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* [svn-r22105] Description:Quincey Koziol2012-03-211-28/+28
| | | | | | | | | | Bring r20557:22085 from trunk to this branch, also fixing some other issues/failures in the branch simultaneously. The h5repack tests are still failing, but Neil will be checking into those, so the branch can be fully functional again. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22062] Purpose: Fix bugs in chunk cache's SWMR implementationNeil Fortner2012-03-131-0/+1
| | | | | | | | | | | | | | | | | | | | | Description: Two issues were found with the chunk cache's SWMR implementation: 1. Some places were not properly setting the rdcc field in the index udata struct. Fixed. May eventually need to add an rdcc field to the idx_info struct. 2. While recalculating the indices for chunks in a dataset being resized, it was possible for the chunk cache to attempt to flush a chunk before all the indices were updated, which caused problems when a node split and flush dependencies needed to be updated, because the child nodes could not be found in the chunk cache due to the index being out of date. Modified algorithm in H5D_chunk_update_cache to keep a temporary list of entries that got "bumped", and only evict them after all chunks have updated indices. Also modified H5D_chunk_update_flush_dep and H5D_chunk_update_flush_dep to search this temporary list when looking for the child chunk entry. As a side effect, chunks are now more likely to remain in cache after a call to H5Dset_extent (even without SWMR), so performance should improve slightly.
* [svn-r19413] Description:Quincey Koziol2010-09-171-3/+3
| | | | | | | | | | | | | | | | | | | | | | Bring r19349:19411 from trunk to revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19267] Modifications to use Fixed Array Indexing for extendible ↵Vailin Choi2010-08-201-8/+35
| | | | | | chunked dataset (fixed max. dim. setting but exclude H5S_UNLIMITED)
* [svn-r19004] Purpose:Mike McGreevy2010-06-151-0/+6
| | | | | | | | | | | | | | | | | | | | | | | Commit metadata tagging framework. Description: This check-in contains a new framework whose goal is to apply a tag value to each new entry in the metadata cache as it is created. This tag value is such that it relates each piece of metadata to the HDF5 object that it belongs to (dataset, group, et cetera). This changeset includes the framework that applies the tags as well as a suite of tests to verify correct tag application, though does not yet make use of the tag values to flush/evict individual objects. Please refer to the "flush/evict individual objects" RFC for further discussion of these changes. Tested: jam, amani, linew (h5committest) liberty, abe, blue print
* [svn-r17896] Description:Quincey Koziol2009-11-161-4/+7
| | | | | | | | | | | | | | | | | | | | | | | | Bring r17546:17895 from trunk to revise_chunks branch. Changes to fixed and extensible array dataset chunk indexing code to accommodate changes to private APIs in those interfaces. Also, other adjustments to source code and expected output in response to changes on the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17522] Description:Quincey Koziol2009-09-241-7/+121
| | | | | | | | | | Bring in the rest of Vailin's changes for testing fixed array chunk indices, across the range of range of all the tools and the appropriate dataset tests. Tested on: Mac OS X/32 10.5.8 (amazon) w/debug & production (h5committest not required for this branch)
* [svn-r17278] Description:Quincey Koziol2009-07-301-88/+97
| | | | | | | | Bring r17272:17276 from trunk to revise_chunks branch. tested on: FreeBSD/32 6.3 (duty) h5committest not required on this branch
* [svn-r17267] Description:Quincey Koziol2009-07-301-17/+17
| | | | | | | | | | | | | | | | | | | | | Bring r17262:17265 from trunk to revise_chunks brach. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17263] Description:Quincey Koziol2009-07-291-17/+17
| | | | | | | | | Bring r17244:17262 from trunk to revise_chunks branch Tested on: Mac OS X/32 10.5.7 (amazon) w/debug & production FreeBSD/32 6.3 (duty) w/debug h5committest not needed on this branch
* [svn-r17240] Description:Quincey Koziol2009-07-271-4/+2
| | | | | | | | | | | | | | | | | | | | | | Interim checkin, before switching to use layout index message for storing layout message v4 chunk index addresses. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17233] Description:Quincey Koziol2009-07-231-0/+1
| | | | | | | | Bring r17209:17230 from trunk to revise_chunks branch. Tested on: Mac OS X/32 10.5.7 (amazon) debug h5committest not required on this branch
* [svn-r17156] Description:Quincey Koziol2009-07-031-0/+1554
Hook fixed array data structure up to dataset code as a chunk index when there are 0 unlimited dimensions. Tested on: Mac OS X/32 10.5.7 (amazon) (h5committest not required on this branch)
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