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* [svn-r22761] Purpose: Fix testswmr failuresNeil Fortner2012-09-131-0/+2
| | | | | | | | | | Description: Patched H5B2 shadowed list implementation to remove nodes from the shadowed list when they are evicted, and added some missing initializations. Also removed inadvertent temporary changes to the tests that disabled srandom, added assertions and fixed formatting. Tested: ummon
* [svn-r22422] Purpose: Add support for SWMR with v2 b-treesNeil Fortner2012-05-301-23/+39
| | | | | | | | | | | | | Description: Adds SWMR support to the v2 b-trees when used as a chunk index. Because each node keeps track of the total number of records reachable through each of its children, nodes must be shadowed every time a descendent record is inserted or removed. This implementation prevents this from happening, however, if the node has already been shadowed since the last time the v2 b-tree header was flushed. Also modified SWMR test to include v2 b-trees. Tested: jam, koala, ostrich (h5committest), durandal Note: There is a preexisting failure in the ph5diff (-v) test
* [svn-r19378] Modifications to using v2 B-tree as index for chunked datasets ↵Vailin Choi2010-09-131-3/+3
| | | | | | with >1 unlimited dimensions. h5committested.
* [svn-r19050] Description:Quincey Koziol2010-07-061-2/+3
| | | | | | | | | | | | | | | | | | | | Bring r18704:19049 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18708] Description:Quincey Koziol2010-05-051-6/+24
| | | | | | | | Bring r18638:18704 from trunk to revise_chunks branch. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug & production (h5committest not required on this branch)
* [svn-r18639] Description:Quincey Koziol2010-04-271-1/+1
| | | | | | | | Bring r18619:18638 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) w/debug (h5committest not required on this branch)
* [svn-r18582] Description:Quincey Koziol2010-04-151-1/+1
| | | | | | | | | | | | | | | | | | | | | Bring r18533:18581 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18534] Description:Quincey Koziol2010-04-081-6/+5
| | | | | | | | | | | | | | | | | | Bring r18446:18533 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18451] Description:Quincey Koziol2010-03-251-3/+3
| | | | | | | | | | | | | | | | | | Bring r18172:18446 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r17946] Description:Quincey Koziol2009-12-011-3/+6
| | | | | | | | | | | | | | | | | | | | Bring r17899:17945 from trunk to revise_chunks branch Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17896] Description:Quincey Koziol2009-11-161-91/+111
| | | | | | | | | | | | | | | | | | | | | | | | Bring r17546:17895 from trunk to revise_chunks branch. Changes to fixed and extensible array dataset chunk indexing code to accommodate changes to private APIs in those interfaces. Also, other adjustments to source code and expected output in response to changes on the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16846] Description:Quincey Koziol2009-04-231-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | Fix broken (for how long?) H5_ASSIGN_OVERFLOW macro to actually detect overflows during assignments, along with several errors it [now] detected. Cleaned up a fix minor warnings and/or pieces of code also. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15676] Description:Quincey Koziol2008-09-221-9/+1
| | | | | | | | | | | | | | | | | | | | | | | Centralize all macros for declaring "magic numbers"/signatures for objects in the file into src/H5Fprivate.h, so it's easier to know what values have already been defined, etc. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r14020] Description:Quincey Koziol2007-07-261-1/+1
| | | | | | | | | | | Correct error in size of v2 B-tree metadata prefix, which could cause too many entries to get inserted into a node, eventually causing either a file corruption bug (if debugging asserts were off) or a core dump on the assertion which checked this. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13984] Description:Quincey Koziol2007-07-171-4/+1
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-131-0/+5
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12914] Description:Quincey Koziol2006-11-141-0/+7
| | | | | | | | Checkpoint partially working v2 B-tree delete by index code (ifdef'ed out) for further work. Tested on: Linux/32 2.6 (chicago)
* [svn-r12647] Description:Quincey Koziol2006-09-051-2/+2
| | | | | | | | | Eliminate redundant "B-tree type" byte from internal & leaf nodes. May possibly improve B-tree density in rare circumstances... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12644] Description:Quincey Koziol2006-09-051-28/+34
| | | | | | | | | | | | | Improve density of the B-tree further. For greater depths of B-trees, the gains are over 100%... Also, don't split internal nodes with 3->4 splits, use a 1->2 split instead, so that the density of the nodes around a split is maximized. Tested: Mac OS X/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12638] Description:Quincey Koziol2006-09-041-1/+14
| | | | | | | | | | | | Split edge nodes in the tree with a 1->2 node split, instead of a 2->3 node split, which creates a more dense tree when a pattern of record insertions occurs (because it leaves behind full nodes instead of 2/3 full nodes). Tested: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Solaris/64 2.9 (shanti)
* [svn-r12631] Description:Quincey Koziol2006-08-261-10/+32
| | | | | | | | | | | | | | | | | Refactor the file storage of "twig" nodes in the B-tree to allow them to store more records, increasing the average density of the B-tree 30-40%. Increase # of records in "insert lots" regression test to still create B-tree of depth 4 Update h5debug to interpret difference of 'branch' and 'twig' internal nodes in B-tree correctly. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12619] Description:Quincey Koziol2006-08-231-7/+25
| | | | | | | | | | | Fix off-by-one error in computing the size of metadata prefixes for v2 B-tree internal & leaf nodes. General code cleanup and reformating. Tested On: Mac OS X.4/PPC (amazon) Too minor to require h5committest
* [svn-r12615] Description:Quincey Koziol2006-08-221-3/+16
| | | | | | | | Add checksum to v2 B-tree metadata. Tested On: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12561] Description:Quincey Koziol2006-08-101-3/+6
| | | | | | | | | | | | Update code formatting a little and refactor to add a better mechanism for performing callbacks when removing records from the B-tree or deleting entire B-tree. Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS 10.4 (amazon)
* [svn-r12474] Quincey Koziol2006-07-151-5/+0
| | | | | | | | Clean up some compiler warnings. Tested on: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12077] Purpose:Quincey Koziol2006-03-111-0/+5
| | | | | | | | | | | Code cleanup Description: Fix/update formatting, clean up typos, etc. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11968] Purpose:Quincey Koziol2006-02-271-0/+39
| | | | | | | | | | | | | | Incrementtal checkin Description: Revise & update v2 B-tree code to separate the internal package-specific routines from the library-callable "private" routines. Similar updates for the fractal heap code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon)
* [svn-r11966] Purpose:Quincey Koziol2006-02-271-12/+19
| | | | | | | | | | | | Code cleanup Description: Style fixes for consistency & other minor cleanups Platforms tested: FreeBSD 4.11 (sleipnir) Mac OSX (amazon) Linux 2.4
* [svn-r10094] Purpose:Quincey Koziol2005-02-261-0/+4
| | | | | | | | | | | | | | | New features & refactor Description: Add basic record removal (only handles level-0 B-trees currently) Add query routine to check the number of records in a B-tree Add debugging routine to check the address of the root node in the B-tree Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r9986] Purpose:Quincey Koziol2005-02-111-11/+11
| | | | | | | | | | | | | | | | | | | New feature & code cleanup Description: Change some references from 'keys' to 'records', which is more correct for this implementation. Added feature to allow preemptive 3 node record redistributions (for leaves only currently) Added feature to perform preemptive 3->4 node splits (for leaves only currently) Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti) w/purify Too minor to require h5committest
* [svn-r9971] Purpose:Quincey Koziol2005-02-091-1/+6
| | | | | | | | | | | | New feature Description: Checkpoint v2 B-tree code after getting 2 leaf record redistribution working and tested. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9955] Purpose:Quincey Koziol2005-02-081-0/+16
| | | | | | | | | | | | | | New feature & bug fix Description: Allow h5debug tool to dump "test" v2 B-trees correctly. Also, fix incorrect parameter passing that was causing failures on various platforms. Platforms tested: FreeBSD 4.11 (sleipnir) AIX 5.2 (copper)
* [svn-r9939] Purpose:Quincey Koziol2005-02-041-5/+64
| | | | | | | | | | | | | New feature Description: Expand v2 B-tree code to support splitting the root node when enough records are inserted and move metadata cache callbacks into their own source file. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor for h5committest
* [svn-r9928] Purpose:Quincey Koziol2005-02-031-0/+118
New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
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