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* Convert hbool_t --> bool in src (#3496)Dana Robinson2023-09-051-9/+9
| | | | | | | | | | | * hbool_t --> bool in src * Does not remove TRUE/FALSE * Public header files are unchanged * Public API calls are unchanged * TRUE/FALSE --> true/false in src * Add deprecation notice for hbool_t
* Made HGOTO_ERROR a do-while loop (#3308)Sean McBride2023-08-021-19/+19
| | | | | * Made HGOTO_ERROR a do-while loop
* Another round of fixing -Wextra-semi-stmt warnings (#3264)Sean McBride2023-07-241-5/+5
| | | Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed more warnings about extra semicolons (#3249)Sean McBride2023-07-181-2/+2
| | | | | | | * Require semi-colon after H5_CHECK_OVERFLOW calls Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Remove HD from HDmem* calls (#3211)Dana Robinson2023-06-291-1/+1
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* Remove programmer/date from comments (#3210)Dana Robinson2023-06-291-24/+0
| | | | * Removes Programmer: and Date: fields * Fixes a few Modifications: fields leftover from previous work
* Rename HDassert() to assert() (#3191)Dana Robinson2023-06-281-13/+13
| | | | | * Change HDassert to assert * Fix bin/make_err
* Convert H5F haddr_t macros to H5 (#3039)Dana Robinson2023-06-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | Several macros for handling haddr_t values exist in H5Fprivate.h and have H5F prefixes, even though they have nothing to do with a particular file (e.g., H5F_addr_lt()). These macros have been moved to H5private.h and renamed to have an H5 prefix. Affected macros: H5F_addr_overflow H5F_addr_defined H5F_addr_eq H5F_addr_ne H5F_addr_lt H5F_addr_le H5F_addr_gt H5F_addr_ge H5F_addr_cmp H5F_addr_overlap H5F_addr_pow2 was unused and removed instead of converted.
* Addressed various Doxygen grammar issues. (#2524)Scot Breitenfeld2023-03-131-1/+1
| | | | | | | | | | * reviewed H5A * Addressed various grammar issues. * remove double words, spelling fixes * replace the use of rawdata with raw data
* Update copyright headers (#2184)Larry Knox2022-11-011-1/+0
| | | | | * Updated source file copyright headers to remove "Copyright by the Board of Trustees of the University of Illinois", which is kept in the top-level COPYING file.
* Develop clang 13 format (#1933)Allen Byrne2022-07-261-8/+8
| | | | | * Update format source to clang 13 * More format changes
* Removes the STATIC flavor of FUNC_ENTER macros (#1622)Dana Robinson2022-04-081-8/+8
| | | | | * Removes the STATIC flavor of FUNC_ENTER macros
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* Replace H5E_ATOM major error category with H5E_ID (#121)Dana Robinson2020-11-301-1/+1
| | | | | | | | | | * Renames H5I_ATOM to H5I_ID, among other related changes * Java has been updated. * Fortran is failing on my VM, even though I don't touch that. * Adds a RELEASE.txt note for H5E_ATOM to H5E_ID changes * Fixes typos in comments
* Clang-format of source filesAllen Byrne2020-09-301-107/+91
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* VOL FEATUREDana Robinson2018-10-101-15/+16
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* Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-241-5/+5
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-36/+45
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* Revert "Merge pull request #567 in HDFFV/hdf5 from ↵Dana Robinson2017-06-091-27/+19
| | | | | | | ~DEROBINS/hdf5_der:develop to develop" This reverts commit 4242753848c44ab3b5d226e66225eac2f64db314, reversing changes made to b0e79fe6dd20ec7aa1b3e5f0f8b370639a4ef5bd.
* * Made STATIC free lists EXTERN for H5O_layout_t.Dana Robinson2017-06-071-1/+1
| | | | * Made all non-global instances of H5O_layout_t in H5Pdcpl.c dynamic.
* Updated H5O_layout_t dynamic work to use the H5FL interface.Dana Robinson2017-06-071-3/+5
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* Made some H5O_layout_t stack allocations dynamic (quiets warnings).Dana Robinson2017-06-061-19/+25
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r29626] Description:Quincey Koziol2016-04-041-12/+6
| | | | | | | | Revise method of invoking object flush callback. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29548] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-241-2/+2
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r28606] Description:Quincey Koziol2015-12-131-23/+11
| | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28452] Description:Quincey Koziol2015-11-231-3/+2
| | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r27835] Description:Quincey Koziol2015-09-211-9/+9
|\ | | | | | | | | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r27768] Description:Quincey Koziol2015-09-141-9/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27546] Add tests for H5O__dset_bh_info (H5Oget_info) and unlimited ↵Neil Fortner2015-08-211-3/+1
| | | | | | | | | | | | | | | | selections in a region reference. Tested: ummon
* | [svn-r27504] Change comments/code around to reflect decision to have virtual ↵Neil Fortner2015-08-131-1/+2
| | | | | | | | | | | | | | | | datasets always return TRUE when their is_alloc function is called. Tested: ummon
* | [svn-r26261] Commit working but incomplete prototype. Does not perform I/O.Neil Fortner2015-02-201-1/+10
| | | | | | | | Tested: ummon
* | [svn-r26198] INCOMPLETE, UNWORKING CODENeil Fortner2015-02-171-0/+3
|/ | | | Commit progress through 1610 CST 2/17/15
* [svn-r22646] Description:Quincey Koziol2012-08-081-1/+1
| | | | | | | | | Changes resulting from Klocwork static analysis tool, from Mark Miller @ LLNL (miller86@llnl.gov). Tested on: Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x (too minor to require h5committest)
* [svn-r22287] Description:Quincey Koziol2012-04-161-60/+56
| | | | | | | | Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22164] Fixed a bug in H5Ocopy(): When copying an opened object, call ↵Vailin Choi2012-03-281-1/+49
| | | | | | | the object's flush class action to ensure that cached data is flushed so that H5Ocopy will get the correct data. (HDFFV-7853)
* [svn-r21919] Description:Quincey Koziol2012-02-091-8/+8
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r18618] Description:Quincey Koziol2010-04-221-3/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | Add new internal object header routines to query the header chunk that a message is in, and to lock/unlock a message into a chunk (so it doesn't get moved into another chunk during allocation/free events). Also, move dataspace message to beginning of object header messages added to a dataset's object header, so it can be locked into chunk #0 (when performing SWMR operations). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18571] Description:Quincey Koziol2010-04-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18542 from metadata journaling "merging" branch to trunk: Bring new object header pin/unpin & protect/unprotect routines and split-out object header chunk proxy changes from metadata_journaling branch to "merging" branch, along with some other minor tweaks to clean up compiler warnings, etc. Also: clean up chunk protect/unprotect calls when allocating or freeing space in a chunk, optimize metadata accumulator code to avoid some re-reading of information from the file, refactor H5O_pin/H5O_unpin from way they are done on the merging branch back to way they were previously done on trunk, other minor code cleanups, etc. Tested on FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18388] Description:Quincey Koziol2010-03-061-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity session from branch into trunk: r18378: Fixed coverity issues 207 and 322. Pointer hdr was checked for NULL after being asserted and dereferenced. Check was removed. r18379: Fix coverity issues # 88 and # 435. r18380: Fixed Coverity issue # 85. Added check of returned pointer for NULL before use. r18381: Resolve coverity issues # 214 and # 215 r18382: Issue 131: Add null checks to allocations and check for free in error handling r18383: Issue 421: Reorganized code to make intention clearer. Also, set local variable fl to NULL after transfer to tail. Heap->freelist will take care of all allocations r18384: Coverity #249 and #250 - STRING_ATT_CHECK wasn't allocated before being used and freed in function test_write_vl_string_attribute and test_read_vl_string_attribute. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod (h5committested in daily tests)
* [svn-r18385] Description:Quincey Koziol2010-03-061-15/+17
| | | | | | | | Tweak fix in r18372 to reset other messages read in also. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r18372] Fix for bug #1773 - I added the call to H5O_msg_reset after ↵Raymond Lu2010-03-051-1/+11
| | | | | | | | H5D_chunk_bh_info to free the PLINE structure in the function H5O_dset_bh_info. This is to prevent memory leak. Tested on jam and tested 1.8 on jam, too - simple fix.
* [svn-r17838] Description:Quincey Koziol2009-11-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Further refactoring of v2 B-tree code, moving toward being able to pass a context information to a client's encode/decode callbacks. Also, clean up of other minor compiler warnings and code formatting issues. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17623] Description:Quincey Koziol2009-10-091-2/+2
| | | | | | | | | | | | | | | | | | | | | | Bring "compress group's fractal heap" feature from branch back to trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17553] Description:Quincey Koziol2009-09-291-5/+27
| | | | | | | | | | | | | | | | | | | | | | Bring general fixes/improvements from file_free_space branch back to trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17281] Description:Quincey Koziol2009-07-311-1/+1
| | | | | | | | | | | | | | | | | | | | | | Further refactoring of the dataset layout information, to separate the storage information from the layout info. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17146] Description:Quincey Koziol2009-07-021-3/+17
| | | | | | | | | | | | | | | | | | | | | | Bring a bunch of misc. improvements & tweaks from the revise_chunks branch back to the trunk, so that future merges won't be so painful. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16394] Description:Quincey Koziol2009-02-011-1/+1
| | | | | | | | | | | | Rename H5O_msg_read_real -> H5O_msg_read_oh, to be more consistent with other routines in library. Move H5O_msg_read_oh and H5O_msg_exists_oh from package to private header file, so other routines in library can use them. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r16354] Description:Quincey Koziol2009-01-271-1/+1
| | | | | | | | | | | Bring r16353 back from revise_chunks branch: Refactor internal layout information, making it easier to add another type of chunk index. Tested on: FreeBSD/32 6.3 (duty) (other platforms tested with original patch)
* [svn-r16062] Purpose: Allow per-dataset rdcc configurationNeil Fortner2008-11-121-5/+20
| | | | | | | | Description: Adds 3 new public functions: H5Pset_chunk_cache, H5Pget_chunk_cache, and H5Dget_access_list. First implementation of dataset access properties. See RFC_chunk_cache_functions for details. Tested: kagiso, linew, smirom (h5committest)
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