| Commit message (Collapse) | Author | Age | Files | Lines |
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orginally intended to support the full SWMR feature.
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to develop
Fixed HDFFV-10481 and HDFFV-10477
* commit '83ca39ba9a2d6852dd7754b533f7839e9d2a0107':
Combined macro lines as Dana commented Platforms tested: Linux/64 (jelly) (very minor)
Fixed division-by-zero issues Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
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Platforms tested:
Linux/64 (jelly) (very minor)
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Description:
Fixed HDFFV-10481 and HDFFV-10477, division by 0.
Fixed another occurrence beside what were reported.
Also, changed a local variable to avoid an unnecessary cast.
Platforms tested:
Linux/64 (jelly)
Linux/32 (jam)
Darwin (osx1010test)
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* commit 'a8d6f100cdddbfc42d0c4abfeb4ceb8788b1b087':
Add note about single chunk caching and serial library
Add check for actually using the MPI file driver when caching one chunk
Fix error message mentioning wrong MPI function used
Fix for HDFFV-10509
Revise H5D__mpio_array_gatherv() to not allocate memory needlessly
Add test to continually grow and shrink chunks
Changes to test with checksum filter as well as deflate filter
Eliminate warning about signed to unsigned conversion
Remove unused local variable
Fix bug in parallel reads of compressed data
Add data verification to parallel filtered compound write tests
Add seven of fourteen parallel filtered data partial read tests
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Better explain rationale behind chunk caching issue fix
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Description:
Applied the typo fixes from user's report.
The previous pull request couldn't be merged because it was too old,
and it was too complicated for me to resolve conflicts.
Platform tested:
Linux/64 (jelly) - very minor
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~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing
changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
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merge_hyperslab_updates
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merge_hyperslab_updates
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improvements.
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* commit '6a1627f2967099039e11b9e86cf347f6482bdf3c':
Fix for HDFFV-10425 test failure with H5DOwrite_chunk and latest format
Fix date.
Correct the date in RELEASE.txt for H5DOread_chunk.
Add release info for H5DOread_chunk.
Updated RELEASE.txt Description: Wrappers for H5Tencode and H5Tdecode No code change.
Fixed HDFFV-10151 Description: Added a document to the HDF5 C++ API Reference Manual to show the mapping from a C API to C++ wrappers.
Fix memory leak simply by capturing allocation in var
Change max value
Chnage values so test will fail when new latest is added
Exception changed
Exception type changed
Correct constant var names
Java constants for new lib verbounds values
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unified the naming and initialization of said struct throughout
the library. This was causing a crash on VS2015 in debug mode
when the debug heap complained. Fixes HDFFV-10330.
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develop
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The function H5VM_power2up() returns the next power of 2 for n.
When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping.
The fix ensures that the function checks for n >= 2^63 and returns 0.
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* commit '6428a637752753cc8a9007c0c3c38b9ea9cc97fd': (165 commits)
Skip HDFFV-10160 filenotclosed test for split/multi driver Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting
More minor whitespace cleanup
Fixed a minor comment typo in H5R.c
* Reverted removal of H5I_REFERENCE to avoid breaking binary compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c.
Added missing free() call to test_misc19().
Purged the unused H5I_REFERENCE from the library.
Added a test for VFD IDs to testhdf5.
Revert "Partial removal of NDEBUG ifdefs from the library."
Partial removal of NDEBUG ifdefs from the library.
Removed compiler flag cleanup since Solaris chokes on it.
Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file.
Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true.
Updated the --enable-debug/production handling in configure.ac so that it more reliably indicates that the configure option can no longer be used. Previously, using --enable-debug="", etc. would not trigger an error (even though such usage is unlikely).
Added awk processing to remove extraneous whitespace from H5_ flags in configure.
Fixed a comment in configure.ac
HDFFV-10219 another mode change
HDFFV-10219 change subset to use BINARY mode for h5dump
HDFFV-10219 default input binary to NATIVE
Set default of var to NATIVE
HDFFV-10219 - disable h5dump tests until h5import NATIVE is fixed
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Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
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~DEROBINS/hdf5_der:develop to develop"
This reverts commit 4242753848c44ab3b5d226e66225eac2f64db314, reversing
changes made to b0e79fe6dd20ec7aa1b3e5f0f8b370639a4ef5bd.
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* Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
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Heathcare (HDFFV-9934)
This is the similar set of changes that was checked in to 1.8 branch:
Incorporate the code changes that were missing from the original patch:
(1) Additional tests in hl/test/test_dset_opt.c
(2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty
Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
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This is the same patch that had already been integrated to 1.8 branch (pull request #387).
Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
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hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
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develop
* commit '7883c0d01b4eadba84697c7bb3322a304d242ed6': (38 commits)
Add comments
In current implementation, list must be gathered to all
Correct error with usage of array_gather function
Make array_gather routine more general
Updated comments
Add comments to H5D_filtered_collective_io_info_t data structure
Remove debugging statements
Revert "Merge latest changes from develop"
Merge latest changes from develop
removed erroneous casts from non-rvalue H5MM_free() calls. Replaced assignment of void return values with explicit value of NULL
Fix issue with uninitialized chunk index during chunk re-insertion into index
Remove potential infinite loops caused by goto in error label region
Remove note about src_type_size vs dst_type_size
Trigger error if library tries to break to independent I/O with filters in the pipeline
Fix issue in H5D__mpio_array_gather when no one contributes anything
Iterator for initial chunk entry IO operation should use source datatype size
Fix bug where data doesn't write correctly when MEMSPACE isnt the same as FILESPACE
Check return value of H5S_GET_EXTENT_NPOINTS macro
Fix macro complaint in H5Dmpio.c
Test code for user passing one-chunk-per-process hint to library
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Description:
Some code within an "ifdef H5D_CHUNK_DEBUG" block was using outdated
data structure but not caught because the case of H5D_CHUNK_DEBUG being
defined was never tested. It was commented out.
I defined H5D_CHUNK_DEBUG, tested, and commented out again.
Platforms tested:
Linux/32 2.6 (jam)
Linux/64 (platypus)
Darwin (osx1010test)
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and the tool and API wrappers will be coming in over the weekend.
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changes from the revise_chunks branch.
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Clean up more warnings: drop the warning count from ~1310 down to ~940,
with only 31 types of warnings in 148 files (down from 38 types in 167 files).
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial & parallel
(h5committest forthcoming)
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Bring r29934 from revise_chunks branch to trunk:
(1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit.
(2) Modifications to better handle error recovery when conversion by h5format_convert fails.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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Bring h5format_convert tool from revise_chunks branch to trunk.
Tested on:
MacoSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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Bring 'none' chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
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Bring "single" chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
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Correct chunk index computation for earrays and farrays, particularly when
copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size)
that require iterating over all chunks.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial & parallel
(h5committest forthcoming)
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Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
Autotools serial w/ Java, Fortran, & C++
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Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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Bring updated code for setting chunk size information from revise_chunks
branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
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Bring "don't filter partial edge chunks" capability from revise_chunks
to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/debug, production & parallel
(h5committest forthcoming)
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