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* Add configure check for MPI_Mprobe and MPI_Imrecv functionsJordan Henderson2018-08-021-0/+24
| | | | | | | | | | | | | | | Add line to libhdf5settings file for status of Parallel writes to filtered datasets status Surround Parallel Compression code in MPI_VERSION >= 3 checks Add disabled message for Parallel Compression built w/ MPI-2 Modify Parallel Compression tests to only run the parallel filtered read tests when parallel filtered writes are disabled Update big I/O code to handle being built with MPI-2 Add checks to CMakeLists.txt for MPI_Mprobe and MPI_Imrecv
* Revise H5D__mpio_array_gatherv() to not allocate memory needlesslyJordan Henderson2018-07-271-38/+61
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* Eliminate warning about signed to unsigned conversionJordan Henderson2018-07-271-4/+4
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* Remove unused local variableJordan Henderson2018-07-271-7/+4
| | | Ensure frees are done in a more heap-fragmentation friendly order
* Fix bug in parallel reads of compressed dataJordan Henderson2018-07-271-7/+34
| | | Add remaining parallel compound dataset partial read tests
* Fixed HDFFV-10404Binh-Minh Ribler2018-07-261-2/+2
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Fix error message mentioning wrong MPI function usedJordan Henderson2018-07-261-1/+1
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* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-356/+145
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-309/+1663
| |\ | | | | | | | | | merge_hyperslab_updates
| | * Corrections for parallel I/O & tests.Quincey Koziol2018-03-211-46/+23
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| | * Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-310/+122
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| * | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-281-1/+1
| | | | | | | | | | | | improvements.
* | | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-2/+6
| |/ |/| | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
* | Revert malloc's back to using hard-coded type for sizeofJordan Henderson2017-09-011-23/+23
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* | Minor comment refactoringJordan Henderson2017-09-011-3/+4
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* | Update documentationJordan Henderson2017-08-311-39/+158
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* | Fix bug where incorrect amount of data was being read from the fileJordan Henderson2017-08-101-1/+1
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* | Suggested changes from code reviewJordan Henderson2017-07-071-2/+1
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* | Amend header comment errorJordan Henderson2017-07-061-19/+18
| | | | | | Suggested fix for allocating too small of a buffer for the chunk data
* | Clean up remaining warningsJordan Henderson2017-07-061-6/+21
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* | Add prototype for H5D__cmp_filtered_collective_io_info_entry_ownerJordan Henderson2017-07-051-0/+2
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* | Add comment for memory copy possibly not being necessary anymore forJordan Henderson2017-07-051-0/+1
| | | | | | Multi-Chunk I/O
* | Remove use of H5E_CANTDISTRIBUTE errorJordan Henderson2017-07-051-1/+1
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* | Add comment for full overwrite special caseJordan Henderson2017-07-051-0/+8
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* | Add remaining documentation/commentsJordan Henderson2017-07-051-23/+54
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2017-07-051-6/+4
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '6428a637752753cc8a9007c0c3c38b9ea9cc97fd': (165 commits) Skip HDFFV-10160 filenotclosed test for split/multi driver Temporary skip this test for split/multi driver. Further investigation to resolve the failure is needed. Please enter the commit message for your changes. Lines starting More minor whitespace cleanup Fixed a minor comment typo in H5R.c * Reverted removal of H5I_REFERENCE to avoid breaking binary compatibility. * Added a quick H5I_REFERENCE smoke check to test_misc19() in tmisc.c. Added missing free() call to test_misc19(). Purged the unused H5I_REFERENCE from the library. Added a test for VFD IDs to testhdf5. Revert "Partial removal of NDEBUG ifdefs from the library." Partial removal of NDEBUG ifdefs from the library. Removed compiler flag cleanup since Solaris chokes on it. Fix for HDFFV-10160 Modifications to fix the assertion/abort failure when the application does not close the file. Fixed a bug in autotools Fortran processing where a test for the presence of a C long double type always returned true. Updated the --enable-debug/production handling in configure.ac so that it more reliably indicates that the configure option can no longer be used. Previously, using --enable-debug="", etc. would not trigger an error (even though such usage is unlikely). Added awk processing to remove extraneous whitespace from H5_ flags in configure. Fixed a comment in configure.ac HDFFV-10219 another mode change HDFFV-10219 change subset to use BINARY mode for h5dump HDFFV-10219 default input binary to NATIVE Set default of var to NATIVE HDFFV-10219 - disable h5dump tests until h5import NATIVE is fixed ...
| * | Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| |/ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* | Revise shared chunks redistribution algorithmJordan Henderson2017-05-011-23/+25
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* | Separate shared chunks redistribution code out to its own functionJordan Henderson2017-05-011-207/+245
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* | Fix deadlocking issueJordan Henderson2017-04-131-58/+98
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* | Fix link-chunk I/O by tidying up local_info_arrayJordan Henderson2017-04-131-12/+13
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* | Minimize size of H5D_filtered_collective_io_info_t structJordan Henderson2017-04-111-204/+102
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* | Revise first-phase algorithm to only use rank 0 for redistributionJordan Henderson2017-04-101-24/+155
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* | Add commentsJordan Henderson2017-04-101-2/+3
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* | In current implementation, list must be gathered to allJordan Henderson2017-04-091-1/+1
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* | Correct error with usage of array_gather functionJordan Henderson2017-04-091-3/+3
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* | Make array_gather routine more generalJordan Henderson2017-04-091-45/+66
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* | Updated commentsJordan Henderson2017-03-301-20/+17
| | | | | | | | changed variable name for list containing all chunks in the I/O operation
* | Add comments to H5D_filtered_collective_io_info_t data structureJordan Henderson2017-03-301-11/+11
| | | | | | | | Correct comment and error message about retrieving the threshold for performing either Linked-chunk or Multi-chunk I/O
* | Remove debugging statementsJordan Henderson2017-03-301-342/+6
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* | removed erroneous casts from non-rvalue H5MM_free() calls. Replaced ↵Frank T Willmore2017-02-211-6/+12
| | | | | | | | assignment of void return values with explicit value of NULL
* | Fix issue with uninitialized chunk index during chunk re-insertion intoJordan Henderson2017-02-201-2/+12
| | | | | | index
* | Remove potential infinite loops caused by goto in error label regionJordan Henderson2017-02-101-3/+3
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* | Remove note about src_type_size vs dst_type_sizeJordan Henderson2017-02-091-1/+0
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* | Fix issue in H5D__mpio_array_gather when no one contributes anythingJordan Henderson2017-02-031-22/+28
| | | | | | | | Fix issue in Multi-chunk IO where IO would crash if no one has a selection
* | Iterator for initial chunk entry IO operation should use source datatypeJordan Henderson2017-02-031-1/+1
| | | | | | size
* | Fix bug where data doesn't write correctly when MEMSPACE isnt the sameJordan Henderson2017-02-031-7/+33
| | | | | | as FILESPACE
* | Check return value of H5S_GET_EXTENT_NPOINTS macroJordan Henderson2017-02-021-13/+31
| | | | | | | | | | Fix bug where a process with no selection during Multi-chunk IO could cause other processes to copy back incorrect chunk information after chunk re-allocation
* | Fix macro complaint in H5Dmpio.cJordan Henderson2017-02-021-3/+15
| | | | | | Fix debugging file output for test suite
* | Test code for user passing one-chunk-per-process hint to libraryJordan Henderson2017-01-311-7/+15
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