hdf5.git - Mirror from: https://github.com/HDFGroup/hdf5.git

	Commit message (Collapse)	Author	Age	Files	Lines
*	[svn-r29903] merge from trunk.	Mohamad Chaarawi	2016-05-09	1	-38/+66
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\| *	[svn-r29659] Added fixed array chunk indexing from revise_chunks.	Dana Robinson	2016-04-07	1	-0/+5
\| \| \| \| \| \| \| \| \| \|	Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 Autotools serial w/ Java, Fortran, & C++
\| *	[svn-r29635] Description:	Quincey Koziol	2016-04-05	1	-0/+27
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Bring support for earray and v2 B-trees from revise_chunks branch to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
\| *	[svn-r29614] Description:	Quincey Koziol	2016-04-03	1	-0/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Bring updated code for setting chunk size information from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
\| *	[svn-r29612] Description:	Quincey Koziol	2016-04-03	1	-0/+2
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
\| *	[svn-r29607] Description:	Quincey Koziol	2016-04-02	1	-0/+3
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Bring "don't filter partial edge chunks" capability from revise_chunks to trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/debug, production & parallel (h5committest forthcoming)
\| *	[svn-r29549] Minor normalization w/ revise_chunks in preparation for big merge.	Dana Robinson	2016-03-24	1	-6/+6
\| \| \| \| \| \| \| \| \| \| \| \|	Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
\| *	[svn-r29548] Minor normalization w/ trunk in preparation for big merge.	Dana Robinson	2016-03-24	1	-1/+1
\| \| \| \| \| \| \| \| \| \| \| \|	Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
\| *	[svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configure	Dana Robinson	2016-02-22	1	-0/+2
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
\| *	[svn-r29084] Revert of:	Dana Robinson	2016-02-11	1	-2/+0
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	r29069 and 72 (gheap cleanup) r29041 and 43 (HDFFV-8740 external storage) These cause problems in the daily tests. They will be re-introduced when their respective problems have been addressed. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial (check-vfd) w/ Fortran and C++ autotools parallel w/ Fortran CMake serial
\| *	[svn-r29057] added dxpl type checking when debug mode is enabled ↵	Mohamad Chaarawi	2016-02-07	1	-9/+13
\| \| \| \| \| \| \| \| \| \| \| \|	(H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
\| *	[svn-r29041] Patch from Steffen Kiess that allows a relative path to be ↵	Dana Robinson	2016-02-04	1	-0/+2
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	specified for external dataset files set via H5Pset_external(). Resolves HDFFV-8740 Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial
\| *	[svn-r28777] Description:	Quincey Koziol	2016-01-03	1	-24/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Add --enable-memory-alloc-sanity-check option to configure, to track and sanity check memory allocations within the library. This is orthogonal to the --enable-using-memchecker option and can be used with/without it. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
\| *	[svn-r28756] Description:	Quincey Koziol	2015-12-30	1	-5/+5
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Minor code neatening and cleanups (same as r28755) on revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (Too minor for h5committest)
\| *	[svn-r28723] Description:	Quincey Koziol	2015-12-22	1	-1/+8
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Bring over rest of performance improvements for extending chunked datasets and normalize against revise_chunks branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel) (h5committest forthcoming)
* \|	[svn-r28715] - merge from trunk	Mohamad Chaarawi	2015-12-21	1	-5/+3
\|\ \ \| \|/ \| \| \| \|	- fix farray, earray, and btree test to use correct function to retrieve internal file struct.
\| *	[svn-r28643] Add H5D_t pointer to chunk callback.	Dana Robinson	2015-12-14	1	-1/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Normalization for future single chunk indexing. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
\| *	[svn-r28606] Description:	Quincey Koziol	2015-12-13	1	-4/+2
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* \|	[svn-r27972] merge from trunk.	Mohamad Chaarawi	2015-10-06	1	-2/+12
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\| *	[svn-r27946] Brought VDS branch in sync with trunk (up to r27945).	Dana Robinson	2015-10-04	1	-2/+0
\| \|\ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Tested on Ubuntu 15.04 (Linux 3.19 x86_64), gcc 4.9.2, MPICH 3.1.4 and CMake 3.3.2. - Autotools serial w/ Fortran, C++ - Autotools parallel w/ Fortran - CMake serial w/ Fortran, C++
\| \| *	[svn-r27939] Remove H5D__iterate and use H5S_select_iterate directly	Jerome Soumagne	2015-10-02	1	-2/+0
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Add internal library callback to H5S_select_iterate to avoid having to pass hid_t objects internally
\| * \|	[svn-r27835] Description:	Quincey Koziol	2015-09-21	1	-4/+3
\| \|\ \ \| \| \|/ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
\| * \|	[svn-r27630] Description:	Quincey Koziol	2015-08-31	1	-2/+1
\| \|\ \ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Bring in changes from the trunk, through r27628. Tested on: MacOSX/64 10.10.5 (amazon) w/serial (h5committest not required on this branch)
\| * \| \|	[svn-r27323] Implement support for H5Dflush for VDS.	Neil Fortner	2015-07-02	1	-3/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Implement support for H5Ocopy on VDS. Testing for H5Ocopy on VDS. Fix check-vfd failure. Other minor fixes/cleanup. Note there is a preexisting failure in h5repack testing. Tested: ummon
\| * \| \|	[svn-r27256] Merge revisions 27102 through 27255 from trunk to vds branch.	Neil Fortner	2015-06-19	1	-0/+1
\| \|\ \ \ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Tested: ummon
\| * \| \| \|	[svn-r27192] Improve support for printf selections (support partial blocks with	Neil Fortner	2015-06-12	1	-4/+0
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	H5_VDS_FIRST_MISSING) Add test for this Rework VDS code to not depend on unlimited selections having a "clipped" state in preparation for removing the clipped state from unlimited selections. Other bug fixes/cleanup Tested: Kubuntu 64 (home computer)
\| * \| \| \|	[svn-r27103] Merge revisions 26780 through 27102 from trunk to vds branch.	Neil Fortner	2015-05-21	1	-22/+25
\| \|\ \ \ \ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Tested: ummon
\| * \| \| \| \|	[svn-r27022] Add new functions H5Pset_virtual_dataspace_bounds and	Neil Fortner	2015-05-05	1	-0/+2
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	H5Pget_virtual_dataspace_bounds. Minor refactor of dataset initialization code to make this cleaner. Update h5_vds-percival-unlim-maxmin.c Other minor fixes/cleanup. Tested: ummon
\| * \| \| \| \|	[svn-r26962] Add support for unlimited selections to VDS code.	Neil Fortner	2015-04-29	1	-1/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Not tested (except for percival-unlim example) Fix percival-unlim example Other bug fixes/cleanup Tested: Fedora 64
\| * \| \| \| \|	[svn-r26781] Merge revisions 26305 through 26780 from trunk to vds branch.	Neil Fortner	2015-04-10	1	-2/+2
\| \|\ \ \ \ \ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Tested: ummon
\| * \| \| \| \| \|	[svn-r26411] Add support for I/O in very simple cases (virtual mapping and ↵	Neil Fortner	2015-03-09	1	-0/+5
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	file space are both H5S_ALL). Note make check fails in h5dump test (unrelated to this checkin). Tested: ummon
\| * \| \| \| \| \|	[svn-r26296] Merge r26050 through 26295 from trunk to vds branch.	Neil Fortner	2015-02-24	1	-1/+1
\| \|\ \ \ \ \ \ \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Tested: ummon
\| * \| \| \| \| \| \|	[svn-r26261] Commit working but incomplete prototype. Does not perform I/O.	Neil Fortner	2015-02-20	1	-0/+3
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Tested: ummon
\| * \| \| \| \| \| \|	[svn-r26198] INCOMPLETE, UNWORKING CODE	Neil Fortner	2015-02-17	1	-2/+9
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Commit progress through 1610 CST 2/17/15
\| * \| \| \| \| \| \|	[svn-r26153] INCOMPLETE, UNWORKING CODE	Neil Fortner	2015-02-10	1	-0/+5
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Commit progress through 2/10/15 at 1500 CST
* \| \| \| \| \| \| \|	[svn-r27959] - merge from trunk (pre-VDS)	Mohamad Chaarawi	2015-10-05	1	-1/+2
\|\ \ \ \ \ \ \ \ \| \| \|_\|_\|_\|_\|_\|/ \| \|/\| \| \| \| \| \| \| \| \| \| \| \| \| \|	- fix VOL initialization and Native plugin registration with new FAPL changes
\| * \| \| \| \| \| \|	[svn-r27811] Description:	Quincey Koziol	2015-09-16	1	-1/+2
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* \| \| \| \| \| \| \|	[svn-r27777] merge from trunk.	Mohamad Chaarawi	2015-09-14	1	-6/+4
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\| * \| \| \| \| \| \|	[svn-r27768] Description:	Quincey Koziol	2015-09-14	1	-3/+1
\| \| \|_\|_\|_\|_\|/ \| \|/\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
\| * \| \| \| \| \|	[svn-r27615] Description:	Quincey Koziol	2015-08-29	1	-0/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Protect dataset that's closing from being flushed again, if it's the last one holding a file open. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest forthcoming)
\| * \| \| \| \| \|	[svn-r27613] Description:	Quincey Koziol	2015-08-29	1	-2/+0
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Align w/vds branch: Move code for initializing contiguous datasets into layout 'init' callback. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest forthcoming)
\| * \| \| \| \| \|	[svn-r27612] Description:	Quincey Koziol	2015-08-29	1	-1/+2
\| \| \|_\|_\|_\|/ \| \|/\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Align w/vds branch: Whitespace cleanup, move common code for opening a dataset into a new routine, misc. style cleanups. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest upcoming)
* \| \| \| \| \|	[svn-r27208] merge from trunk.	Mohamad Chaarawi	2015-06-16	1	-0/+1
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\| * \| \| \| \|	[svn-r27198] Set "entire_chunk" to false in H5D__chunk_write() for point ↵	Vailin Choi	2015-06-12	1	-0/+1
\| \| \|_\|_\|/ \| \|/\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	selection as duplicate points are not checked to determine that it is really an "entire chunk". The bug appears from running the mdset.c test. This is a short-term fix for the problem.
* \| \| \| \|	[svn-r27090] merge from trunk.	Mohamad Chaarawi	2015-05-15	1	-10/+12
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\| * \| \| \|	[svn-r27058] Description:	Quincey Koziol	2015-05-13	1	-10/+12
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Convert internal chunk structures to use 'scaled' coordinates instead of absolute coordinates. Tested on: Mac OSX/64 10.10.3 (amazon) w/parallel & serial Linux 2.6.x/32 (jam) w/parallel & serial Linux 2.6.x/64 (koala) w/serial
* \| \| \| \|	[svn-r27050] merge from trunk.	Mohamad Chaarawi	2015-05-11	1	-14/+15
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\| * \| \| \|	[svn-r26996] Description:	Quincey Koziol	2015-05-02	1	-3/+0
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Eliminate unneccessary 'rdcc' field from common chunk info struct. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (Too minor to require h5commitest)
\| * \| \| \|	[svn-r26995] Description:	Quincey Koziol	2015-05-02	1	-1/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Clean up chunk 'prune by extent' and flush code, and make the rehashing routine 'update cache' hold onto more chunks, instead of evicting them as aggressively. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel (h5committest forthcoming)
\| * \| \| \|	[svn-r26993] Description:	Quincey Koziol	2015-05-02	1	-1/+1
\| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \|	Align w/incoming chunk performance changes, including some small performance improvements here, as well as a few minor general code cleanups. Tested on: Mac OSX/64 10.10.3 (amazon) w/serial & parallel (Too minor to require h5committest)