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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-36/+29
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| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-6/+6
| | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-6/+6
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * [svn-r28916] Description:Quincey Koziol2016-01-151-18/+9
| | | | | | | | | | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r28894] Description:Quincey Koziol2016-01-141-4/+5
| | | | | | | | | | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-4/+0
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28452] Description:Quincey Koziol2015-11-231-4/+0
| | | | | | | | | | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27972] merge from trunk.Mohamad Chaarawi2015-10-061-4/+20
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| * [svn-r27939] Remove H5D__iterate and use H5S_select_iterate directlyJerome Soumagne2015-10-021-3/+19
| | | | | | | | | | Add internal library callback to H5S_select_iterate to avoid having to pass hid_t objects internally
* | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-49/+4
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| * [svn-r27768] Description:Quincey Koziol2015-09-141-49/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
| * [svn-r27612] Description:Quincey Koziol2015-08-291-36/+8
| | | | | | | | | | | | | | | | | | Align w/vds branch: Whitespace cleanup, move common code for opening a dataset into a new routine, misc. style cleanups. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest upcoming)
* | [svn-r27050] merge from trunk.Mohamad Chaarawi2015-05-111-2/+3
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| * [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-1/+1
| | | | | | | | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-123/+79
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25555] - rework the public H5VL wrappers to not use H5VL_t* and use a ↵Mohamad Chaarawi2014-08-261-23/+31
| | | | | | | | | | | | | | plugin hid_t instead - rework the private VL layer to use the class structure directly - some bug fixes
* | [svn-r25537] VOL framework changes.Mohamad Chaarawi2014-08-191-24/+26
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* | [svn-r25521] major rework of the internal setup of VOL plugins to make it moreMohamad Chaarawi2014-08-081-1/+1
| | | | | | | | | | | | | | symmetrical to VFDs and allow new functionality to be implemented later. + some Bug fixes
* | [svn-r25482] - update is_accessible implementation to use fapl and pass it ↵Mohamad Chaarawi2014-07-241-5/+5
| | | | | | | | | | | | | | | | | | | | down to H5Fint.c - move is_HDF5 inside deprecated macros in H5Fpublic.h - move H5ES_status_t outside of H5VLpublic.h to H5ESpublic.h - rename public properties in H5VLpublic.h to H5VL_PROP_* to add more scoping - no need to include private if pkg is included in H5VLnative.c - rename plist_id to lapl_id in loc_params structs
* | [svn-r25476] - fix error output in several places.Mohamad Chaarawi2014-07-231-4/+4
| | | | | | | | | | - uncomment tests to check error output in Makefiles. - fix bug in native implementation of H5Aiterate.
* | [svn-r25471] merge from trunk and resolve conflicts.Mohamad Chaarawi2014-07-231-1/+0
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| * [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-186/+7
| | | | | | | | tested with h5committest.
* | [svn-r25456] fixing a few things and more realignment with trunk.Mohamad Chaarawi2014-07-211-47/+29
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* | [svn-r25422] minor changes to enum structs.Mohamad Chaarawi2014-07-161-2/+2
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* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-6/+26
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| * [svn-r25084] Description:Quincey Koziol2014-04-231-7/+2
| | | | | | | | | | | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
| * [svn-r24998] Description:Quincey Koziol2014-04-091-0/+24
| | | | | | | | | | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* | [svn-r24381] Update VOL implementation for H5Tget_create_plist to have the VOLMohamad Chaarawi2013-10-311-1/+2
| | | | | | | | | | | | | | | | | | plugin create the ID if the datatype is committed. This makes it consistent with other get operations in the VOL that return an ID. Tested: Jam
* | [svn-r24311] change event queue to event stack (just variable names)Mohamad Chaarawi2013-10-171-17/+17
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* | [svn-r23834] merge from trunk up to r23833.Mohamad Chaarawi2013-06-271-32/+43
|\ \ | |/ | | | | Fixed several conflicts, mostly because calling API routines internally was removed from several places in the trunk.
| * [svn-r23713] Description:Quincey Koziol2013-05-211-22/+25
| | | | | | | | | | | | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* | [svn-r23694] merge from trunkMohamad Chaarawi2013-05-101-1/+1
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| * [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some ↵Raymond Lu2013-04-291-5/+42
| | | | | | | | | | | | | | | | | | protection measures: 1. If any opened object uses the filter, let it fail. 2. Flush all opened files to push any cached data to files. Tested with h5committest.
* | [svn-r23473] Update the VOL plugin callbacks with better async I/O support:Mohamad Chaarawi2013-03-281-17/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - change hid_t req in callbacks to void **req - change all callbacks to accept dxpl_ids (except dataset write and read which already do) - update all the private and public VL routines to accept a dxpl_id and event queue id - Add an async class for the VOL plugin with cancel, test, and wait request operations - add the external VOL log plugin test to the examples directory NOTE that async operations are still not provided by the HDF5 API, so all event queue IDs and requests passed to all plugins are NULL for now. Tested on jam.
* | [svn-r22584] merge from trunk and resolve type ID registrationMohamad Chaarawi2012-07-161-1/+0
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| * [svn-r22582] Description:Quincey Koziol2012-07-161-2/+0
| | | | | | | | | | | | | | | | | | Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
| * [svn-r22490] I took out the "return an error" line in H5Dget_offset, to ↵Raymond Lu2012-06-251-2/+0
| | | | | | | | | | | | | | | | match what the RM says about the function behavior. Quincey added it some time ago without realizing it caused test errors (Issue 8072). Tested on ostrich, MacGoblin - simple change.
* | [svn-r22549] Mohamad Chaarawi2012-07-101-11/+0
| | | | | | | | | | | | | | | | | | | | move ref count management on the VOL struct inside the VLint code - H5Freopen still needs to be handled create the public interface for VOL callbacks: - unresolved issue with var_args update and create new API fapl calls to support stacking drivers: - need to add fapl copy callback fix a memory leak with registration of external plugins
* | [svn-r22542] update H5I_register_type usage to take a free_aux function callbackMohamad Chaarawi2012-07-101-1/+1
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* | [svn-r22532] fix more named datatype issues.Mohamad Chaarawi2012-07-091-1/+5
| | | | | | | | move the dataset ID registration to H5Dint where the term_interface func is located
* | [svn-r22523] - rework how IDs for VOL objects are createdMohamad Chaarawi2012-07-061-18/+5
| | | | | | | | | | - change how the vlose routine is registered with VOL IDs - some bug fixes
* | [svn-r22519] - many bug fixesMohamad Chaarawi2012-07-051-1/+0
| | | | | | | | - still some unresolved issues with named datatypes
* | [svn-r22511] - remove the internal file type and use the file ID created at ↵Mohamad Chaarawi2012-07-031-4/+4
| | | | | | | | | | | | | | the API level for the native implementation - work on fixing the named datatype issue.. still not resolved - branch still not stable and tests do not pass at this point
* | [svn-r22501] change the interface callbacks for the VOL to use objects ↵Mohamad Chaarawi2012-06-281-24/+253
| | | | | | | | | | | | pointers and public VL structure instead of IDs. tests will fail now because of named datatypes.
* | [svn-r22417] rename the properties used for the VOL callbacks.Mohamad Chaarawi2012-05-291-5/+5
| | | | | | | | move them to the VOL public header.
* | [svn-r22395] remove the high level ID implementation that wraps the actual ↵Mohamad Chaarawi2012-05-231-5/+4
| | | | | | | | | | | | ID, and store the VOL plugin in an auxilary structure in the ID pointer.
* | [svn-r22306] add a request id to each of the VOL callbacks and update the nativeMohamad Chaarawi2012-04-201-13/+13
| | | | | | | | plugin to pass a NULL request
* | [svn-r22297] merge from trunkMohamad Chaarawi2012-04-181-10/+12
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| * [svn-r22287] Description:Quincey Koziol2012-04-161-15/+20
| | | | | | | | | | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* | [svn-r22279] implement the attribute delete VOL callbackMohamad Chaarawi2012-04-111-1/+2
| | | | | | | | use the VOL get_space instead of the API routine in vlen_get_size
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