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* Repair more format strings.David Young2020-09-261-5/+5
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* Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-19/+19
| | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* Minor changes from normalization with 1.10Dana Robinson2020-07-091-1/+1
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* Trim trailing whitespaceQuincey Koziol2020-04-201-23/+23
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* squash cast warning fixkmu2020-01-231-20/+16
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* Progress toward moving the dataset routines to using the 'shared' file pointerQuincey Koziol2019-08-211-3/+3
| | | | instead of the 'top' file pointer.
* Fixed some low-hanging fruit from -fsanitize in t_filters_parallel.Dana Robinson2019-06-211-2/+3
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* Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-04-291-0/+3
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| * HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-061-0/+3
| | | | | | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* | Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01Quincey Koziol2019-03-171-10/+10
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| * Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-10/+10
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* | Core changes to selection code from the hyperslab_updates branch.Quincey Koziol2019-03-161-11/+11
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* More changes to align with incoming selection improvements.Quincey Koziol2019-02-141-2/+2
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* Align develop with incoming hyperslab_updates branch changes.Quincey Koziol2019-02-131-36/+36
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* Fix some collective metadata read issuesJordan Henderson2019-02-121-1/+5
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* HDFFV-10625 -- Implemented a process-0 read and then broadcast for ↵Quincey Koziol2019-01-071-25/+90
| | | | collective read of full (HS_ALL), contiguous, atomic datasets by all the processes in the file communicator.
* Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-241-2/+1
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* Remove now-unused local variableJordan Henderson2018-08-261-3/+0
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* Add fix for HDFFV-10501Jordan Henderson2018-08-261-14/+1
| | | | | Add test for HDFFV-10501 fix Add release note for HDFFV-10501 fix
* Add configure check for MPI_Mprobe and MPI_Imrecv functionsJordan Henderson2018-07-261-0/+24
| | | | | | | | | | | | | | | Add line to libhdf5settings file for status of Parallel writes to filtered datasets status Surround Parallel Compression code in MPI_VERSION >= 3 checks Add disabled message for Parallel Compression built w/ MPI-2 Modify Parallel Compression tests to only run the parallel filtered read tests when parallel filtered writes are disabled Update big I/O code to handle being built with MPI-2 Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
* Merge pull request #1127 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2018-07-161-51/+98
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a8d6f100cdddbfc42d0c4abfeb4ceb8788b1b087': Add note about single chunk caching and serial library Add check for actually using the MPI file driver when caching one chunk Fix error message mentioning wrong MPI function used Fix for HDFFV-10509 Revise H5D__mpio_array_gatherv() to not allocate memory needlessly Add test to continually grow and shrink chunks Changes to test with checksum filter as well as deflate filter Eliminate warning about signed to unsigned conversion Remove unused local variable Fix bug in parallel reads of compressed data Add data verification to parallel filtered compound write tests Add seven of fourteen parallel filtered data partial read tests
| * Fix error message mentioning wrong MPI function usedJordan Henderson2018-07-131-1/+1
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| * Revise H5D__mpio_array_gatherv() to not allocate memory needlesslyJordan Henderson2018-06-061-38/+61
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| * Eliminate warning about signed to unsigned conversionJordan Henderson2018-05-171-4/+4
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| * Remove unused local variableJordan Henderson2018-05-171-7/+4
| | | | | | Ensure frees are done in a more heap-fragmentation friendly order
| * Fix bug in parallel reads of compressed dataJordan Henderson2018-05-171-7/+34
| | | | | | Add remaining parallel compound dataset partial read tests
* | Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-2/+2
| | | | | | | | | | | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* | Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-6/+2
| | | | | | | | | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-356/+145
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-309/+1663
| |\ | | | | | | | | | merge_hyperslab_updates
| | * Corrections for parallel I/O & tests.Quincey Koziol2018-03-211-46/+23
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| | * Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-310/+122
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| * | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-281-1/+1
| | | | | | | | | | | | improvements.
* | | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-2/+6
| |/ |/| | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
* | Revert malloc's back to using hard-coded type for sizeofJordan Henderson2017-09-011-23/+23
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* | Minor comment refactoringJordan Henderson2017-09-011-3/+4
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* | Update documentationJordan Henderson2017-08-311-39/+158
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* | Fix bug where incorrect amount of data was being read from the fileJordan Henderson2017-08-101-1/+1
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* | Suggested changes from code reviewJordan Henderson2017-07-071-2/+1
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* | Amend header comment errorJordan Henderson2017-07-061-19/+18
| | | | | | Suggested fix for allocating too small of a buffer for the chunk data
* | Clean up remaining warningsJordan Henderson2017-07-061-6/+21
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* | Add prototype for H5D__cmp_filtered_collective_io_info_entry_ownerJordan Henderson2017-07-051-0/+2
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* | Add comment for memory copy possibly not being necessary anymore forJordan Henderson2017-07-051-0/+1
| | | | | | Multi-Chunk I/O
* | Remove use of H5E_CANTDISTRIBUTE errorJordan Henderson2017-07-051-1/+1
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* | Add comment for full overwrite special caseJordan Henderson2017-07-051-0/+8
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* | Add remaining documentation/commentsJordan Henderson2017-07-051-23/+54
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-07-051-6/+4
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '6428a637752753cc8a9007c0c3c38b9ea9cc97fd': (165 commits) Skip HDFFV-10160 filenotclosed test for split/multi driver Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting More minor whitespace cleanup Fixed a minor comment typo in H5R.c * Reverted removal of H5I_REFERENCE to avoid breaking binary compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c. Added missing free() call to test_misc19(). Purged the unused H5I_REFERENCE from the library. Added a test for VFD IDs to testhdf5. Revert "Partial removal of NDEBUG ifdefs from the library." Partial removal of NDEBUG ifdefs from the library. Removed compiler flag cleanup since Solaris chokes on it. Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file. Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true. Updated the --enable-debug/production handling in configure.ac so that it more reliably indicates that the configure option can no longer be used. Previously, using --enable-debug="", etc. would not trigger an error (even though such usage is unlikely). Added awk processing to remove extraneous whitespace from H5_ flags in configure. Fixed a comment in configure.ac HDFFV-10219 another mode change HDFFV-10219 change subset to use BINARY mode for h5dump HDFFV-10219 default input binary to NATIVE Set default of var to NATIVE HDFFV-10219 - disable h5dump tests until h5import NATIVE is fixed ...
| * | Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| |/ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* | Revise shared chunks redistribution algorithmJordan Henderson2017-05-011-23/+25
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* | Separate shared chunks redistribution code out to its own functionJordan Henderson2017-05-011-207/+245
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