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* VFD SWMR: Merges from develop (#1670)Dana Robinson2022-04-211-30/+30
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Cleans up SWMR test scripts (both legacy and VFD) * Brings over format source changes for Java * Normalization of HL, Fortran, C++, Java w/ develop * Removes the STATIC flavor of FUNC_ENTER macros (#1622) * Removes the STATIC flavor of FUNC_ENTER macros * Remove H5_NO_ALIGNMENT_RESTRICTIONS (#1426) * Do not conditionally compile code that uses a pointer dereference and assignment to copy a potentially unaligned variable to aligned automatic storage, or vice versa. Instead, always use naked `memcpy(3)`s. Disassembling the generated code reveals that the `memcpy(3)`s optimize (`-O3`) to a single `mov` instruction for x86_64, which is not strict about alignment. This change reduces the size of code and scripts by 143 lines, eases our way to cross-compilation, and avoids invoking undefined behavior. * Committing clang-format changes * Per discussion, use HD and add comments. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes unused definitions from module headers (#1624) * Misc stuff from develop (includes some parallel things) * Brings over SWMR test quiet mode changes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* VFD SWMR: normalization with develop (#1472)Dana Robinson2022-03-061-1/+1
| | | Much normalization with develop. Still needs tools changes wrt VFD plugins.
* Misc normalization from developDana Robinson2021-05-071-6/+6
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* Updates license url and history docsDana Robinson2021-03-251-1/+1
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* Formats the source and updates the gcc warning pragmasDana Robinson2021-03-251-324/+289
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* Adding the test case for fixed-array chunked dataset and VDS.songyulu2021-02-121-1/+1
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* Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmrDavid Young2020-08-041-193/+193
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| * Minor changes from normalization with 1.10Dana Robinson2020-07-091-90/+90
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| * Normalization with hdf5_1_10Dana Robinson2020-06-011-103/+103
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| * Trim trailing whitespaceQuincey Koziol2020-04-201-5/+5
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| * C and POSIX call cleanupDana Robinson2019-01-111-2/+2
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* | Avoid leaving a v1 B-tree used as a chunk index in a bad stateDavid Young2020-06-121-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | that makes assertions fail. Add an optional `close` method to the `H5D_chunk_ops_t`, and use that to release "holds" on metadata cache (MDC) entries. For extensible arrays and v2 B-trees, use the existing `dest`(roy) method to implement `close`. For v1 B-trees and other chunk indices, don't provide `close`: we cannot safely close the v1 B-tree index, and the other indices don't have a meaningful presence in the MDC. Revert my first attempt at making v1 B-tree chunk indices closeable with `dest`. Put my comment about the stopgap fix for VFD SWMR at the right place in src/H5Dchunk.c.
* | Trim trailing whitespaceQuincey Koziol2020-05-201-5/+5
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* | Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,David Young2019-12-091-2/+2
|/ | | | | | | | including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and I share. Now I need to put this branch on a fork with a less confusing name than vchoi_fork!
* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-48/+34
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* Revert "Merge pull request #567 in HDFFV/hdf5 from ↵Dana Robinson2017-06-091-11/+3
| | | | | | | ~DEROBINS/hdf5_der:develop to develop" This reverts commit 4242753848c44ab3b5d226e66225eac2f64db314, reversing changes made to b0e79fe6dd20ec7aa1b3e5f0f8b370639a4ef5bd.
* * Made STATIC free lists EXTERN for H5O_layout_t.Dana Robinson2017-06-071-1/+1
| | | | * Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
* Updated H5O_layout_t dynamic work to use the H5FL interface.Dana Robinson2017-06-071-3/+5
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* Made some H5O_layout_t stack allocations dynamic (quiets warnings).Dana Robinson2017-06-061-3/+9
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-8/+86
| | | | and the tool and API wrappers will be coming in over the weekend.
* Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-261-2/+2
| | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
* Code style and warning cleanups, from revise_chunks branch.Quincey Koziol2016-11-061-1/+1
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* [svn-r29976] Description:Quincey Koziol2016-05-301-53/+18
| | | | | | | | | | Bring over remaining piece of r29675 from revise_chunks branch: Refactor coding in H5D__farray_idx_delete() to be similar to H5D__earray_idx_delete() Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29776] Description:Quincey Koziol2016-04-241-1/+9
| | | | | | | | Bring "file pointer patching" code & test from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29717] Description:Quincey Koziol2016-04-161-1/+1
| | | | | | | | | | Correct chunk index computation for earrays and farrays, particularly when copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size) that require iterating over all chunks. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29659] Added fixed array chunk indexing from revise_chunks.Dana Robinson2016-04-071-0/+1638
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
generated by cgit v0.12 at 2024-09-18 17:21:48 (GMT)