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* HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce ↵Songyu Lu2019-03-221-5/+10
| | | | the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work.
* HDFFV-10658: setting and getting properties in API context:Songyu Lu2019-03-131-10/+11
| | | | | 1. external file prefix and VDS prefix. 2. the datatype, dataspace, and LCPL of the dataset for VOL connector.
* Moved private native VOL connector functions to H5VLnative_private.h.Dana Robinson2018-12-201-1/+2
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* Moved the optional enums to H5VLnative.h and converted to an intDana Robinson2018-12-181-0/+1
| | | | typedef and a set of #defines.
* Moved the native VOL connector's optional enums to theDana Robinson2018-12-151-3/+3
| | | | | public headers and renamed to include native/NATIVE in the name.
* Switch loc_params to VOL callbacks to pass struct by pointer instead of byQuincey Koziol2018-11-221-3/+3
| | | | value.
* Switch driver | plugin => connector.Quincey Koziol2018-11-041-5/+5
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* Convert dataset callbacks to standard form, for wrapping object IDs, etc.Quincey Koziol2018-10-291-60/+21
| | | | Also, fix a few attribute issues that I missed.
* Minor coding style cleanupsQuincey Koziol2018-10-281-35/+17
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* Add VOL object wrapping to API context when refreshing groups, named datatypesQuincey Koziol2018-10-271-2/+2
| | | | and objects.
* Checkpoint progress on stacking VOL plugins - all standalone regression testsQuincey Koziol2018-10-261-0/+10
| | | | in the 'test' directory appear to be working.
* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-10-251-6/+6
|\ | | | | | | stackable_vol
| * Updates to the VOL ID and object API calls.Dana Robinson2018-10-171-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This brings the H5VL code in line with the H5I code regarding naming, parameter order, etc. Several public API calls were affected by this change. These changed names to reflect their use with VOL drivers: H5VLregister() --> H5VLregister_driver() H5VLregister_by_name() --> H5VLregister_driver_by_name() H5VLunregister() --> H5VLunregister_driver() H5VLis_registered() --> H5VLis_driver_registered() This call was renamed to match H5Iregister(). The order of the first two parameters also reversed and the object pointer is now const. H5VLobject_register() --> H5VLregister()
* | Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-23/+53
|/ | | | modified: test/dsets.c
* VOL FEATUREDana Robinson2018-10-101-134/+142
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* Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-241-277/+267
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* Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-09-181-4/+4
| | | | orginally intended to support the full SWMR feature.
* Remove redundant 'is_collective' parameter from H5CX_set_loc.Quincey Koziol2018-03-271-4/+4
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* Cleanup API context function usage.Quincey Koziol2018-03-191-23/+23
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-117/+1
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
* | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-64/+183
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* Modifications based on pull request review.Vailin Choi2017-04-261-1/+1
| | | | Made couple changes based on the review comments.
* Incorporate patch from GE Healthcare (HDFFV-9934)Vailin Choi2017-04-251-0/+40
| | | | | This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r30107] Moved dataset flush and evict code to H5D_close from H5Dclose.Dana Robinson2016-06-251-36/+8
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* [svn-r30104] Fixes evict-on-close feature by propagating globalDana Robinson2016-06-241-2/+8
|\ | | | | | | | | flush flag up the function call stack and not setting it during H5Dclose().
* | [svn-r30084] First pass at the evict-on-close feature.Dana Robinson2016-06-151-4/+26
|/ | | | | | | | | | The features is controlled via H5Pset/get_evict_on_close() and is currently enabled by default (it will be disabled by default in the final implementation). There is a bug in the code where the eviction of tagged metadata fails due to some of the metadata being dirty, resulting in error return values and test failures.
* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+34
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29924] Description:Quincey Koziol2016-05-121-2/+102
| | | | | | | | Bring h5format_convert tool from revise_chunks branch to trunk. Tested on: MacoSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29850] Description:Quincey Koziol2016-05-011-0/+38
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-6/+6
| | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
* [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-6/+6
| | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* [svn-r28916] Description:Quincey Koziol2016-01-151-18/+9
| | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28894] Description:Quincey Koziol2016-01-141-4/+5
| | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28452] Description:Quincey Koziol2015-11-231-4/+0
| | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r27939] Remove H5D__iterate and use H5S_select_iterate directlyJerome Soumagne2015-10-021-3/+19
| | | | | Add internal library callback to H5S_select_iterate to avoid having to pass hid_t objects internally
* [svn-r27768] Description:Quincey Koziol2015-09-141-49/+4
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27612] Description:Quincey Koziol2015-08-291-36/+8
| | | | | | | | | Align w/vds branch: Whitespace cleanup, move common code for opening a dataset into a new routine, misc. style cleanups. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest upcoming)
* [svn-r26777] - Fix usage of the internal AC global dxplsMohamad Chaarawi2015-04-101-1/+1
| | | | | | - allocate sieve buffer with calloc instead of malloc tested with h5committest
* [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-186/+7
| | | | tested with h5committest.
* [svn-r25084] Description:Quincey Koziol2014-04-231-7/+2
| | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r24998] Description:Quincey Koziol2014-04-091-0/+24
| | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* [svn-r23713] Description:Quincey Koziol2013-05-211-22/+25
| | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r23656] Issue 8380 H5Zunregister caused seg fault: I added some ↵Raymond Lu2013-04-291-5/+42
| | | | | | | | | protection measures: 1. If any opened object uses the filter, let it fail. 2. Flush all opened files to push any cached data to files. Tested with h5committest.
* [svn-r22582] Description:Quincey Koziol2012-07-161-2/+0
| | | | | | | | | Refactor ID class registration to be more like how other "class"s in the library are registered, and clean up compiler warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5comittest)
* [svn-r22490] I took out the "return an error" line in H5Dget_offset, to ↵Raymond Lu2012-06-251-2/+0
| | | | | | | | match what the RM says about the function behavior. Quincey added it some time ago without realizing it caused test errors (Issue 8072). Tested on ostrich, MacGoblin - simple change.
* [svn-r22287] Description:Quincey Koziol2012-04-161-15/+20
| | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r21923] Description:Quincey Koziol2012-02-101-1/+1
| | | | | | | | | Add FUNC_ENTER macros for package-private routines and begin process of switching package routines to use them. All H5G routines are currently finished. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21919] Description:Quincey Koziol2012-02-091-16/+16
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r21152] Description:Quincey Koziol2011-07-281-0/+4
| | | | | | | | | | | | | | | | | | | | Further patches for Jira 7638, to ensure that H5D/Aget_type will be attached to the correct top file. (This change to the library should reverted when Jira 7638 is finally finished) Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode Mac OS X/32 10.6.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
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