summaryrefslogtreecommitdiffstats
path: root/src/H5Dint.c
Commit message (Collapse)AuthorAgeFilesLines
* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-55/+218
|\
| * [svn-r29635] Description:Quincey Koziol2016-04-051-0/+5
| | | | | | | | | | | | | | | | | | Bring support for earray and v2 B-trees from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29612] Description:Quincey Koziol2016-04-031-21/+26
| | | | | | | | | | | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29607] Description:Quincey Koziol2016-04-021-5/+13
| | | | | | | | | | | | | | | | | | Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
| * [svn-r29421] Fix for HDFFV-9516.Dana Robinson2016-03-151-0/+12
| | | | | | | | | | | | | | | | Corrects a problem where H5Dget_access_plist() returns a dapl that does not contain all dapl fields. Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial
| * [svn-r29202] Fix for unknown message HDFFV-9697.Vailin Choi2016-02-241-2/+8
| | | | | | | | Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
| * [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-221-2/+111
| | | | | | | | | | | | | | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
| * [svn-r29084] Revert of:Dana Robinson2016-02-111-111/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | r29069 and 72 (gheap cleanup) r29041 and 43 (HDFFV-8740 external storage) These cause problems in the daily tests. They will be re-introduced when their respective problems have been addressed. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (check-vfd) w/ Fortran and C++ autotools parallel w/ Fortran CMake serial
| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-5/+5
| | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-20/+33
| | | | | | | | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
| * [svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵Dana Robinson2016-02-041-2/+111
| | | | | | | | | | | | | | | | | | | | | | specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
| * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-4/+4
| | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * [svn-r28723] Description:Quincey Koziol2015-12-221-0/+5
| | | | | | | | | | | | | | | | | | Bring over rest of performance improvements for extending chunked datasets and normalize against revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel) (h5committest forthcoming)
* | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-51/+42
|\ \ | |/ | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-141-7/+5
| | | | | | | | | | | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
| * [svn-r28606] Description:Quincey Koziol2015-12-131-43/+36
| | | | | | | | | | | | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28452] Description:Quincey Koziol2015-11-231-2/+2
| | | | | | | | | | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27972] merge from trunk.Mohamad Chaarawi2015-10-061-39/+99
|\ \ | |/
| * [svn-r27946] Brought VDS branch in sync with trunk (up to r27945).Dana Robinson2015-10-041-37/+11
| |\ | | | | | | | | | | | | | | | | | | | | | Tested on Ubuntu 15.04 (Linux 3.19 x86_64), gcc 4.9.2, MPICH 3.1.4 and CMake 3.3.2. - Autotools serial w/ Fortran, C++ - Autotools parallel w/ Fortran - CMake serial w/ Fortran, C++
| | * [svn-r27939] Remove H5D__iterate and use H5S_select_iterate directlyJerome Soumagne2015-10-021-37/+11
| | | | | | | | | | | | | | | Add internal library callback to H5S_select_iterate to avoid having to pass hid_t objects internally
| * | [svn-r27835] Description:Quincey Koziol2015-09-211-82/+206
| |\ \ | | |/ | | | | | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * | [svn-r27630] Description:Quincey Koziol2015-08-311-47/+56
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring in changes from the trunk, through r27628. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
| * | | [svn-r27538] Add tests to cover remaining code coverage assertions in src ↵Neil Fortner2015-08-201-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | directory except for those in H5Doh.c and H5Shyper.c. Tested: ummon
| * | | [svn-r27505] Add support for H5Dset_extent for VDS.Neil Fortner2015-08-141-4/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Add tests for this. Other bug fixes/cleanup Tested: Kubuntu 64 (home computer)
| * | | [svn-r27504] Change comments/code around to reflect decision to have virtual ↵Neil Fortner2015-08-131-3/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | datasets always return TRUE when their is_alloc function is called. Tested: ummon
| * | | [svn-r27323] Implement support for H5Dflush for VDS.Neil Fortner2015-07-021-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Implement support for H5Ocopy on VDS. Testing for H5Ocopy on VDS. Fix check-vfd failure. Other minor fixes/cleanup. Note there is a preexisting failure in h5repack testing. Tested: ummon
| * | | [svn-r27191] Merged r26781 to r27185 from trunkDana Robinson2015-06-111-3/+3
| |\ \ \ | | | | | | | | | | | | | | | | | | | | Tested on: 64-bit Ubuntu Linux VM w/ gcc 4.8.2 (C++ and Fortran 2003 also tested)
| * | | | [svn-r27145] Add some testing for printf-style source dataset name resolution.Neil Fortner2015-06-031-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Various bug fixes, including a temporary fix for printf with FIRST_MISSING view. Other cleanup. Tested: ummon
| * | | | [svn-r27104] Add support for printf-style source dataset name resolution.Neil Fortner2015-05-221-6/+19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Passes use case test, no regression tests yet. Add functions H5Pset/get_virtual_printf_gap (not tested yet). Other minor fixes/cleanup. Tested: ummon
| * | | | [svn-r27103] Merge revisions 26780 through 27102 from trunk to vds branch.Neil Fortner2015-05-211-19/+99
| |\ \ \ \ | | | | | | | | | | | | | | | | | | Tested: ummon
| * | | | | [svn-r27022] Add new functions H5Pset_virtual_dataspace_bounds andNeil Fortner2015-05-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | H5Pget_virtual_dataspace_bounds. Minor refactor of dataset initialization code to make this cleaner. Update h5_vds-percival-unlim-maxmin.c Other minor fixes/cleanup. Tested: ummon
| * | | | | [svn-r26962] Add support for unlimited selections to VDS code.Neil Fortner2015-04-291-0/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Not tested (except for percival-unlim example) Fix percival-unlim example Other bug fixes/cleanup Tested: Fedora 64
| * | | | | [svn-r26862] Fix bug in H5D__get_storage_size where it would issue an error ↵Neil Fortner2015-04-211-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | unnecessarily for virtual datasets. Tested: ummon
| * | | | | [svn-r26411] Add support for I/O in very simple cases (virtual mapping and ↵Neil Fortner2015-03-091-2/+78
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | file space are both H5S_ALL). Note make check fails in h5dump test (unrelated to this checkin). Tested: ummon
| * | | | | [svn-r26296] Merge r26050 through 26295 from trunk to vds branch.Neil Fortner2015-02-241-12/+16
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | Tested: ummon
| * | | | | | [svn-r26261] Commit working but incomplete prototype. Does not perform I/O.Neil Fortner2015-02-201-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Tested: ummon
| * | | | | | [svn-r26198] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-171-1/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Commit progress through 1610 CST 2/17/15
* | | | | | | [svn-r27959] - merge from trunk (pre-VDS)Mohamad Chaarawi2015-10-051-42/+128
|\ \ \ \ \ \ \ | | |_|_|_|_|/ | |/| | | | | | | | | | | | - fix VOL initialization and Native plugin registration with new FAPL changes
| * | | | | | [svn-r27811] Description:Quincey Koziol2015-09-161-42/+128
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* | | | | | | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-84/+190
|\ \ \ \ \ \ \ | |/ / / / / /
| * | | | | | [svn-r27768] Description:Quincey Koziol2015-09-141-40/+73
| | |_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
| * | | | | [svn-r27618] Description:Quincey Koziol2015-08-291-2/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Align w/vds branch: Remove extraneous sieve buffer flush in chunk flush callback, and move error check out of the middle of retrieving properties for dataset. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest forthcoming)
| * | | | | [svn-r27615] Description:Quincey Koziol2015-08-291-40/+47
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Protect dataset that's closing from being flushed again, if it's the last one holding a file open. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest forthcoming)
| * | | | | [svn-r27612] Description:Quincey Koziol2015-08-291-3/+67
| | |_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Align w/vds branch: Whitespace cleanup, move common code for opening a dataset into a new routine, misc. style cleanups. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest upcoming)
* | | | | [svn-r27141] merge from trunk.Mohamad Chaarawi2015-06-031-3/+3
|\ \ \ \ \ | |/ / / /
| * | | | [svn-r27133] - Add a new attribute function characterstic for format:Mohamad Chaarawi2015-06-011-3/+3
| | |_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | * H5_ATTR_FORMAT(X,Y,Z) __attribute__((format(X, Y, Z))) - Rename UNUSED attribute characterstic to H5_ATTR_UNUSED. - Rename NORETURN attribute characterstic to H5_ATTR_NORETURN tested with h5committest.
* | | | [svn-r27090] merge from trunk.Mohamad Chaarawi2015-05-151-2/+40
|\ \ \ \ | |/ / /
| * | | [svn-r27058] Description:Quincey Koziol2015-05-131-2/+40
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Convert internal chunk structures to use 'scaled' coordinates instead of absolute coordinates. Tested on: Mac OSX/64 10.10.3 (amazon) w/parallel & serial Linux 2.6.x/32 (jam) w/parallel & serial Linux 2.6.x/64 (koala) w/serial
* | | | [svn-r27050] merge from trunk.Mohamad Chaarawi2015-05-111-17/+59
|\ \ \ \ | |/ / /
| * | | [svn-r26993] Description:Quincey Koziol2015-05-021-2/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Align w/incoming chunk performance changes, including some small performance improvements here, as well as a few minor general code cleanups. Tested on: Mac OSX/64 10.10.3 (amazon) w/serial & parallel (Too minor to require h5committest)
generated by cgit v0.12 at 2024-07-24 03:36:09 (GMT)