| Commit message (Collapse) | Author | Age | Files | Lines |
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Minor code cleanup to align w/revise_chunks branch.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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--enable-using-memchecker.
Tested on jam, ostrich, moohan, osx1010test, quail, kite, mayll.
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in the cache tests, and made some huge static arrays dynamic
in the cache tests.
Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1
Autotools serial
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Extract query routines into separate source module.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Bring r29934 from revise_chunks branch to trunk:
(1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit.
(2) Modifications to better handle error recovery when conversion by h5format_convert fails.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush
from revise_chunks branch to trunk. Brings along updated metadata cache
entry tagging, and the internal object flush routine.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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No significant code changes. Smoke checked on 64-bit Windows 10
with VS 2015 Pro.
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Change compare callback in Btree2 class to correctly account for errors.
tested on bb-8.
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Normalize against the trunk, in preparation for final merge.
Tested on:
MacOSX/64 10.11.3 (amazon) w/serial & parallel
(h5committest not required on this branch)
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triggering a segfault in the log_flush call in
H5C__flush_single_entry().
tested on Jam with Parallel.
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renaming metadata dxpl properties.
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checks from metadata dxpls
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
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Normalize against changes on phdf5_metadata_opt branch to trunk
Tested on:
MacoSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
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Review revisions on the way to the trunk.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest not required on this branch)
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Minor code tweaks and cleanups during review.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5comittest not required on this branch)
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Bring r28708 from revise_chunks branch:
Fix earray, farray and btree2 use of incorrect file pointer when two files
are opened and used to access the data structure. Misc. minor code cleanups
as well.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
h5committest forthcoming
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Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
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Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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Misc. minor cleanups in preparation for merging "metadata rings" branch to
trunk.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(Too minor to require h5committest)
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- disable the metadata coll hint for smoke checks 1 & 2.
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Separate H5AC layer from using package-scoped pieces of the H5C layer,
moving from including H5Cpkg.h to H5Cprivate.h.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial, parallel & production
Linux/32 2.6.x (jam) w/serial & parallel
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Correct error with braces around macro (in production builds), also clean
up a few warnings.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial, parallel & production
Linux/32 2.6 (jam) w/serial & parallel
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Clean up parameters to H5C__flush_single_entry: accept cache entry instead
of address, and make new flag for deleting entry from skiplist on destroy
instead of a separate parameter to the routine.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
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Split parallel metadata cache code into separate source code modules.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
(too minor for h5committest)
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branch.
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Merge v3 metadata cache changes to trunk. Yay! :-)
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(daily tested on branch)
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Clean up compiler warnings before merging in v3 metadata cache changes
from branch.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
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Large code cleanups and optimizations, in preparation for the upcoming
v3 metadata cache merge.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
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Normalize trunk against the metadata_cache_merge branch, in preparation
for merging the branch into the trunk.
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/64 2.6.x (koala) w/serial
Linux/32 2.6.x (jam) w/serial & parallel
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* H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN
tested with h5committest.
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Clean up H5B interface, to align w/v3 metadata cache changes
Tested on:
MacOSX/64 10.10.3 (amazon) w/serial & parallel
Linux/32 2.6.* (jam) w/serial & parallel
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fix bugs where hid_t were assumed to be 32 bit ints or herr_t.
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uninitialized variable bug in passing.
Added the H5C_get_entry_ptr_from_addr() and H5C_verify_entry_type()
in H5C.c, along with their pass through functions in H5AC.c. Note
that H5C_get_entry_ptr_from_addr() is quite slimey, and should be
avoided if possible.
Updated fractal heap to use flush ordering to force children
in the hdr / iblock / dblock tree to be flushed prior to parents.
This is part of a port of the fractal heap to the V3 cache, although
I gather that it will also be useful for SWMR.
Added sanity checking code to the fractal heap to verify that direct
blocks are flushed before their parent indirect blocks, child indirect
block are flushed prior to their parent indirect blocks, and that the
root iblock or dblock is flushed prior to the header
Tested on:
Jam: Serial and parallel
Phoenix (Debian): serial, debug and production
amazon (MacOS): serial
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More migration to using H5F_io_info_t pointers and away from using
property list IDs internally. Also, clean up some compiler warnings in the
cache code.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
(h5committest forthcoming)
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Clean up compiler warnings
Tested on:
Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN
(too minor to require h5committest)
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Clean up warnings, switch library code to use Standard C/POSIX wrapper
macros, remove internal calls to API routines, update checkapi and checkposix
scripts.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
Big-Endian Linux/64 (ostrich)
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Stop aliasing property to indicate internal collective metadata operations
with property to perform collective raw data operations from the application.
Tested on:
Mac OSX/64 10.8.3 (amazon) w/paralllel
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Merge "flush me last" & "flush me collectively" feature from the
avoid_truncate branch back to the trunk. (To help enable allowing the
free space section info to reside in temporary address space)
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.x, C++, FORTRAN & threadsafe
(h5committest forthcoming)
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Refactor ID class registration to be more like how other "class"s in the
library are registered, and clean up compiler warnings.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug
(Too minor to require h5comittest)
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Refactor function name macros and simplify the FUNC_ENTER macros, to clear
away the cruft and prepare for further cleanups.
Tested on:
Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
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Description:
Added new H5SL_TYPE_GENERIC skip list type, which uses void *'s as keys and a
client-supplied callback for key comparison. This was added to support the
upcoming "merge named datatype" feature for H5Ocopy, but may be used in other
places as well. Also added testing.
Also fixed a potential bug with the H5SL_TYPE_OBJ implementation, and added
testing for that.
Tested: jam, koala, heiwa (h5committest), durandal
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Clean up code a bit, move new "terminate" VFD callback to new position
in H5FD_class_t struct.
Tested on:
Mac OS X/32 10.6.7 (amazon) w/debug & production
(h5committest not required on this branch)
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Initial commit of John Biddescomb's VFD & MPI tweaks.
Tested on:
None (yet)
(h5committest not required for this branch)
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Bring Coverity revisions from branch back to trunk, and clean up some other
misc. compiler warnings also.
r19500:
Fix coverity items 1446 and 1447. Moved up calls to memset in test_cont in
ohdr.c so the test never tries to close uninitialized locations.
r19501:
Fix coverity items 1398-1445. Various uninitialized variable errors in fheap.c.
r19502:
Fixed coverity issue 579 and some additional warnings in the file as well.
r19503:
Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26
r19504:
minor mods to try to keep coverity from flagging false positives.
r19505:
Fixed coverity issues 566 - 571. Declared variables that are passed to functions that use them as arrays to be arrays of size 1.
Tested on:
Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel
(h5committested on trunk)
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