| Commit message (Collapse) | Author | Age | Files | Lines |
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Bring r16846 from revise_chunks branch back to trunk:
Fix broken (for how long?) H5_ASSIGN_OVERFLOW macro to actually detect
overflows during assignments, along with several errors it [now] detected.
Cleaned up a fix minor warnings and/or pieces of code also.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committest not needed - multi-platform test performed on branch)
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Remove unnecessary 'udata' parameter from H5AC_set() and 'notify' callback
(introduced with checkin that added the 'notify' callback)
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Add 'notify' callback to metadata cache clients, so that they can be
aware when the cache has taken/will take certain actions. Notifications are
urrently limited to when an entry has successfully entered the cache (via an
insertion or a load from the file) and when an entry is about to be evicted
from the cache.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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Clean up a few compiler warnings
Tested on:
Mac OS X/32 (amazon)
(too minor to require h5committest)
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Bug Fix
Description:
Resolved issues with broken sanity checks that were failing when the 'b2'
debugging package was enabled (v2 b-tree debugging):
- Fixed outdated assertions that would not compile. They now compile
and function correctly.
- Removed too far outdated assertions that would require too much
unnecessary refactoring of code in order to satisfy their
initial purpose.
- Re-enabled b2 debugging package when "--enable-debug=all" is
specified on the configure line.
Tested:
jam, smirom, linew
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Bring file free space branch changes through r15795 into trunk, which
includes a fair bit of code cleanup & rearrangement along with a couple of
bug fixes also.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Remove trailing whitespace from C/C++ source files, with the following
script:
foreach f (*.[ch] *.cpp)
sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end
Tested on:
Mac OS X/32 10.5.5 (amazon)
No need for h5committest, just whitespace changes...
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Omnibus compiler warning cleanup & some reformatting also.
Tested on:
Mac OS X/32 10.5.4 (amazon)
Too minor to require h5committest
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Clean up a few more compiler warnings.
Tested on:
FreeBSD/64 6.2 (liberty)
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New fortran wrappers added.
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Bring r14737 back from the 1.8 branch: Fix bug which would
incorrectly encode the member offsets for compound datatypes whose size was
between 256 & 511 bytes, when the "use the latest format" feature was enabled.
Tested on:
Mac OS X/32 10.5.2 (amazon) w/debug
FreeBSD/32 6.2 (duty) w/production
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Various code cleanups and refactor recent changes for h5stat to fit
into the existing library data structures better.
Tested on:
Mac OS X/32 10.4.10 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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New feature.
Description:
Added routines to report on the amount of storage for:
1) 1.6 btree and heap storage info for groups
2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table
3) btree storage for chunked datasets
4) 1.8 superblock extension size.
Platform tested:
h5committested.
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Change back to clearing memory buffers by default, but give users option
to disable this, for performance reasons (--disable-clear-file-buffers).
Also, add configure option (--enable-using-memchecker) to conveniently
control making the library "play nice" with memory checking tools like valgrind
and purify.
Tested on:
Mac OS X/32 10.4.9 (amazon)
FreeBSD/32 6.2 (duty)
Linux/32 2.6 (kagiso)
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Reduce compiler warnings w/gcc 4.2
Tested on:
FreeBSD/32 6.2 (duty) w/gcc 4.2
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copyright notice.
Tested platform:
Kagiso only since it is only a comment block change. If it works in one
machine, it should work in all, I hope. Still need to check the parallel
build on copper.
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Further simplifications and cleanups to object header message code.
Also, some changes to the "iterate" routines, in order to not override
the return value from the iterator callback routine.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clear up some confusion for the internal H5V_log2_gen() routine, so it
always takes a 64-bit value as a parameter.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Finish implementation of H5Literate() [still needs real tests]
Clean up datatype macro warnings a bit more.
Unify iterator callback macros and put up in public header file, with the
iterator directions.
Tested on:
Mac OS X/32 10.4.8 (amazon)
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Finish adding "delete by index" feature to v2 B-trees.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
AIX/32 5.? (copper)
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Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out)
for further work.
Tested on:
Linux/32 2.6 (chicago)
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File format is not stable, don't keep files produced!
Description:
First stage of checkins modifying the format of groups to support creation
order. Implement "dense" storage for links in groups.
Try to clarify some of the symbols for the H5L API.
Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest
file format options (including "dense" link storage in groups)
Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation
order tracking in groups (although no index on creation order yet).
Remove --enable-group-revision configure flag, as file format issues are
now handled in a backwardly/forwardly compatible way.
Clean up lots of compiler warnings and other minor formatting issues.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-v1.6 compa
Mac OSX/32 10.4.8 (amazon)
AIX 5.3 (copper) w/parallel & FORTRAN
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Whitespace/formatting/compiler warning cleanup.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Clean up whitespace/formatting.
Tested on:
Mac OS/PPC 10.4 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Remove some references to "twig" and "branch" internal B-tree nodes, which
were eliminated in the previous checkin.
Tested on:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Improve density of the B-tree further. For greater depths of B-trees,
the gains are over 100%...
Also, don't split internal nodes with 3->4 splits, use a 1->2 split
instead, so that the density of the nodes around a split is maximized.
Tested:
Mac OS X/PPC 10.4 (amazon)
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Split edge nodes in the tree with a 1->2 node split, instead of a 2->3 node
split, which creates a more dense tree when a pattern of record insertions
occurs (because it leaves behind full nodes instead of 2/3 full nodes).
Tested:
FreeBSD/32 4.11 (sleipnir)
Linux/64 2.4 (mir)
Linux/32 2.4 (heping)
Solaris/64 2.9 (shanti)
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Refactor the file storage of "twig" nodes in the B-tree to allow them to
store more records, increasing the average density of the B-tree 30-40%.
Increase # of records in "insert lots" regression test to still create
B-tree of depth 4
Update h5debug to interpret difference of 'branch' and 'twig' internal
nodes in B-tree correctly.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/32 2.4 (heping)
Linux/64 2.4 (mir)
Solaris/64 2.9 (shanti)
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Fix off-by-one error in computing the size of metadata prefixes for v2
B-tree internal & leaf nodes.
General code cleanup and reformating.
Tested On:
Mac OS X.4/PPC (amazon)
Too minor to require h5committest
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Add checksum to v2 B-tree metadata.
Tested On:
Linux/32 2.6 (chicago)
Linux/64 2.6 (chicago2)
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Revert passing the v2 B-tree class to callbacks, it turns out to be
unnecessary. Also revert have a "class private" pointer for each v2 B-tree
class.
Add in support for the different flavors of fractal heap 'huge' objects
also.
Tested on:
FreeBSD/32 4.11 (sleipnir)
Linux/64 2.4 (mir)
Solaris/64 2.9 (shanti)
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Update code formatting a little and refactor to add a better mechanism
for performing callbacks when removing records from the B-tree or deleting
entire B-tree.
Testing:
FreeBSD 4.11 (sleipnir)
Linux/64 2.4 (mir)
Linux/32 2.4 (heping)
Mac OS 10.4 (amazon)
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Code checkpoint
Description:
Checkpoint fractal heap changes - mostly internal changes to better
handle more direct blocks from root indirect block.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Linux 2.4 (chicago)
Mac OS X (amazon)
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Incrementtal checkin
Description:
Revise & update v2 B-tree code to separate the internal package-specific
routines from the library-callable "private" routines.
Similar updates for the fractal heap code.
Platforms tested:
FreeBSD 4.11 (sleipnir)
Mac OSX (amazon)
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