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* Merge branch 'hdf5_1_10' of ↵Jacob Smith2018-12-311-131/+22
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize_105
| * Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-12-311-131/+22
| | | | | | | | orginally intended to support the full SWMR feature (from develop).
* | Incoporate minimized dataset headers code and tests.Jacob Smith2018-12-311-6/+227
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* Combined macro lines as Dana commentedBinh-Minh Ribler2018-07-261-2/+1
| | | | | Platforms tested: Linux/64 (jelly) (very minor)
* Fixed division-by-zero issuesBinh-Minh Ribler2018-07-261-16/+21
| | | | | | | | | | | Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* Fixed HDFFV-10404Binh-Minh Ribler2018-07-261-2/+2
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-359/+361
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-963/+822
| |\ | | | | | | | | | merge_hyperslab_updates
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-70/+92
| | |\ | | | | | | | | | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| | | * Modifications made based on comments from pull request.Vailin Choi2018-02-071-0/+1
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| | | * Merge branch develop into bugfix/version_boundsVailin Choi2018-01-121-24/+54
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| | | * | Changes made based on code reviews.Vailin Choi2018-01-121-10/+15
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| | | * | (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-251-497/+325
| | | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
| | | * | | Initial checkin for library version boundsVailin Choi2017-10-031-46/+31
| | | | | | | | | | | | | | | | | | | | | | | | Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
| | * | | | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-363/+364
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| * | | | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-281-5/+5
| | | | | | | | | | | | | | | | | | | | improvements.
* | | | | Needs to sync with lib version and Sencode.M. Scot Breitenfeld2018-03-071-47/+38
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* | | | | synced with developM. Scot Breitenfeld2018-01-051-24/+54
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| * | | | HDFFV-9724 Corrected files and verified testsAllen Byrne2017-12-281-24/+54
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| * | | | Revert "Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to ↵lrknox2017-12-221-54/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop" This reverts commit b1223dd653e65e076af92b2dfe236f3704da81c8, reversing changes made to b25f123f5f5e25c1447a6a02861cb7c7265c12f2.
| * | | | HDFFV-9724 combine efc and vds into one functionAllen Byrne2017-12-131-101/+30
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| * | | | HDFFV-9724 Initial changes and testAllen Byrne2017-12-111-0/+101
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* | | | Fix for daily test failures.Vailin Choi2017-12-071-1/+1
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* | | Remove tabsAllen Byrne2017-11-081-516/+344
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* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Jordan Henderson2017-08-111-3/+11
|\ \ | | | | | | | | | develop
| * | Fix for HDFFV-10217 infinite loop in H5VM_power2up().Vailin Choi2017-07-101-3/+11
| | | | | | | | | | | | | | | | | | The function H5VM_power2up() returns the next power of 2 for n. When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping. The fix ensures that the function checks for n >= 2^63 and returns 0.
* | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-07-051-103/+107
|\ \ \ | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '6428a637752753cc8a9007c0c3c38b9ea9cc97fd': (165 commits) Skip HDFFV-10160 filenotclosed test for split/multi driver Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting More minor whitespace cleanup Fixed a minor comment typo in H5R.c * Reverted removal of H5I_REFERENCE to avoid breaking binary compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c. Added missing free() call to test_misc19(). Purged the unused H5I_REFERENCE from the library. Added a test for VFD IDs to testhdf5. Revert "Partial removal of NDEBUG ifdefs from the library." Partial removal of NDEBUG ifdefs from the library. Removed compiler flag cleanup since Solaris chokes on it. Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file. Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true. Updated the --enable-debug/production handling in configure.ac so that it more reliably indicates that the configure option can no longer be used. Previously, using --enable-debug="", etc. would not trigger an error (even though such usage is unlikely). Added awk processing to remove extraneous whitespace from H5_ flags in configure. Fixed a comment in configure.ac HDFFV-10219 another mode change HDFFV-10219 change subset to use BINARY mode for h5dump HDFFV-10219 default input binary to NATIVE Set default of var to NATIVE HDFFV-10219 - disable h5dump tests until h5import NATIVE is fixed ...
| * | Revert "Merge pull request #567 in HDFFV/hdf5 from ↵Dana Robinson2017-06-091-24/+16
| | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop to develop" This reverts commit 4242753848c44ab3b5d226e66225eac2f64db314, reversing changes made to b0e79fe6dd20ec7aa1b3e5f0f8b370639a4ef5bd.
| * | * Made STATIC free lists EXTERN for H5O_layout_t.Dana Robinson2017-06-071-1/+1
| | | | | | | | | | | | * Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
| * | Updated H5O_layout_t dynamic work to use the H5FL interface.Dana Robinson2017-06-071-2/+5
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| * | Made some H5O_layout_t stack allocations dynamic (quiets warnings).Dana Robinson2017-06-061-16/+21
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| * | Fixed many minor warnings.Dana Robinson2017-05-251-97/+103
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| * | Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| |/ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* | Merge pull request #2 in ~JHENDERSON/hdf5 from HDFFV/hdf5:develop to ↵Jordan Henderson2017-03-101-3/+2
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | feature/parallel_filters * commit '56e5b4ed05fb3bad51c226ec5b567871a45e0bce': (112 commits) updated AM_SILENT_RULES syntax Added a check for AM_SILENT_RULES before enabling it. Fix alignment Fix vds tests Correct result code for strings test Add extension to filename HDFFV-10128 fix string compare and add tests Description: Only format changes: mostly tabs vs. spaces Platforms tested: Linux/64 (jelly) - very minor Lowercase math and set CMake commands Added "flush" and "refresh" to testflushrefresh.sh error output so it's easier to see where errors in the script occur. Misc. small cleanups to sync against incoming page buffering changes. Update CMake formatting Update CMake files and formatting Normalize against incoming page buffering changes. HDFFV-10120 verify nozlib checking with tools tests cmake non-code typo Correct issues from pull request reviews. Corrected version of 4b5e05c084f93c35dae946c2c9e814d565a613b0: Fix some more signed -> unsigned value issues with cache data structures, also misc. style cleanups. All to align w/incoming page_buffering changes. Revert "Fix some more signed -> unsigned value issues with cache data structures, also" Added virtual to list ...
| * Update sanity checks for dataset refresh code.Quincey Koziol2017-01-311-3/+2
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* | Switch working branch from master to developJordan Henderson2017-01-131-4/+0
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* Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-261-5/+6
| | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
* Added the H5F_CLOSING() check that makes valgrind happy inDana Robinson2016-11-211-1/+1
| | | | the evict-on-close code in H5G_close() to H5D_close().
* - Removed BRANCH.txt and MANIFEST entryDana Robinson2016-09-301-0/+1
| | | | - Fixed a missing line in H5Dint.c
* - Removed non-implemented code from H5Gint.cDana Robinson2016-09-301-8/+0
| | | | | - Removed commented-out debug code from H5Dint.c - Added blank lines to eliminate delta in a fortran file.
* Merge branch 'develop' into evict_on_closeDana Robinson2016-09-141-0/+5
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| * [svn-r30143] Fix for HDFFV-9940.Vailin Choi2016-07-041-0/+5
| | | | | | | | Tested on jam, osx1010test, moohan, platypus, emu, kite, kituo, mayll, ostrich, quail.
* | [svn-r30108] Moved group flush and evict code to H5G_close from H5Gclose.Dana Robinson2016-06-261-1/+1
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* | [svn-r30107] Moved dataset flush and evict code to H5D_close from H5Dclose.Dana Robinson2016-06-251-14/+30
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* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+187
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r30068] Description:Quincey Koziol2016-06-131-0/+8
| | | | | | | | Bring metadata cache corking to trunk. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29969] Description:Quincey Koziol2016-05-291-24/+55
| | | | | | | | | | | Bring r29934 from revise_chunks branch to trunk: (1) Fix for HDFFV-9434: throw an error instead of assertion when v1 btree level hits the 1 byte limit. (2) Modifications to better handle error recovery when conversion by h5format_convert fails. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29924] Description:Quincey Koziol2016-05-121-0/+120
| | | | | | | | Bring h5format_convert tool from revise_chunks branch to trunk. Tested on: MacoSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29884] VDS correction for get_space_status, with test change.Allen Byrne2016-05-041-32/+40
| | | | | Add new files for repack tests. Add repack tests for VDS files.
* [svn-r29850] Description:Quincey Koziol2016-05-011-12/+99
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
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