| Commit message (Collapse) | Author | Age | Files | Lines |
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Description:
Updated the original fix by Kent Y. in commit
200a77d8c3e51663c375aafffff607ae9b438f4e
- used internal functions instead of public API
- moved some code into the subroutine for a cleaner look.
- added test to dsets.c
Platforms tested:
Linux/64 (jelly)
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their header about this naming
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header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
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the dataset is extended.
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~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop
* commit 'afdcac28b85d690eebc80ab568fa5266081baaaa':
A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. This is triggered by the tests for revised references when the libver bounds setting does not allow version 4 datatype message to be created. The test failure is abort core dumped. This is due to the datatype initialization fails before the datatype ID is registered. The datatype cleanup code should provide for the above situation. The code to fix the problem is the same as what is done in H5D__open_oid().
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H5D__init_type() fails.
This is triggered by the tests for revised references when the libver bounds setting does not allow version
4 datatype message to be created. The test failure is abort core dumped.
This is due to the datatype initialization fails before the datatype ID is registered.
The datatype cleanup code should provide for the above situation.
The code to fix the problem is the same as what is done in H5D__open_oid().
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H5I_INVALID_HID.
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Merged per discussion with Elena.
* commit '3f903a441ad84001ea66589728bd8b036b6fdfca':
Take out the temporary performance tests.
Make calls through a function pointer. Use the same number of arguments, always.
Increase iterations, provide a baseline for no-op, simplify the overhead case a bit.
Temporarily add some code that measures the time to run the simplest possible H5T__copy_all()-like routine 10 million times and then measures the version with FUNC_ENTER_STATIC/_LEAVE_NOAPI and a HGOTO_ERROR() statement.
H5T_copy() constification plus Quincey's contributions.
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Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
shadowed declaration warnings about index(3).
Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
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generic fallback for VOL connectors that don't implement operation
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of the va_list, so it's at least possible for another connector to know what
the operation is and decide whether to implement it or not.
Added a new VOL sub-class called "introspect" where callbacks that report
information about the connector or container can be placed. Added an
'opt_query' callback to this sub-class, for a connector to report back
to the library whether a particular optional callback operation is supported.
Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t
of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or
the terminal connector, H5VL_GET_CONN_LVL_TERM).
Moved the "post open" operation from a file 'specific' operation to a file
'optional' operation, now that it's possible to detect (with the 'opt_query'
introspection callback) whether a VOL connector implements an optional
operation, without just returning an error.
Added new internal VOL helper routines: H5VL_object_is_native, to determine
if an object is in (or is a) native file, and H5VL_file_is_same, to determine
if two objects are in (or are) the same terminal VOL connector's container.
(And moved the special handling for FILE_IS_EQUAL operation out of internal VOL
callback routine into H5VL_file_is_same)
Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better
with other 'get' operations in API.
Fixed several issues with pass-through connectors, which are now passing the
'make check-passthrough-vol' tests again.
A bunch of warning and style cleanups as well.
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non-native VOL connectors.
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to develop
* commit '3664cea5d6f87a7e8e708191f9cea36077424a80':
Fix failing test and retain semantics for chunk cache properties in non-chunked datasets
Add two missing calls to H5I_dec_ref for new dapl_id
Community-proposed fix
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non-chunked datasets
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location set to be in a file. Only meant to be used by VOL connectors.
Implement H5VLpeek_connector_id() to support connectors querying their
own IDs. Fix app_ref with connector IDs in a couple places (external
VOLs registered as default through ENV should be visible to the
application). Modify vlen and reference interfaces to work with
arbitrary VOL connectors. Implement file "post open" specific
callback, to enable connectors to update their file structs after a
wrap context has been set.
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Also support references to external files
Add new H5T_REF type and type conversion routines
Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF
Add H5Treclaim() API to reclaim memory of vlen/reference types
Deprecate H5Dvlen_reclaim()
Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback
Add H5T_ref_reclaim()
Move previous H5R APIs to H5Rdeprec.c
Clean up H5Ocopy
Separate H5O_copy_expand_ref() to H5Ocopy_ref()
Add support for copying new reference types
Clean up deprecated routines to go through VOL and same code path
Fix return codes in existing trefer.c test
Rename trefer.c to trefer_deprec.c
trefer.c is for new references
Add performance test for trefer
Add additional obj_copy_ref test
Make use of tokens and blobs to store references
Skip blob encoding for object references
Start adding new reference examples
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instead of the 'top' file pointer.
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changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
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that is passed in as the object ID.
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clean up warnings.
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~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop
* commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits)
Moving the handling of null prefix into H5_combine_path.
Changing the prefix of external file and VDS from empty string to null for performance improvement.
Improving the condition checking of empty string.
Replacing string operation strdup with assignment for empty string.
Adding back links_env.out which I accidentally removed in my previous commit.
Taking out two unnecessary diff output files.
Taking out unnecessary diff files for output.
Adding some comments.
Some coding style changes.
Adding the standard output files for the external_env.c and vds_env.c tests.
Small correction for my previous commit.
Forgot to add external_common.c and external_common.h.
Updated CMake for the splitting of external.c and vds.c.
Minor fix: removal of unnecessary enum values.
Minor fixes: updating the test vds_env.c according to the set up of vds.c.
Left out this file in previous commit.
HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
HDFFV-10658: I left out this file in my previous commit.
HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work.
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performance improvement.
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1. switched to use the existing H5F_prefix_open_t for enum type;
2. put the common private function used by external.c and external_env.c into external_common.c
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https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
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1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties.
2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables.
3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
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the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work.
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1. external file prefix and VDS prefix.
2. the datatype, dataspace, and LCPL of the dataset for VOL connector.
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instead of # of allocated sub-datasets.
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cache. Fix issues involving datasets being "no allocated" when they
contain cached raw data.
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Formatting, informative comments, and minor renaming.
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Update printf->HDprintf statements.
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