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* Removes obsolete equivalents of C99's __func__ (#800)Dana Robinson2021-06-291-1/+1
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* Removes alternative function enter/leave macro scheme (#678)Dana Robinson2021-05-291-47/+0
| | | | | | | | | | | | | | | | | | | | | * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Minor parallel improvements (#519)Quincey Koziol2021-03-261-9/+4
| | | | | | | * Improve MPI error reporting, handled failed operations in parallel tests more nicely, and clean up MPI_Allreduce for determining whether to break collective I/O * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Updates HSYS_GOTO_ERROR to emit GetLastError() values on Win32 (#492)Dana Robinson2021-03-231-0/+30
| | | | | | | | | | | * Committing clang-format changes * Updates H5SYS_GOTO_ERROR to emit Win32's GetLastError() * Committing clang-format changes * Format source changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixed many -Wreserved-id-macro warnings by fixing header guard spelling (#361)Sean McBride2021-02-231-3/+3
| | | | | | | | | | | | | | | | * Fixed many -Wreserved-id-macro warnings by fixing header guard spelling Removed leading underscore(s) from header guard spelling. Used 2 regexes: ` _H5(.*)_H` ` __H5(.*)_H` Applied case-insensitively to only .h files. * Modified scripts that generate header files to not use underscore prefix Interestingly, there was already no leading underscore in the trailing comment at the end of the file * Fixed remaining -Wreserved-id-macro warning not caught by regex
* Update license url (#332)Larry Knox2021-02-171-1/+1
| | | | | | * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories.
* More general message about using description for errnoThomas Kluyver2020-10-151-2/+6
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* Note that the description for system errors may be used by h5pyThomas Kluyver2020-10-151-0/+2
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* Clang-format of source filesAllen Byrne2020-09-301-62/+80
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* Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-261-7/+3
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-2/+0
| |\ | | | | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-5/+3
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* | Changes to make timers within the library monotonic.Quincey Koziol2017-09-031-1/+1
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* [svn-r28861] Minor warning format string fix (HDFFV-9640).Dana Robinson2016-01-121-1/+1
| | | | | Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools parallel only (MPICH 3.1.4)
* [svn-r27407] Updated the H5_ATTR_* macros.Dana Robinson2015-07-181-1/+1
| | | | | | | | | | | | | - Updated the preprocessor logic that defines the H5_ATTR_* macros. The Solaris Studio compiler understands __attribute__ but not the specific attributes that we use. The H5_ATTR_* macros are now defined as blank with that compiler which significantly cleans up the warnings, making debugging easier. - Replaced a few lingering __attribute__ macros with H5_ATTR_* markup. Tested on: h5committest Solaris w/ Solaris Studio (emu)
* [svn-r26678] add ifdef checks and setting for __attribute__ in a public ↵Mohamad Chaarawi2015-03-311-1/+1
| | | | | | place to allow usage in public routines.
* [svn-r23988] Description:Quincey Koziol2013-08-101-2/+3
| | | | | | | Make compiler happier and issue less warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc 4.8
* [svn-r22601] Purpose: Fix HDFFV-5853Neil Fortner2012-07-251-0/+21
| | | | | | | | | | | | | | Description: When jumping out from between H5_BEGIN_TAG and H5_END_TAG macros using HGOTO_ERROR or HGOTO_DONE, the previous metadata tag is not reset on the dxpl. This could cause problems when, for example, calling H5Ocopy within an H5Literate callback. Added new HGOTO_ERROR_TAG and HGOTO_DONE_TAG macros which must be used in place of the above between H5_BEGIN_TAG and H5_END_TAG. Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r21919] Description:Quincey Koziol2012-02-091-1/+1
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r18109] Description:Quincey Koziol2010-01-151-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18076-18096 from hdf5_1_8_coverity branch to trunk: r18076: Correct Coverity issue #1 by removing dead code r18077: Fix coverity item 142. When an error occurred while copying a linked list in H5S_point_copy, the library would not free the partially allocated list. Added code to free the list in this case. r18078: Correct Coverity issue #2 by removing impossible to reach code. r18079: Correct #3 by removing impossible to reach code. r18080: Correct Coverity issue #4 by removing impossible to reach code. r18081: fix coverity 26 , check (dblik->parent) before calls H5HF_man_iblock_detach(). r18082: Fixed coverity issues 321 and 316. 321: freed sm_buf in error handling to remove resource leak. Also set sm_buf to NULL after other instances in which it is freed to prevent double free. 316: initialized nmembs to 0. r18083: Correct Coverity issue #6 by removing debugging knob from error reporting code. r18084: Fix coverity item 269 + others. When a error occurred in a function using the h5tools error framework, the "past_catch" variable would not be set to true because that statement was before the label that goto jumped to. This could cause a failure in the cleanup section to go back to the start of the section, freeing variables twice, etc. Moved the label infront of past_catch=TRUE. r18085: fixed coverity #27, check if (heap) before use heap->obj.... r18086: fixed coverity #28, check curr_span not null before use it at if(curr_span && (io_bytes_left==0 || curr_seq>=maxseq)) r18087: Correct Coverity issue #7 by cleaning up correctly on error r18088: Correct Coverity #8 by removing unchanged variable checking code. r18089: Correct Coverity issue #9 - remove impossible to reach code. r18090: Correct Coverity issue #11 by removing impossible to reach code. Also clean up some minor style issues. r18091: Fix coverity items 314 and 318. Changed the improper assertion of the return value of a library function to a check, and a return(void) on failure. r18092: Fix coverity item 70. Changed the improper assertion of the return value of a library function to a check, and a return(void) on failure. r18093: Correct Coverity issue #12 by removing dead code. r18094: Correct Coverity issue #16 by removing debugging code. r18095: Fixed coverity issue # 271. Removed redundant checking and freeing of sm_buf1 and sm_buf2. r18096: Correct Coverity issue #17 by refactoring test to remove dead code. Also, removed previous "coverity" statements in comments, we'll review those issues again and see if we can figure them out, now that we have more experience with Coverity. Tested on: Mac OS X/32 10.6.2 (amazon)
* [svn-r17863] Description:Quincey Koziol2009-11-101-7/+4
| | | | | | | | | | | | | | | | | | | | | | Switch HSYS_GOTO_ERROR() & HSYS_DONE_ERROR() macros to use printf-like functionality for displaying system error messages. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17860] Description:Quincey Koziol2009-11-101-7/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | "Normalize" object names for external links, making them into the same form as used for soft links. Begin the process of adding more printf-like information to library error reporting. HGOTO_ERROR() and HDONE_ERROR() macros can now use the last parameter (a string) like a printf() formatting string and pass extra parameters with additional information. (For example, see the HGOTO_ERROR macros in H5FD_sec2_read() in src/H5FDsec2.c) Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17140] Description:Quincey Koziol2009-07-021-9/+53
| | | | | | | | | | | | | | | | | | | | | | Migrate "new style" func enter macros (BEGIN_FUNC/THROW/CATCH/END_FUNC) into common header files, so that other packages can use them. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16869] Description:Quincey Koziol2009-04-281-1/+1
| | | | | | | | | Reduce overhead for func enter/leave & error handling macros. (Reduces object code size by ~20% for production/~10% for debug, with gcc) Tested on: Mac OS X/32 10.5.6 (amazon) (Too minor to require h5committest)
* [svn-r15549] Description:Quincey Koziol2008-08-281-4/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | Initial checkin of extensible array data structure prototype code and regression tests. Initial definitions for revised FUNC_ENTER/LEAVE and error reporting macros, which are being vetted in the extensible array code. Minor warning and formatting cleanups in other sections of code. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r14097] Description:Quincey Koziol2007-08-211-33/+2
| | | | | | | | | | | | | First real use of API versioning code, H5E routines switched to use new API versioning scheme. Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r13648] Description:Quincey Koziol2007-04-121-20/+16
| | | | | | | | | | Rename new error handling API routines from H5E<foo>_stack() to H5E<foo>2(). Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r12345] Purpose: Codes for backward compatibility.Raymond Lu2006-05-121-1/+1
| | | | | | | | | | Description: Function prototype H5E_walk_t and structure H5E_error_t wasn't backward compatible. Solution: Make them compatible with v1.6 and provide new definitions of H5E_walk_stack_t and H5E_error_stack_t. Platforms tested: fuss and h5committest.
* [svn-r11245] Purpose:Quincey Koziol2005-08-131-1/+1
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Trim trailing whitespace, which is making 'diff'ing the two branches difficult. Solution: Ran this script in each directory: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11196] Purpose:Quincey Koziol2005-08-041-1/+1
| | | | | | | | | | | | Code tweak Description: Add in a couple of minor changes from Elena's version of pushing the system error information on the error stack. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11195] Purpose:Albert Cheng2005-08-041-0/+20
| | | | | | | | | | | | | | | Feature. Description: Added HSYS_ERROR macro to retrieve and push system error message to the error stack. Added the related H5E_SYSERRSTR error code. This allows system error messages be shown to users too. Thus give a better explanation of what the errors are. Platforms tested: h5committested.
* [svn-r9234] Purpose:Quincey Koziol2004-09-091-1/+5
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Tweak recent "forward compatibility" changes to the H5E* API (which allowed for the old H5E API functions to remain unchanged) by allowing for the error stack callback function (H5E_auto_t) to also remain unchanged from the 1.6 branch. This required changing the H5E{get|set}_auto routines to have the old style H5E_auto_t type (which didn't have a stack ID parameter) and the new H5E{get|set}_auto_stack routines to have a newer "H5E_auto_stack_t" type (which has a stack ID parameter). This should make the H5E API changes as forwardly compatible as possible. One side-affect of this change was that it was impossible to determine if the current auto error callback was the old style (H5E_auto_t) or the new style (H5E_auto_stack_t) of callback, so a new API function (H5Eauto_is_stack) was adde to query this. Platforms tested: FreeBSD 4.10 (sleipnir) IRIX64 6.5 (modi4) h5committest
* [svn-r9183] Purpose: New featureRaymond Lu2004-09-011-3/+3
| | | | | | | | | | | | Description: Restore 6 old error API functions back to the library to be backward compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto, H5Eget_auto. These functions do not have error stack as parameter. Solution: Internally, these functions use default error stack. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r8791] Purpose: Rewrote metadata cache (H5AC.c, etc.) to improve ↵John Mainzer2004-07-021-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | performance. Description: Replaced the old metadata cache with a cache with a modified LRU replacement policy. This should improve the hit rate. Solution: Since we want to flush cache entries in increasing address order, I used the threaded binary B-tree code to store the cache entries. There is a fair bit of overhead here, so we may want to consider other options. While the code is designed to allow the support of other replacement algorithms, at present, only a modified version of LRU is supported. The modified LRU algorithm requires that a user selectable portion of the cache entries be clean. The clean entries are evicted first when writes are not permitted. If the pool of clean entries is used up, the cache grows beyond its user specified maximum size. The cache can also exceed its maximum size if the combined size of the protected (or locked) entries exceeds the maximum size of the cache. Platforms tested: eirene (serial, parallel, fp), h5committested Misc. update:
* [svn-r7364] Purpose:Quincey Koziol2003-08-141-1/+1
| | | | | | | | | | | Code cleanup Description: Ran lint over code & cleaned up warnings. Platforms tested: FreeBSD 4.8 (sleipnir) too small of changes to require h5committest
* [svn-r7355] Purpose:Quincey Koziol2003-08-131-141/+0
| | | | | | | | | | | | | | | | | | | | | | Code cleanup, etc. Description: Previously (in versions prior to 1.7), there were two locations to modify when an error was added to the library. Now, with the new error API, there were four. Solution: Created a single text file (src/H5err.txt) and a perl script (bin/make_err) which uses the text file to automatically create header files that are included in appropriate places in the library. This means that there is only one file (src/H5err.txt) which needs to be modified when a new error code is added to the library. The automatically generated headers depend on this file and the makefiles will take care of running the perl script to regenerate them when the text file changes, so no user action is required when a new error is added. Platforms tested: h5committested
* [svn-r7347] Purpose:Quincey Koziol2003-08-121-18/+1
| | | | | | | | | | | | | | | | Code cleanup & bug fix Description: Clean up code, adding error checking where appropriate Fix a number of routines which were clearing the default error stack before checking some information about that stack. Set the version # of the library correctly when it is registered. Platforms tested: FreeBSD 4.8 (sleipnir) h5committested
* [svn-r7298] Purpose:Quincey Koziol2003-08-081-38/+15
| | | | | | | | | | | | | Code cleanup & bug fix Description: Refactor code to clean up Corrected several bugs, including problems with library termination and thread-safete, etc. Platforms tested: h5committested
* [svn-r7265] *** empty log message ***Raymond Lu2003-07-261-194/+154
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* [svn-r7263] Purpose: bug fix for C++ caused by new error apiRaymond Lu2003-07-251-23/+0
| | | | | | | Description: one variable was left out from checkin yesterday Platforms tested: RH 8 with C++
* [svn-r7262] Purpose: Bug fix for C++ caused by new error API.Raymond Lu2003-07-251-4/+0
| | | | Platforms tested: h5committested
* [svn-r7256] Purpose: gradual checkin for error apiRaymond Lu2003-07-231-118/+159
| | | | Platforms tested: RH 8(simple checkin)
* [svn-r7244] Purpose: gradual checkin for error APIRaymond Lu2003-07-221-0/+14
| | | | Platforms tested: h5committest
* [svn-r7241] Purpose: Gradual checkin for error APIRaymond Lu2003-07-181-1/+10
| | | | | | Platforms tested: h5committest, RH 8 Misc. update:
* [svn-r7228] Purpose: Gradual checkin for error APIRaymond Lu2003-07-151-0/+4
| | | | Platforms tested: RH 8
* [svn-r7226] Purpose: Bug fix for error API.Raymond Lu2003-07-151-0/+2
| | | | | | | Description: gradual checkin Platforms tested: platinum, baldric
* [svn-r7225] Purpose: error API gradual checkinRaymond Lu2003-07-141-9/+23
| | | | Platforms tested: RH 8; c and c++
* [svn-r7214] Purpose:Quincey Koziol2003-07-121-109/+124
| | | | | | | | | | | | Code cleanup/bug fix Description: Clean up code a bit and make hid_t's for error class to use the same scheme as predefined datatype hid_t's. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ h5committest
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