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* Implement public H5Sselect_project_intersection(). Updated internalNeil Fortner2019-11-131-5/+5
| | | | | | | | algorithm to (optionally) avoid sharing selection data structures. Tested internal code (including with valgrind) by setting VDS code to avoid sharing selection, has since been changed to share selection for performance, so this code is not yet tested in regression tests. API has not been tested.
* Refactor H5S__hyper_project_intersection to operate directly on spanNeil Fortner2019-06-011-0/+7
| | | | | trees, improving performance and removing the conditionn that the extents be equal.
* Add an 'unwrap' VOL callback, so that connectors can unwrap an underlyingQuincey Koziol2019-04-211-1/+1
| | | | object without closing it. (Especially needed for pass-through connectors)
* HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-061-0/+4
| | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-3/+3
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* Fix issue with direct chunk write not updating the "last chunk" indexNeil Fortner2019-03-061-0/+50
| | | | | cache. Fix issues involving datasets being "no allocated" when they contain cached raw data.
* Refactor infrastructure for setting FAPL information from environmentQuincey Koziol2018-11-281-1/+0
| | | | | | variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors. Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
* Remove most debugging shims & scaffolding.Quincey Koziol2018-11-041-8/+0
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* Remove virtual dataset refresh code's direct use of native VOL plugin's ID.Quincey Koziol2018-10-271-9/+12
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-10-251-2/+2
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| * Split H5VLnative.h into public and private files and updatedDana Robinson2018-10-201-1/+1
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| * Updates to the VOL ID and object API calls.Dana Robinson2018-10-171-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This brings the H5VL code in line with the H5I code regarding naming, parameter order, etc. Several public API calls were affected by this change. These changed names to reflect their use with VOL drivers: H5VLregister() --> H5VLregister_driver() H5VLregister_by_name() --> H5VLregister_driver_by_name() H5VLunregister() --> H5VLunregister_driver() H5VLis_registered() --> H5VLis_driver_registered() This call was renamed to match H5Iregister(). The order of the first two parameters also reversed and the object pointer is now const. H5VLobject_register() --> H5VLregister()
* | Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-0/+1
|/ | | | modified: test/dsets.c
* VOL FEATUREDana Robinson2018-10-101-6/+18
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* Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-241-4/+4
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* Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-2/+2
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-32/+4
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Fix for HDFFV-10469: set to latest format for virtual layout encoding.Vailin Choi2018-05-171-4/+32
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* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-72/+205
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-04-291-98/+237
| |\ | | | | | | | | | merge_hyperslab_updates
| | * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-45/+60
| | |\ | |_|/ |/| | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| | * Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-50/+176
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| * | Checkpoint normalization against incoming hyperslab / selection / dataspaceQuincey Koziol2017-03-281-8/+8
| | | | | | | | | | | | improvements.
* | | HDDFV-10361 combine duplicated prefix utility functionsAllen Byrne2018-01-051-284/+35
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* | | HDFFV-9724 init var to nullAllen Byrne2017-12-291-1/+1
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* | | HDFFV-9724 prefix of 0 length should be null valueAllen Byrne2017-12-291-1/+1
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* | | HDFFV-9724 Corrected files and verified testsAllen Byrne2017-12-281-7/+264
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* | | Revert "Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to ↵lrknox2017-12-221-246/+7
| | | | | | | | | | | | | | | | | | | | | develop" This reverts commit b1223dd653e65e076af92b2dfe236f3704da81c8, reversing changes made to b25f123f5f5e25c1447a6a02861cb7c7265c12f2.
* | | HDFFV-9724 Copy efc_open search from Lextern_traverseAllen Byrne2017-12-151-19/+211
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* | | HDFFV-9724 Initial changes and testAllen Byrne2017-12-111-9/+56
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* | Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
|/ | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-1/+1
| | | | and the tool and API wrappers will be coming in over the weekend.
* Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-261-2/+2
| | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+220
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-7/+8
| | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* [svn-r28797] Description:Quincey Koziol2016-01-051-5/+5
| | | | | | | | Clean up another round of memory allocation mis-matches. Tested on: Linux/32 2.6.x (jam) w/serial MacOSX/64 10.11.2 (amazon) w/serial & parallel
* [svn-r28606] Description:Quincey Koziol2015-12-131-4/+5
| | | | | | | | | | Revisions to normalize revise chunks vs. trunk, plus push dataset metadata changes into the cache immediately (instead of holding them within the dataset data structures). Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r28533] Fix loops in H5Dvirtual.c to only loop over used entries in VDS ↵Neil Fortner2015-12-071-3/+3
| | | | | | | | mapping list, instead of all allocated entries. Tested: ummon (too minor for full h5committest)
* [svn-r28452] Description:Quincey Koziol2015-11-231-1/+1
| | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28311] Description:Quincey Koziol2015-11-091-0/+1
| | | | | | | | Add missing callback to virtual layout "class" structure. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r27957] Description:Quincey Koziol2015-10-051-23/+12
| | | | | | | | Minor whitespace cleanups. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r27944] Description:Quincey Koziol2015-10-041-6/+12
| | | | | | | | Avoid duplicating source FAPL & DAPL if they are already available. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r27835] Description:Quincey Koziol2015-09-211-4/+6
| | | | | | | | Sync w/trunk. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel (h5committest not required on this branch)
* [svn-r27646] Add version number to VDS global heap object encoding.Neil Fortner2015-09-011-1/+1
| | | | | | | | | Fix handling of layout version number. Other minor fixes/cleanup. NOTE: This commit changes the file format for VDS, all files must be re-generated. Tested: ummon
* [svn-r27538] Add tests to cover remaining code coverage assertions in src ↵Neil Fortner2015-08-201-7/+2
| | | | | | | | directory except for those in H5Doh.c and H5Shyper.c. Tested: ummon
* [svn-r27528] Modify printf implementation to not open source datasets that ↵Neil Fortner2015-08-191-4/+12
| | | | | | | | were previously opened when calculating the VDS extent, instead assuming they still exist. Tested: ummon
* [svn-r27527] Add tests to hit code coverage assertions in H5Olayout.c.Neil Fortner2015-08-191-8/+10
| | | | | | Fix issue in VDS delete routine. Tested: ummon
* [svn-r27520] Add new test for all 3 selection types in the same VDS.Neil Fortner2015-08-181-7/+2
| | | | | | Minor cleanup in the tests. Tested: ummon
* [svn-r27506] H5Dset_extent no longer holds all printf source datasets open.Neil Fortner2015-08-141-4/+9
| | | | | | Other items identified during reviews. Tested: ummon
* [svn-r27505] Add support for H5Dset_extent for VDS.Neil Fortner2015-08-141-48/+151
| | | | | | | Add tests for this. Other bug fixes/cleanup Tested: Kubuntu 64 (home computer)
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