for make v2 B-tree open/close routines library private (instead of static). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17266] Description:Quincey Koziol2009-07-301-4/+0
| | | | | | | | | Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r16920] Description:Quincey Koziol2009-05-051-5/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge these trunk revisions which occurred during the 1.8.3 release code freeze back to the 1.8 branch: From Quincey: 16845 16847 16849 16851 16858 16869 16897 From Ray: 16859 16880 From Allen: 16863 Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16365] Description:Quincey Koziol2009-01-271-3/+3
| | | | | | | | | | Bring r16364 back from trunk: Clean up a few compiler warnings Tested on: Mac OS X/32 (amazon) (too minor to require h5committest)
* [svn-r16195] Purpose:Mike McGreevy2008-12-151-26/+4
| | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Resolved issues with broken sanity checks that were failing when the 'b2' debugging package was enabled (v2 b-tree debugging): - Fixed outdated assertions that would not compile. They now compile and function correctly. - Removed too far outdated assertions that would require too much unnecessary refactoring of code in order to satisfy their initial purpose. - Re-enabled b2 debugging package when "--enable-debug=all" is specified on the configure line. Tested: jam, smirom, linew
* [svn-r15801] Description:Quincey Koziol2008-10-071-33/+8
| | | | | | | | | | | | | | | | | | | | | | | Bring r15800 back from trunk: - File free space branch changes through r15794 Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15629] Description:Quincey Koziol2008-09-161-7/+7
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15610] Description:Quincey Koziol2008-09-101-1/+1
| | | | | | | | | Bring r15609 back from trunk: Omnibus compiler warning cleanup & some formatting happiness. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r14737] Description:Quincey Koziol2008-03-131-3/+3
| | | | | | | | | | Fix bug which would incorrectly encode the member offsets for compound datatypes whose size was between 256 & 511 bytes, when the "use the latest format" feature was enabled. Tested on: Mac OS X/32 10.5.2 (amazon) w/debug FreeBSD/32 6.2 (duty) w/production
* [svn-r13984] Description:Quincey Koziol2007-07-171-59/+61
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-131-0/+59
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13814] Description:Quincey Koziol2007-05-291-9/+9
| | | | | | | | | | | | | | Change back to clearing memory buffers by default, but give users option to disable this, for performance reasons (--disable-clear-file-buffers). Also, add configure option (--enable-using-memchecker) to conveniently control making the library "play nice" with memory checking tools like valgrind and purify. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13773] Description:Quincey Koziol2007-05-201-45/+45
| | | | | | | Reduce compiler warnings w/gcc 4.2 Tested on: FreeBSD/32 6.2 (duty) w/gcc 4.2
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13019] Description:Quincey Koziol2006-12-041-5/+5
| | | | | | | | | | | Further simplifications and cleanups to object header message code. Also, some changes to the "iterate" routines, in order to not override the return value from the iterator callback routine. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12987] Description:Quincey Koziol2006-11-271-3/+3
| | | | | | | | | Clear up some confusion for the internal H5V_log2_gen() routine, so it always takes a 64-bit value as a parameter. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12949] Description:Quincey Koziol2006-11-201-1/+1
| | | | | | | | | | | | | | | | Finish implementation of H5Literate() [still needs real tests] Clean up datatype macro warnings a bit more. Unify iterator callback macros and put up in public header file, with the iterator directions. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12915] Description:Quincey Koziol2006-11-151-15/+31
| | | | | | | | | | Finish adding "delete by index" feature to v2 B-trees. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12914] Description:Quincey Koziol2006-11-141-5/+348
| | | | | | | | Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out) for further work. Tested on: Linux/32 2.6 (chicago)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-14/+36
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12662] Description:Quincey Koziol2006-09-121-7/+8
| | | | | | | | Whitespace/formatting/compiler warning cleanup. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12657] Description:Quincey Koziol2006-09-111-26/+26
| | | | | | | | | Clean up whitespace/formatting. Tested on: Mac OS/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12646] Description:Quincey Koziol2006-09-051-12/+2
| | | | | | | | | Remove some references to "twig" and "branch" internal B-tree nodes, which were eliminated in the previous checkin. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12644] Description:Quincey Koziol2006-09-051-479/+153
| | | | | | | | | | | | | Improve density of the B-tree further. For greater depths of B-trees, the gains are over 100%... Also, don't split internal nodes with 3->4 splits, use a 1->2 split instead, so that the density of the nodes around a split is maximized. Tested: Mac OS X/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12638] Description:Quincey Koziol2006-09-041-383/+166
| | | | | | | | | | | | Split edge nodes in the tree with a 1->2 node split, instead of a 2->3 node split, which creates a more dense tree when a pattern of record insertions occurs (because it leaves behind full nodes instead of 2/3 full nodes). Tested: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Solaris/64 2.9 (shanti)
* [svn-r12631] Description:Quincey Koziol2006-08-261-77/+171
| | | | | | | | | | | | | | | | | Refactor the file storage of "twig" nodes in the B-tree to allow them to store more records, increasing the average density of the B-tree 30-40%. Increase # of records in "insert lots" regression test to still create B-tree of depth 4 Update h5debug to interpret difference of 'branch' and 'twig' internal nodes in B-tree correctly. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12619] Description:Quincey Koziol2006-08-231-53/+56
| | | | | | | | | | | Fix off-by-one error in computing the size of metadata prefixes for v2 B-tree internal & leaf nodes. General code cleanup and reformating. Tested On: Mac OS X.4/PPC (amazon) Too minor to require h5committest
* [svn-r12615] Description:Quincey Koziol2006-08-221-5/+4
| | | | | | | | Add checksum to v2 B-tree metadata. Tested On: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12589] Description:Quincey Koziol2006-08-171-2/+2
| | | | | | | | | | | | | | Revert passing the v2 B-tree class to callbacks, it turns out to be unnecessary. Also revert have a "class private" pointer for each v2 B-tree class. Add in support for the different flavors of fractal heap 'huge' objects also. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12561] Description:Quincey Koziol2006-08-101-22/+40
| | | | | | | | | | | | Update code formatting a little and refactor to add a better mechanism for performing callbacks when removing records from the B-tree or deleting entire B-tree. Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS 10.4 (amazon)
* [svn-r12093] Purpose:Quincey Koziol2006-03-151-0/+6
| | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap changes - mostly internal changes to better handle more direct blocks from root indirect block. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r11968] Purpose:Quincey Koziol2006-02-271-0/+3357
Incrementtal checkin Description: Revise & update v2 B-tree code to separate the internal package-specific routines from the library-callable "private" routines. Similar updates for the fractal heap code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon)
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