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* [svn-r21261] Description:Quincey Koziol2011-08-181-4/+4
| | | | | | | | Synchronize metadata journaling branch with changes from trunk. Tested on: Mac OS X/32 10.6.8 (amazon) (h5committest not required on this branch)
* [svn-r19112] Description:Quincey Koziol2010-07-201-2/+2
| | | | | | | | Rename H5AC_set() to H5AC_insert_entry() Get rid of H5C_set_skip_flags() & related flags Tested on: Eyeballed only, very simple...
* [svn-r18910] Description:Quincey Koziol2010-05-271-2/+2
| | | | | | | | | | | | | | | Remove 'size' parameter from H5AC2_set()/H5C2_insert_entry(), to align better with trunk. Use the 'image_len' cache client callback to retrieve the size of an inserted entry. Also, add flags to the cache client class structure, to indicate several client behaviors: speculative loads & compressed storage on disk (which were previously dependent on the 'image_len' callback only being used to detect size changes during load (deserialize) operations). Tested on: Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18862] Description:Quincey Koziol2010-05-201-29/+24
| | | | | | | | | | | | | | | Add 'get_load_size' client callback to determine the image size for reading a metadata cache entry from the file. Remove the 'size' parameter from the H5[A]C_protect() calls. General cleanups to align with code on trunk. Tested on: Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18790] Description:Quincey Koziol2010-05-131-25/+25
| | | | | | | | | | Remove the size parameter from H5[A]C_unprotect() and the H5[A]C__SIZE_CHANGED_FLAG, switching all clients & tests over to using H5[A]C_resize_entry appropriately. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & prod Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18671] Description:Quincey Koziol2010-04-291-86/+67
| | | | | | | | | | Mostly minor code cleanups and reformatting to better set up udata parameters when protecting metadata cache entries. Also, some changes to better align with state of code on the trunk. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (h5committest not required on this branch)
* [svn-r18490] Description:Quincey Koziol2010-04-011-2/+130
| | | | | | | | Cleanups & renamings for extracted data structure 'destroy' routines. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug, production & parallel (h5commit not required on this branch)
* [svn-r18452] Description:Quincey Koziol2010-03-251-122/+122
| | | | | | | | | | Finish renaming cache-related files & symbols on metadata journaling branch. Metadata cache-related symbols/files with no suffix now have a '1' suffix and symbols/files with a '2' suffix now have no suffix. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug, prod & parallel (h5committest not required on this branch)
* [svn-r18195] Description:Quincey Koziol2010-01-301-7/+7
| | | | | | | Remove trailing whitespace from source code files. Tested on: None - just eyeballed
* [svn-r18029] Description:Quincey Koziol2009-12-171-13/+13
| | | | | | | | Code cleanups & tweaks to converge branch toward trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & production (h5committest not required on this branch)
* [svn-r15300] Description:Quincey Koziol2008-06-301-14/+24
| | | | | | | | | | | | | | | | | Bring revisions 15210:15289 from the trunk into the metadata journaling branch. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r15285] Purpose: metadata cache client conversionMike McGreevy2008-06-271-135/+221
| | | | | | | | Description: converted the v2 b-tree header, internal node, and leaf node metadata cache clients over to use the new journaling cache callbacks. Tested: kagiso, smirom
* [svn-r15232] Description:Quincey Koziol2008-06-181-3/+3
| | | | | | | | | | | | | | | | | | Bring back revisions 14700:14800 from the trunk Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r13984] Description:Quincey Koziol2007-07-171-59/+61
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-131-0/+59
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13814] Description:Quincey Koziol2007-05-291-9/+9
| | | | | | | | | | | | | | Change back to clearing memory buffers by default, but give users option to disable this, for performance reasons (--disable-clear-file-buffers). Also, add configure option (--enable-using-memchecker) to conveniently control making the library "play nice" with memory checking tools like valgrind and purify. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (kagiso)
* [svn-r13773] Description:Quincey Koziol2007-05-201-45/+45
| | | | | | | Reduce compiler warnings w/gcc 4.2 Tested on: FreeBSD/32 6.2 (duty) w/gcc 4.2
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13019] Description:Quincey Koziol2006-12-041-5/+5
| | | | | | | | | | | Further simplifications and cleanups to object header message code. Also, some changes to the "iterate" routines, in order to not override the return value from the iterator callback routine. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12987] Description:Quincey Koziol2006-11-271-3/+3
| | | | | | | | | Clear up some confusion for the internal H5V_log2_gen() routine, so it always takes a 64-bit value as a parameter. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12949] Description:Quincey Koziol2006-11-201-1/+1
| | | | | | | | | | | | | | | | Finish implementation of H5Literate() [still needs real tests] Clean up datatype macro warnings a bit more. Unify iterator callback macros and put up in public header file, with the iterator directions. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12915] Description:Quincey Koziol2006-11-151-15/+31
| | | | | | | | | | Finish adding "delete by index" feature to v2 B-trees. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12914] Description:Quincey Koziol2006-11-141-5/+348
| | | | | | | | Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out) for further work. Tested on: Linux/32 2.6 (chicago)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-14/+36
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12662] Description:Quincey Koziol2006-09-121-7/+8
| | | | | | | | Whitespace/formatting/compiler warning cleanup. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12657] Description:Quincey Koziol2006-09-111-26/+26
| | | | | | | | | Clean up whitespace/formatting. Tested on: Mac OS/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12646] Description:Quincey Koziol2006-09-051-12/+2
| | | | | | | | | Remove some references to "twig" and "branch" internal B-tree nodes, which were eliminated in the previous checkin. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12644] Description:Quincey Koziol2006-09-051-479/+153
| | | | | | | | | | | | | Improve density of the B-tree further. For greater depths of B-trees, the gains are over 100%... Also, don't split internal nodes with 3->4 splits, use a 1->2 split instead, so that the density of the nodes around a split is maximized. Tested: Mac OS X/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12638] Description:Quincey Koziol2006-09-041-383/+166
| | | | | | | | | | | | Split edge nodes in the tree with a 1->2 node split, instead of a 2->3 node split, which creates a more dense tree when a pattern of record insertions occurs (because it leaves behind full nodes instead of 2/3 full nodes). Tested: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Solaris/64 2.9 (shanti)
* [svn-r12631] Description:Quincey Koziol2006-08-261-77/+171
| | | | | | | | | | | | | | | | | Refactor the file storage of "twig" nodes in the B-tree to allow them to store more records, increasing the average density of the B-tree 30-40%. Increase # of records in "insert lots" regression test to still create B-tree of depth 4 Update h5debug to interpret difference of 'branch' and 'twig' internal nodes in B-tree correctly. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12619] Description:Quincey Koziol2006-08-231-53/+56
| | | | | | | | | | | Fix off-by-one error in computing the size of metadata prefixes for v2 B-tree internal & leaf nodes. General code cleanup and reformating. Tested On: Mac OS X.4/PPC (amazon) Too minor to require h5committest
* [svn-r12615] Description:Quincey Koziol2006-08-221-5/+4
| | | | | | | | Add checksum to v2 B-tree metadata. Tested On: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12589] Description:Quincey Koziol2006-08-171-2/+2
| | | | | | | | | | | | | | Revert passing the v2 B-tree class to callbacks, it turns out to be unnecessary. Also revert have a "class private" pointer for each v2 B-tree class. Add in support for the different flavors of fractal heap 'huge' objects also. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12561] Description:Quincey Koziol2006-08-101-22/+40
| | | | | | | | | | | | Update code formatting a little and refactor to add a better mechanism for performing callbacks when removing records from the B-tree or deleting entire B-tree. Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS 10.4 (amazon)
* [svn-r12093] Purpose:Quincey Koziol2006-03-151-0/+6
| | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap changes - mostly internal changes to better handle more direct blocks from root indirect block. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) Mac OS X (amazon)
* [svn-r11968] Purpose:Quincey Koziol2006-02-271-0/+3357
Incrementtal checkin Description: Revise & update v2 B-tree code to separate the internal package-specific routines from the library-callable "private" routines. Similar updates for the fractal heap code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon)
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