| Commit message (Collapse) | Author | Age | Files | Lines |
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* Update CI and support files to match latest from 1.14
* Correct spelling
* More spelling corrections
* spelling fixes in testpar
* Fix spelling errors in tools
* More tools spelling fixes
* Spelling fixes for rest of tools and some src
* Fix spelling errors in src files, pt 2
* Fix spelling in src pt3
* Fix spelling errors pt4
* Fix spelling errors pt5
* Spelling fix pt6
* fix spelling error examples
* fix spelling in tests
* fix spelling errors in test pt2
* Fix spelling errors in test pt3
* fix spelling in test pt4
* Fix spelling errors in hl
* fix spelling errors in c++
* Spelling fixes for fortran
* spelling fixes for bin and java
* Add relative path
* Change spelling action to use a file for list of ignore words
* Fix spelling ignore list
* remove unused file
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* clang 13 format #1933
* Correct workflow
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* Warnings fixes (#1680)
* Clean stack size warnings in sio_engine (#1687)
* Fixes stack size warnings in tcoords.c (#1688)
* Address some warnings from casting away of const (#1684)
* Fixes stack size warnings in dtransform (#1696)
* Fixes stack size warnings in set_extent test (#1698)
* Be a bit safer with signed arithmetic, thus quieting some signed-overflow warnings from GCC (#1706)
* Avoid a signed overflow: check the range of `entry_ptr->age` before
increasing it instead of increasing it and then checking the range.
This quiets a GCC warning.
* Avoid the potential for signed overflow by rewriting expressions
`MAX(0, fwidth - n)` as `MAX(n, fwidth) - n` for various `n`.
This change quiets some GCC warnings.
* Change some local variables that cannot take sensible negative values
from signed to unsigned. This quiets GCC warnings about potential
signed overflow.
* In a handful of instances, check the range of a signed integer before
increasing/decreasing it, just in case the increase/decrease overflows.
This quiets a handful of GCC signed-overflow warnings.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix object size warnings in cache.c test (#1701)
* Fix some const cast and stack/static object size warnings (#1700)
* Fix various warnings
* Move HDfree_const to H5private.h for wider use
* Print output from all ranks in parallel tests on allocation failure
* Move const pointer freeing macro to h5test.h for now
* Fixes a bug where t_cache fails due to a string size being too small (#1720)
* Fixes a bug where t_cache fails due to a string size being too small
Recent warning reductions led to an incorrect string size being passed
to h5_fileaccess, causing the test to silently fail. In addition to
fixing the bug, the test will now fail noisily on setup failures.
* Updates the t_cache test to fail noisily on setup errors
* Fix a few Clang sanitizer warnings (#1727)
* Stop lying about H5S_t const-ness (#1209)
Hyperslabs can be reworked inside several H5S callbacks, making H5S_t
non-const in some places where it is marked const. This change switches
these incorrectly const H5S_t pointer parameters and variables to
non-const where appropriate.
* Fix a few warnings after recent H5S const-related changes (#1225)
* Adjustments for HDF5 1.10
* Hdf5 1 12 Miscellaneous warnings fixes (#1718)
* Fixes const issues in the version 2 B-trees (#1172)
The operations that were changed are fundamentally not const since the
shadow operation can modify the node structure when SWMR is in use.
* Quiets const warning in H5RS code (#1181)
* Avoid calling H5Ropen_object with a misaligned H5R_ref_t: copy the (#1171)
* Avoid calling H5Ropen_object with a misaligned H5R_ref_t: copy the
raw H5R_ref_t bytes to a heap buffer that's known to have the right
alignment.
* Committing clang-format changes
* Use an automatic H5R_ref_t instead of malloc'ing one. Go ahead and
initialize the H5R_ref_t to all-0s so that arbitrary stack content
doesn't foul things up. Bail out with an error if `size` exceeds
`sizeof(H5R_ref_t)`.
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Miscellaneous warnings fixes
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix several warnings (#747)
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.
* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)
* Removes gratuitous (double)x.yF casts (#632)
* Committing clang-format changes
* Removes gratuitous (double)x.yF casts
* Committing clang-format changes
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Cleans up a const warning left over from previous constification (#633)
* Committing clang-format changes
* Adds consts to a few global variables
* Cleans up a const warning left over from previous constification
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Purges UFAIL from the library (#637)
* Committing clang-format changes
* Purges UFAIL from the library
* H5HL_insert change requested in PR
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Bmr dev hdffv 11223 (#640)
* Fixed HDFFV-11223 (CVE-2018-14460)
Description
- Added checks against buffer size to prevent segfault, in case of data
corruption, for sdim->size and sdim->max.
- Renamed data files in an existing test to shorten their length
as agreed with other developers previously.
Platforms tested:
Linux/64 (jelly)
* Committing clang-format changes
* Updated for test files
* Updated for HDFFV-11223
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Committing clang-format changes
* Restore "error:" in line 2666.
* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"
This reverts commit 426b50484841118cf633fd6147302a63a30fd746.
Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
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* HDFFV-10865 - merge from dev, HDFArray perf fix.
* Remove duplicate setting
* Whitespace changes after clang format
* Undo version 11 clang format changes
* Merge CMake changes from develop
* test testing script merge from develop
* Update supported platforms
* PR#3 merge from develop
* Merge gcc 10 diagnostics option from develop
* Merge #318 OSX changes from develop
* Merge small changes from develop
* Minor non-space formatting changes
* #386 copyright corrections for java folder
* Merges from develop
#358 patches from vtk
#361 fix header guard spelling
* Merge updates
#358 patches from vtk
#361 fix header guard spelling
* format fix
* Fix missing underscore and make H5public.h closer to dev
* Merges from develop
#340 clang -Wformat-security warnings
#360 Fixed uninitialized warnings
header guard underscore cleanup
JNI cleanup
* format alignment
* Add missing test ref file
* Merge #380 from develop
* Finish java merges from develop
* Fix java issues with tests and javadoc
* Correct use of attribute access plist
* Remove debug code
* Remove unused variable
* Change file access to read only for java tests
* Split clang format operations.
* More javadoc comments
* Remove pre-split setting
* format source
* Change windows TS to use older VS.
* Mostly all javadoc fixes, one argument rename.
* synch file
* Merge of long double fix and compiler flags
* HDFFV-11229 merge changes from develop
* HDFFV-11229 correct test script
* HDFFV-11229 update autotools test script for two ref files
* HDFFV-11229 merge dev changes for long double display in tools
* Committing clang-format changes
* minor whitespace
* remove unneeded macro
* Committing clang-format changes
* Add "option" command for clang options
* Rework CMake add_custom to use the BYPRODUCTS argument
Update pkgconfig scripts for parallel builds.
Fix install COPYING file reference.
Remove unused round defines.
Change CMake default setting of BUILD_CPP to off.
* Fortran target depends
* Remove incorrect source attribute
* Revert define removal
* printf specifiers and VS2015 min changes
* Committing clang-format changes
* Add time struct
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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* close #195. (#196)
* Update HDF5PluginMacros.cmake
* Update HDF5PluginMacros.cmake
* Modify temporary rpath for testing in java example scripts. (#230)
* Fix undefined left shifting of negative numbers (#338)
Undefined Bahavior Sanitizer errored here about left shifting negative numbers.
* Update license url (#332)
* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
* Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429)
* Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes
Removes useless const declarations.
* Fixed most readability-non-const-parameter warnings
These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature.
* Reformat source with clang v10.0.1.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Added C++11 override keyword where appropriate (#433)
Added H5_OVERRIDE macro for compatibility with both C++11 and older.
* Various clang tidy warning fixes (#448)
* Fixed clang-tidy bugprone-reserved-identifier warnings
* Fixed clang-tidy bugprone-assert-side-effect warnings
* Fixed clang-tidy bugprone-copy-constructor-init warning
* Fixed clang-tidy readability-redundant-preprocessor warning
For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block.
Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing. Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS.
* Fixed clang-tidy readability-redundant-string-init warnings
* Fixed some clang-tidy performance-type-promotion-in-math-fn warnings
* Fixed clang-tidy performance-unnecessary-value-param warnings
* Reformat source with clang v10.0.1.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Removed checks/workarounds for pre-C++89 compatibility (#449)
After 30+ years, just assume that the following exist:
- extension-less includes
- namespaces
- std::
- static_cast
- bool
* Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)
* Fixed all clang-tidy bugprone-suspicious-string-compare warnings
This change was generated entirely by clang-tidy itself.
* Reformat code with clang v10.0.1.
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
* Fix clang-tidy suspicious string compare in H5A.c missed in merge.
Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
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* close #195. (#196)
* Update HDF5PluginMacros.cmake
* Update HDF5PluginMacros.cmake
* Modify temporary rpath for testing in java example scripts. (#230)
* Fix undefined left shifting of negative numbers (#338)
Undefined Bahavior Sanitizer errored here about left shifting negative numbers.
* Update license url (#332)
* Modify temporary rpath for testing in java example scripts.
* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.
Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
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the H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS macro is defined.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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1) Added code test/page_buffer.c to verify that page buffering is
disabled in parallel builds.
2) Added code to test/cache_image.c to verify correct interaction
between evict on close and cache image -- in particular management
of a file containing a cache image containing dirty metadata that
has been opened R/O. Also fix for the bug exposed.
3) Added code to testpar/t_cache_image.c to verify expected procedure
for reading cache images, and also supporting stats collection code
needed for the test.
4) Repair of an overactive sanity check in H5C__reconstruct_cache_contents().
5) Other minor tidies in passing.
Tested serial and parallel, debug and production on Jelly.
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a cache image.
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page_buffering branch yet. Also, bring over improvements to flush candidate
entries for parallel code.
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entries from collective metadata read list
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