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* [svn-r14421] Description:Quincey Koziol2008-01-151-1/+1
| | | | | | | Minor cleanups and clarifications to prototype information. Tested on: Mac OS X/32 10.5.1 (amazon)
* [svn-r14271] Description:Quincey Koziol2007-11-201-3/+3
| | | | | | | | | | | | | | | | | | | Avoid copying maximum dimensions for temporary dataspaces used for describing chunks during raw data I/O. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14228] Description:Quincey Koziol2007-11-011-1/+1
| | | | | | | | | | | | | | | | | Change H5Llink to H5Olink, which makes more sense. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14203] Description:Quincey Koziol2007-10-111-2361/+16
| | | | | | | | | | | | | | | | | | | Break up H5D source file into H5D/H5Dint/H5Ddeprec Attempt fix for "szip noencoder" build failure. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14192] Description:Quincey Koziol2007-10-081-34/+35
| | | | | | | | | | | | | | | | | | Deprecate H5Dextend in favor of H5Dset_extent (without using API versioning, due to changed behavior) and switch internal usage to H5Dset_extent Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14017] Description:Quincey Koziol2007-07-261-6/+10
| | | | | | | | | | | Fix problem with fill value messages where the version of the format for a fill value message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r14012] Description:Quincey Koziol2007-07-241-0/+7
| | | | | | | | | | | | | Fix problem with I/O pipeline messages where the version of the format for a I/O pipeline message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14010] Description:Quincey Koziol2007-07-241-17/+62
| | | | | | | | | | | | | | | Fix problem with dataspace messages where the version of the format for a dataspace message could depend on the "use the latest format" flag from the file after it was initially created. Also, move debuging routine into separate file. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon) Solaris/32 2.10 (linew)
* [svn-r14004] Description:Quincey Koziol2007-07-241-4/+13
| | | | | | | | | | | | Fix problem with datatype messages where the version of the format for a datatype message could depend on the "use the latest format" flag from the file after it was initially created. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Mac OS X/32 10.4.10 (amazon)
* [svn-r13984] Description:Quincey Koziol2007-07-171-0/+1
| | | | | | | | | | | Various code cleanups and refactor recent changes for h5stat to fit into the existing library data structures better. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13978] purpose:Vailin Choi2007-07-131-1/+0
| | | | | | | | | | | | | | New feature. Description: Added routines to report on the amount of storage for: 1) 1.6 btree and heap storage info for groups 2) 1.8 btree, fractal heap storage info for groups, attributes and SOHM table 3) btree storage for chunked datasets 4) 1.8 superblock extension size. Platform tested: h5committested.
* [svn-r13932] Description:Quincey Koziol2007-07-031-123/+0
| | | | | | | | | Move H5Dextend() to the deprecated routine list. Tested on: Mac OS X/32 10.4.10 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13842] Description:Quincey Koziol2007-06-081-15/+3
| | | | | | | | | | | | Fix compact dataset storage to initialize VL datatype fill values correctly. Also, fix bug in global heap code when the fix action on a global heap is to delete an object in a heap with no free space. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13836] Description:Quincey Koziol2007-06-051-18/+17
| | | | | | | Minor code cleanups Tested on: Mac OS X/32 10.4.9 (amazon)
* [svn-r13827] Description:Quincey Koziol2007-06-011-1/+4
| | | | | | | | | Close another memory leak for VL fill values, and clean up some temporary data structures on error. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.9 (amazon)
* [svn-r13825] Description:Quincey Koziol2007-05-311-3/+51
| | | | | | | | | Incremental step forward in fixing problems with fill values that have a variable-length daattype. This set of changes fixes problems with the copying the property list values. tested Tn: Mac OS X/32 10.4.9 (amazon)
* [svn-r13784] Description:Quincey Koziol2007-05-221-2/+8
| | | | | | | | Close memory leak in error situation for opening a dataset. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13773] Description:Quincey Koziol2007-05-201-35/+35
| | | | | | | Reduce compiler warnings w/gcc 4.2 Tested on: FreeBSD/32 6.2 (duty) w/gcc 4.2
* [svn-r13753] Description:Quincey Koziol2007-05-141-5/+16
| | | | | | | | | | | | | Check in "unique, but sharable" optimization to ISOHM code, which allows object header messages that are only used in one object to remain in the sole user's header, but migrates messages that are used in more than one header into the ISOHM heap. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13745] Description:Quincey Koziol2007-05-101-11/+31
| | | | | | | | | | | | Take further advantage of the readers/writer locking in the metadata cache and push the locking of the local heap up to the routines which call B-tree routines, which should drastically lower the number of metadata cache protect/ unprotect calls. Tested on: Mac OS X/32 10.4.9 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13743] Description:Quincey Koziol2007-05-101-1/+1
| | | | | | | | | | | Don't delete chunks from the dataset's B-tree while we are iterating over the B-tree, when reducing the size of the dataset's dataspace with H5Dset_extent(). Tested on: Mac OS X/32 2.6 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13721] Description:Quincey Koziol2007-05-011-5/+20
| | | | | | | | | | | | | Add "fail if unknown" and "mark if unknown" flags to object header messages. This gives the library a clean way to tell older libraries that a message should not be just ignored if it's unknown, but that other actions should occur. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13682] Description:Quincey Koziol2007-04-181-1/+2
| | | | Run bin/reconfigure to update infrastructure files/information.
* [svn-r13636] Description:Quincey Koziol2007-04-111-170/+124
| | | | | | | | | | | | | | Change H5[D|G|T]<foo>_expand() "temporary" API routines to H5[D|G|T]<foo>2() "versioned" routines. Also added H5[D|G|T](create|commit)_anon() routines to continue to allow "anonymous" objects to be created in a file. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13475] There's a configure issue linking szip's shared libraries when ↵Mike McGreevy2007-03-081-5/+5
| | | | | | | | | | | | running on kagiso. The static szip libraries are working as intended, but when shared szip libraries are present and intended for use they cannot be opened. A check has been implemented to test if shared szip libraries are functional on current platform. If they are not, and the user is trying to use them, szip is now disbaled and the user is informed. This issue occurs on kagiso, and the resolution was tested on kagiso.
* [svn-r13390] Description:Quincey Koziol2007-02-261-10/+9
| | | | | | | | Make H5O_protect/H5O_unprotect use pinned cache entries instead of protected entries (allowing the object header routines to be semi-reentrant). Tested on: FreeBSD 6.2 (duty)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13240] Description:Quincey Koziol2007-02-051-9/+9
| | | | | | | | | | More cleanups on the object header message handling code, to make it easier to work with and move forward on the creation order coding. Various other minor cleanups & warning fixes. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13223] Description:Quincey Koziol2007-01-301-4/+5
| | | | | | | | | | | | Move datatype messages into new shared message method interface Clean up various formatting & compiler warnings Minor optimizations Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13217] Description:Quincey Koziol2007-01-291-7/+9
| | | | | | | | | | | Move fill value messages into new shared message method calling scheme. Only update an opened dataset's fill value property if it's different from the default fill value settings. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13167] Description:Quincey Koziol2007-01-221-662/+497
| | | | | | | | | | | Get rid of two different types of fill value struct (merge H5O_fill_t and H5O_fill_new_t) and clean up & simplify dataset initialization code. (In preparation for shared object header message method call refactoring). Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13155] Description:Quincey Koziol2007-01-191-2/+14
| | | | | | | | | | | | | | Add "set_crt_index" and "get_crt_index" methods for the object header message class. Unify fractal heap definitions for shared messages and attributes, under "object header" fractal heap definitions. Initial code for adding creation order index to object header messages. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13129] More refactoring. Moved index versions to the index header, so ↵James Laird2007-01-091-14/+2
| | | | | | | | that an index can be read all at once. This changes the file format! Tested on Windows, kagiso, and smirom.
* [svn-r13068] Ran bin/reconfigure. Some of the scripts have been changed or ↵James Laird2006-12-181-17/+17
| | | | | | | | | haven't been run in a while, so many of the source files were updated with tracing macros, etc. No code changes by me. Tested on kagiso and smirom.
* [svn-r13015] Description:Quincey Koziol2006-12-041-23/+23
| | | | | | | | | | | Migrate more object header routines to use the H5O_msg_ prefix and put them into the src/H5Omessage.c code module. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13012] Description:Quincey Koziol2006-12-031-19/+19
| | | | | | | | | | | | | | Refactor object header code to separate process of creating an object header message from the process of writing to an existing one. Start renaming operations that deal with object header messages to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r12997] Description:Quincey Koziol2006-11-291-7/+7
| | | | | | | | | | Rename too generic "H5O_FLAG_<foo>" flags that are used as flags for header messages to "H5O_MSG_FLAG_<foo>", in order to make their use clearer. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12994] Description:Quincey Koziol2006-11-291-17/+24
| | | | | | | | | | | | | | | Propagate object creation properties up into group, dataset and named datatype property lists, when those property lists are retrieved for existing objects in a file. Also, add H5Tget_create_plist() API routine, to allow named datatype property lists to be retrieved for named datatypes. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12963] Description:Quincey Koziol2006-11-211-2/+8
| | | | | | | | | | Refactor internal code that retrieves the object's type to use the new H5O_type_t (which only definitions for object types, instead of links as well) instead of the older H5G_obj_t (which included links, etc.) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-2/+14
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12842] Description:Quincey Koziol2006-11-021-870/+18
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12769] Description:Quincey Koziol2006-10-161-53/+50
| | | | | | | | | | | Move object header creation past several internal possibilities for errors, making the routine more resistant to errors encountered. Also, various formatting/compiler warning cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12756] Description:Quincey Koziol2006-10-121-1/+1
| | | | | | | | | | | | | | Clean up some object header code in advance of more major changes in the near future. Fix small initialization error in attribute message name buffer copy. Tweak down the default # of messages for new object headers. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Mac OS/32 10.4.8 (amazon)
* [svn-r12740] Description:Quincey Koziol2006-10-101-1/+6
| | | | | | | | | | | Update datasets and the layout, attributes and fill-value object header messages to use the latest version of the file format flag. Tested on: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping)
* [svn-r12706] Description:Quincey Koziol2006-10-021-6/+6
| | | | | | | | | Clean up some of the warnings on 64-bit Linux... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) Too minor to require h5committest
* [svn-r12604] Description:Quincey Koziol2006-08-211-1/+1
| | | | | | | | | Change call from H5O_loc_free() to H5G_name_free() when certain dataset open failures are generated. Tested on: Linux/32 2.6 (chicago) Too minor to require h5committest
* [svn-r12596] Refactored how external files are opened and closed.James Laird2006-08-181-17/+34
| | | | | | | | Object header locations (H5O_loc_t's) can now "hold open" a file and decrement its open object count when they close. This means that locations (H5O_loc_t's and H5G_loc_t's) should always be freed. Added more thorough tests to ensure that external files are closed.
* [svn-r12553] This check-in includes the following part of parallel ↵MuQun Yang2006-08-091-1/+7
| | | | | | | | | | | | | | | optimization codes: 1. Provide another option for users to do independent IO with MPI file setview(collectively) 2. With the request of collective IO from users, using Independent IO with MPI file setview if we find collective IO is not good for the applications for IO per chunk(multi-chunk IO) case. Previously we used pure independent IO and that actually performed small IO(IO each row) for this case. The recent performance study suggested the independent IO with file setview can acheieve significantly better performance than collective IO when not many processes participate in the IO. 3. For applications that explicitly choose to do collective IO per chunk case, the library won't do any optimization(gather/broadcast) operations. The library simply passes the collective IO request to MPI-IO. Tested at copper, kagiso, heping, mir and tungsten(cmpi and mpich) Kagiso is using LAM, t_mpi test was broken even. The cchunk10 test failed at heping and mir. I suspected it was an MPICH problem. Will investigate later. Everything passed at copper. at tungsten: the old cmpi bug(failed at esetw) is still there. Other tests passed. Some sequential fheap tests failed at kagiso.
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-6/+113
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r12461] Cleaned up the names of some internal API functions, cleaned up ↵starfire2006-07-101-1/+1
| | | | | | | | | comments, fixed a few tests that used incorrect names for H5L APIs (formerly hidden behind H5_GROUP_REVISION ifdefs Mostly cosmetic changes, tested on mir.
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