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* [svn-r7265] *** empty log message ***Raymond Lu2003-07-261-311/+129
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* [svn-r7262] Purpose: Bug fix for C++ caused by new error API.Raymond Lu2003-07-251-108/+237
| | | | Platforms tested: h5committested
* [svn-r7256] Purpose: gradual checkin for error apiRaymond Lu2003-07-231-116/+111
| | | | Platforms tested: RH 8(simple checkin)
* [svn-r7244] Purpose: gradual checkin for error APIRaymond Lu2003-07-221-1/+3
| | | | Platforms tested: h5committest
* [svn-r7241] Purpose: Gradual checkin for error APIRaymond Lu2003-07-181-2/+7
| | | | | | Platforms tested: h5committest, RH 8 Misc. update:
* [svn-r7228] Purpose: Gradual checkin for error APIRaymond Lu2003-07-151-0/+5
| | | | Platforms tested: RH 8
* [svn-r7226] Purpose: Bug fix for error API.Raymond Lu2003-07-151-0/+2
| | | | | | | Description: gradual checkin Platforms tested: platinum, baldric
* [svn-r7225] Purpose: error API gradual checkinRaymond Lu2003-07-141-8/+28
| | | | Platforms tested: RH 8; c and c++
* [svn-r7214] Purpose:Quincey Koziol2003-07-121-25/+20
| | | | | | | | | | | | Code cleanup/bug fix Description: Clean up code a bit and make hid_t's for error class to use the same scheme as predefined datatype hid_t's. Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ h5committest
* [svn-r7212] Purpose: New error API design is being checked gradually.Raymond Lu2003-07-111-0/+177
| | | | Platforms tested: RH 8
* [svn-r7186] Purpose:Quincey Koziol2003-07-091-1/+2
| | | | | | | | | | | Code cleanup Description: More tweaks to clean up warnings from lint. Platforms tested: FreeBSD 4.8 (sleipnir) not major enough to h5committest
* [svn-r6956] Purpose:Quincey Koziol2003-06-041-0/+1
| | | | | | | | | | | | Code cleanup Description: Add another error code... Platforms tested: FreeBSD 4.8 (sleipnir) w/C++ FreeBSD 4.8 (sleipnir) w/parallel h5committested
* [svn-r6825] Purpose:Quincey Koziol2003-05-071-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | New feature/enhancement Description: Chunked datasets are handled poorly in several circumstances involving certain selections and chunks that are too large for the chunk cache and/or chunks with filters, causing the chunk to be read from disk multiple times. Solution: Rearrange raw data I/O infrastructure to handle chunked datasets in a much more friendly way by creating a selection in memory and on disk for each chunk in a chunked dataset and performing all of the I/O on that chunk at one time. There are still some scalability (the current code attempts to create a selection for all the chunks in the dataset, instead of just the chunks that are accessed, requiring portions of the istore.c and fillval.c tests to be commented out) and performance issues, but checking this in will allow the changes to be tested by a much wider audience while I address the remaining issues. Platforms tested: h5committested, FreeBSD 4.8 (sleipnir) serial & parallel, Linux 2.4 (eirene)
* [svn-r6606] Purpose:Quincey Koziol2003-04-091-1/+8
| | | | | | | | | | | | | | | | | New feature Description: Added new error descriptions. Solution: Platforms tested: FreeBSD 4.8 (sleipnir) w/szip Linux 2.4 (sleipnir) w/szip Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/szip, FORTRAN & parallel Misc. update:
* [svn-r6423] Purpose:Bill Wendling2003-02-211-1/+2
| | | | | | | | | Update Description: Added support for the allocation and freeing of space in the file. This information is kept on the Server. Platforms tested: Linux & Modi4
* [svn-r6336] Purpose:Bill Wendling2003-01-271-1/+2
| | | | | | | | | | | | | | | Update Description: This is the first conversion of the FPHDF5 code to be a metadata cache. There's an extra error message. I rewrote the sync/change code to be read metadata/write metadata instead. I still need to hook these changes into the HDF5 code so that it looks at the SAP first before checking the file for metadata. Platforms tested: Linux
* [svn-r6269] Purpose:Quincey Koziol2003-01-131-5/+5
| | | | | | | | | | | | | Code cleanup Description: Various code cleanups to allow the development branch to be compiled with a C++ compiler (i.e. CC=g++ ) Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) C++
* [svn-r6252] Purpose:Quincey Koziol2003-01-091-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Lots of performance improvements & a couple new internal API interfaces. Description: Performance Improvements: - Cached file offset & length sizes in shared file struct, to avoid constantly looking them up in the FCPL. - Generic property improvements: - Added "revision" number to generic property classes to speed up comparisons. - Changed method of storing properties from using a hash-table to the TBBT routines in the library. - Share the propery names between classes and the lists derived from them. - Removed redundant 'def_value' buffer from each property. - Switching code to use a "copy on write" strategy for properties in each list, where the properties in each list are shared with the properties in the class, until a property's value is changed in a list. - Fixed error in layout code which was allocating too many buffers. - Redefined public macros of the form (H5open()/H5check, <variable>) internally to only be (<variable>), avoiding innumerable useless calls to H5open() and H5check_version(). - Reuse already zeroed buffers in H5F_contig_fill instead of constantly re-zeroing them. - Don't write fill values if writing entire dataset. - Use gettimeofday() system call instead of time() system when checking the modification time of a dataset. - Added reference counted string API and use it for tracking the names of objects opening in a file (for the ID->name code). - Removed redundant H5P_get() calls in B-tree routines. - Redefine H5T datatype macros internally to the library, to avoid calling H5check redundantly. - Keep dataspace information for dataset locally instead of reading from disk each time. Added new module to track open objects in a file, to allow this (which will be useful eventually for some FPH5 metadata caching issues). - Remove H5AC_find macro which was inlining metadata cache lookups, and call function instead. - Remove redundant memset() calls from H5G_namei() routine. - Remove redundant checking of object type when locating objects in metadata cache and rely on the address only. - Create default dataset object to use when default dataset creation property list is used to create datasets, bypassing querying for all the property list values. - Use default I/O vector size when performing raw data with the default dataset transfer property list, instead of querying for I/O vector size. - Remove H5P_DEFAULT internally to the library, replacing it with more specific default property list based on the type of property list needed. - Remove redundant memset() calls in object header message (H5O*) routines. - Remove redunant memset() calls in data I/O routines. - Split free-list allocation routines into malloc() and calloc()- like routines, instead of one combined routine. - Remove lots of indirection in H5O*() routines. - Simplify metadata cache entry comparison routine (used when flushing entire cache out). - Only enable metadata cache statistics when H5AC_DEBUG is turned on, instead of always tracking them. - Simplify address comparison macro (H5F_addr_eq). - Remove redundant metadata cache entry protections during dataset creation by protecting the object header once and making all the modifications necessary for the dataset creation before unprotecting it. - Reduce # of "number of element in extent" computations performed by computing and storing the value during dataspace creation. - Simplify checking for group location's file information, when file has not been involving in file-mounting operations. - Use binary encoding for modification time, instead of ASCII. - Hoist H5HL_peek calls (to get information in a local heap) out of loops in many group routine. - Use static variable for iterators of selections, instead of dynamically allocation them each time. - Lookup & insert new entries in one step, avoiding traversing group's B-tree twice. - Fixed memory leak in H5Gget_objname_idx() routine (tangential to performance improvements, but fixed along the way). - Use free-list for reference counted strings. - Don't bother copying object names into cached group entries, since they are re-created when an object is opened. The benchmark I used to measure these results created several thousand small (2K) datasets in a file and wrote out the data for them. This is Elena's "regular.c" benchmark. These changes resulted in approximately ~4.3x speedup of the development branch when compared to the previous code in the development branch and ~1.4x speedup compared to the release branch. Additionally, these changes reduce the total memory used (code and data) by the development branch by ~800KB, bringing the development branch back into the same ballpark as the release branch. I'll send out a more detailed description of the benchmark results as a followup note. New internal API routines: Added "reference counted strings" API for tracking strings that get used by multiple owners without duplicating the strings. Added "ternary search tree" API for text->object mappings. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} Other platforms/configurations tested? FreeBSD 4.7 (sleipnir) serial & parallel Solaris 2.6 (baldric) serial
* [svn-r6178] ./hdf5-devel/src/H5Epublic.hRobb Matzke2002-12-041-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: New Feature; Optimization; Clean-up (Merged from 1.4 branch) Description: There is no symbolic constant to pass to functions that take an optional object ID for when the caller wants to indicate no object ID. In the past the caller always passed a negative integer. GPFS performs poorly. The h5ls tool decides whether to list the file name in the output based on a compile-time choice, which isn't always optimal at run time. Solution: Added a symbolic constant H5I_INVALID_HID. Added code to tell the mmfsd of GPFS to forego byte range token prefetching. h5ls decides whether to print the file name at runtime based on the number of objects being listed. Platforms tested: SuSE Linux (arborea), gcc and mpich-1.2.4 SunOS (baldric), gcc 2002-12-03 22:51:43 Robb Matzke <matzke@arborea.spizella.com> *: Added H5E_FCNTL minor error number.
* [svn-r6077] Purpose:Quincey Koziol2002-11-121-0/+2
| | | | | | | | | | Code cleanup Description: Added some comments and made some minor code cleanups Platforms tested: minor change, only testing on FreeBSD 4.7 (sleipnir) w/parallel
* [svn-r6023] Purpose:Bill Wendling2002-10-231-19/+27
| | | | | | | | | | Feature Add Description: Added some error messages for the Flexible Parallel HDF5 stuff. Platforms tested: Arabica Eirene Modi4
* [svn-r5961] Purpose:Quincey Koziol2002-10-071-0/+1
| | | | | | | | New error code Description: Add a new error code for the generic properties to use. Platforms tested: FreeBSD 4.6 (sleipnir) (too small to need triple testing)
* [svn-r5931] MuQun Yang2002-09-201-8/+8
| | | | | | | | | | | | Purpose: __DLL__ is a keyword in some platforms and __DLL__ is also defined as a macro for windows DLL applications. That causes problems. Description: Solution: Use H5_DLL*** to replace __DLL***__ at all header files. Change the macro defination at H5api_adpt.h. Platforms tested: linux2.2.18smp, irix64, solaris 2.7 and windows 2000
* [svn-r5840] Purpose:Quincey Koziol2002-07-311-0/+2
| | | | | | | | | | | | | | Code cleanup Description: Created a new H5I function which combined the some of the functionality of H5I_get_type and H5I_object: H5I_object_verify. Using this new function in the library trims another ~200 lines of code off the library and makes the resulting binaries smaller and faster also. Platforms tested: FreeBSD 4.6 (sleipnir)
* [svn-r5783] Purpose:Quincey Koziol2002-07-121-1/+3
| | | | | | | | | | New code Description: Add a few new error messages. Platforms tested: FreeBSD 4.6 (sleipnir)
* [svn-r5573] Purpose:Quincey Koziol2002-06-101-0/+1
| | | | | | | | | | | Bug fix (#620) Description: Change slightly misleading error message when creating attribute with same name as existing attribute to something a bit more clear. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5471] Purpose:Quincey Koziol2002-05-291-1/+0
| | | | | | | | | | | | | | | | Code cleanup Description: Broke the FUNC_ENTER macro into several macros, with more specialized uses (which followup mail will describe). This was designed to move most/all of the checks which could be done at compile time to that point, instead of needlessly performing them (over & over :-) at run-time. This reduces the library's size (and thus staticly linked binaries) and has a minor speedup effect also. Platforms tested: IRIX64 6.5 (modi4) with parallel & FORTRAN enabled, and additional testing on FreeBSD and Solaris immediately after the checkin.
* [svn-r5135] Purpose:Albert Cheng2002-04-031-1/+2
| | | | | | | | | | | | | | | | | | | | | | Features. Description: Error stack used to report only hdf5 predefined error messages because it takes only static strings. Runtime defined messages were not pushed to the stack. Added the means and macros to push MPI error strings onto the hdf5 error stack. Added a new minor error class as H5E_MPIERR for this class of messages. H5Epulbic.h, H5E.c: Added H5E_MPIERR and its minor class description. H5Eprivate.h: Added HMPI_XXX macros to push MPI error strings to the stack. H5FDmpio.c: Changed couple places to use the new macros to test the new macros. A more through changes to make use of these new macros will be done later. Platforms tested: eirene (serial, parallel) modi4(parallel)
* [svn-r4586] Purpose:Quincey Koziol2001-11-021-0/+4
| | | | | | | | | | | | | | Code speedups, etc. Description: Bring in new algorithms and data structures for dealing with hyperslabs. This speeds up the hyperslab I/O for non-regular hyperslabs by a huge amount. Currently, the new API functions are ifdef'ed out, pending discussion and consensus approval. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r4324] Purpose:Quincey Koziol2001-08-101-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | New Features! Description: Start migrating the internal use of property lists in the library from the older implementation to the new generic property lists. Currently, only the dataset transfer property lists are migrated to the new architecture, all the rest of the property list types are still using the older architecture. Also, the backward compatibility features are not implemented yet, so applications which use dataset transfer properties may need to make the following changes: H5Pcreate(H5P_DATASET_XFER) -> H5Pcreate_list(H5P_DATASET_XFER_NEW) and H5Pclose(<a dataset transfer property list>) -> H5Pclose_list(id) This still may have some bugs in it, especially with Fortran, but I should be wrapping up those later today. Platforms tested: FreeBSD 4.4 (hawkwind)
* [svn-r3781] Purpose:Bill Wendling2001-04-051-2/+2
| | | | | | | | | | | | | | | | | | Update Description: Changed #include <hdf_file.h> construct to #include "hdf_file.h" so that the GNU compiler can more easily pick up the dependencies which it places in the .depend and Dependencies files. Also regenerated the Dependencies to go along with this. Platforms tested: Linux
* [svn-r3304] Purpose:Quincey Koziol2001-01-181-1/+0
| | | | | | | | Code update Description: Remove ragged array code & tests from library before release. Platforms tested: FreeBSD 4.2 (hawkwind)
* [svn-r2806] ./hdf5/src/H5Epublic.hRobb Matzke2000-11-071-2/+2
| | | | | * 2000-11-07 Robb Matzke <matzke@llnl.gov> Reindented a couple of comments.
* [svn-r2220] Added a major error number for TBBT treesQuincey Koziol2000-05-081-1/+2
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* [svn-r2088] * 2000-01-26Robb Matzke2000-04-071-2/+2
| | | | | | ** src/H5Epublic.h Removed `do{...}while(0)' from H5E_BEGIN/END_TRY macros to get rid of a warning about the constant expression.
* [svn-r1788] Converted all the VFL drivers except for the stdio and multi ↵Quincey Koziol1999-10-231-1/+4
| | | | | | drivers back into the "internal" HDF5 coding standard.
* [svn-r1783] Added public H5Epush... routines and macros.Quincey Koziol1999-10-201-0/+24
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* [svn-r1621] Added GASS driver. Coded by Saurabh Bagchi, bagchi@uiuc.edu.Albert Cheng1999-08-311-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Minor changes done to test/gass_xxx.c so that they print the test skip message when GASS driver is not available. This change is the implementation of GASS within HDF5-1.3 (HDF5 with Virtual File Layer). The GASS driver gives the facility of accessing HDF files on remote ftp servers. To use the GASS driver, the option --with-gass=<GASS path> shoud be specified with configure. An example of the command line used to test the distribution was: ./configure --disable-shared --without-hdf4 --with-gass=/afs/ncsa/projects/hdf/v5/bagchi/globus/GLB/development/sparc-sun-solaris2.6_nothreads_standard_debug/include,/afs/ncsa/projects/hdf/v5/bagchi/globus/GLB/development/sparc-sun-solaris2.6_nothreads_standard_debug/lib --disable-parallel The user should change the path to point to his local GASS installation. Documentation about the features of GASS and the HDF-GASS design is available separately and till it is put up on the official web site, anyone interested may contact me. Test programs to read, write or append remote files have been provided in the test directory as "gass_read.c", "gass_write.c", "gass_append.c". The test programs have the ftp site to access #define-d at the top of the file which the user can change accordingly. ./src/H5Epublic. Added new error type for file close. ./src/H5F.c Added hooks for the GASS driver. ./src/H5public.h Added header files for GASS & Globus. ./src/Makefile.in Added dependancy on GASS driver in LIB_SRC. ./src/hdf5.h Included header file for GASS driver. ./src/H5FDgass.c [NEW] Routines for the GASS driver. ./src/H5FDgass.h [NEW] Header file for the GASS driver. ./test/Makefile.in Added dependancy on the gass test routines. ./test/gass_read.c File to test remote file reading using GASS. ./test/gass_write.c File to test remote file writing using GASS. ./test/gass_append.c File to test remote file appending using GASS.
* [svn-r1568] Changes since 19990730Robb Matzke1999-08-101-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- This extensive change is the virtual file layer implementation. I've ported and tested the sec2, family, and core drivers and only ported the mpio driver (Albert will test it). So if you need MPIO I would recommend sticking with the previous version for a while. You will get a few compile warnings about split and stdio drivers not being implemented and possibly tracing information not inserted in some of the drivers. You can safely ignore them but I plan to fix them. I'm still working on the split driver because I just realized that it needs a part of the VFL that isn't written yet. Documentation is being updated also because there were some minor changes (mostly just name changes). It should be available on my web site later this week. ./MANIFEST ./src/Makefile.in ./src/hdf5.h ./src/H5Flow.c [REMOVED] ./src/H5Fstdio.c [REMOVED] ./src/H5Fsec2.c [REMOVED] ./src/H5Fsplit.c [REMOVED] ./src/H5Fmpio.c [REMOVED] ./src/H5Ffamily.c [REMOVED] ./src/H5Fcore.c [REMOVED] ./src/H5MFpublic.h [REMOVED] ./src/H5FD.c [NEW] ./src/H5FDcore.c [NEW] ./src/H5FDcore.h [NEW] ./src/H5FDfamily.c [NEW] ./src/H5FDfamily.h [NEW] ./src/H5FDmpio.c [NEW] ./src/H5FDmpio.h [NEW] ./src/H5FDprivate.h [NEW] ./src/H5FDpublic.h [NEW] ./src/H5FDsec2.c [NEW] ./src/H5FDsec2.h [NEW] Removed/added files for virtual file layer. ./bin/trace ./src/H5.c Removed unused public datatypes and added new VFL public datatypes. Changed an error message. ./config/BlankForm ./config/dec-flags ./config/gnu-flags ./config/hpux10.20 ./config/hpux9.03 ./config/irix5.x ./config/irix6.x ./config/solaris2.x ./config/unicosmk Removed the H5F_OPT_SEEK and H5F_LOW_DFLT constants from the configuration since they're no longer applicable. The default file driver is always the sec2 driver and it always optimizes calls to lseek() or lseek64(). ./config/depend.in C preprocessor errors generated during automatic dependency building are sent to /dev/null to prevent them from appearing twice in the make output. ./src/H5AC.c ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5Oattr.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Oshared.c ./src/H5T.c ./src/H5detect.c ./test/ohdr.c Changed H5F_ADDR_UNDEF to HADDR_UNDEF to be more consistent with the `haddr_t' datatype which is now a public type. ./src/H5D.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5Tconv.c ./test/cmpd_dset.c ./test/dsets.c ./test/overhead.c ./test/tselect.c ./test/tvltypes.c The H5P_DATASET_XFER constant was changed to H5P_DATA_XFER because the properties apply to all types of I/O operations, not just datasets. ./src/H5B.c ./src/H5Bprivate.h ./src/H5D.c ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5HG.c ./src/H5HL.c ./src/H5O.c ./src/H5R.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Smpio.c ./src/H5Spoint.c ./src/H5Sprivate.h ./test/big.c ./test/h5test.c ./test/istore.c ./testpar/t_dset.c ./testpar/t_file.c ./tools/h5debug.c ./tools/h5ls.c Modified to work with the virtual file layer by calling H5FD_* functions instead of H5F_low_* functions and by passing file access and data transfer properties by object ID instead of pointer. Changed H5D_transfer_t to H5FD_mpio_xfer_t since the COLLECTIVE vs. INDEPENDENT transfer mode is specific to the MPIO file driver. Moved MPIO-specific stuff into the MPIO driver. ./src/H5B.c ./src/H5D.c ./src/H5Fprivate.h The H5F_mpio_* private functions were renamed and placed in the H5FDmpio driver except those which appeared in H5Smpio.c. ./src/H5E.c ./src/H5Epublic.h Added major error number H5E_VFL for virtual file layer related errors. ./src/H5F.c ./src/H5Fprivate.h Changed the logic that controls whether the boot block is written. Instead of assuming that the first call to write the boot block is only to allocate space, I've added a function argument which makes this explicit. Changed the way files are compared so that a driver-defined comparison function can be called. Files which belong to different drivers are always considered different. Removed H5F_driver_t since file drivers are now identified by object ID instead of a special non-user-extendible datatype. Removed all the hard-coded low-level file properties which have been replaced by the various file drivers. ./src/H5I.c ./src/H5Iprivate.h Added the H5I_inc_ref() which was removed a few months ago since we finally have a use for it. ./src/H5Ipublic.h Added the H5I_VFL object ID type to identify file drivers in the virtual file layer. ./src/H5MF.c ./src/H5MFprivate.h Moved all the allocation/deallocation code into the virtual file layer which allows file drivers to override much of it. ./src/H5P.c ./src/H5Ppublic.h Moved file driver-specific code into the various file driver files. The H5Pcopy() and H5Pclose() functions make calls into the virtual file driver to manage the memory for driver-specific file access and data transfer properties. ./src/H5private.h ./src/H5public.h The `haddr_t' type is now public. ./test/tfile.c Added a few more comments.
* [svn-r1418] Modified H5Tconvert to require a dataset transfer property ↵Quincey Koziol1999-07-031-0/+1
| | | | | | | | | | | | | list ID as the final parameter (so that VL datatypes have a way to pass in the custom memory allocation routines). Fixed a conversion bug when VL fields were part of a compound datatype that was causing the no-op conversion routine to be used instead of the vlen routine. Added the H5Pset_vlen_mem_manager and H5Pget_vlen_mem_manager routines to allow users to provide their own custom memory allocation routines for VL data read in from the file and reclaimed with H5Dvlen_reclaim. Finished coding on H5Dvlen_reclaim so it works now.
* [svn-r1051] changed the HDF5DLL and HDF5GLOBAL to __DLL__ and __DLLVAR__Patrick Lu1999-02-021-8/+8
| | | | also exported all globals and non static functions to the dll
* [svn-r1032] Changes since 19990118Robb Matzke1999-01-211-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5tools.c Strings are not converted to null-padding before being printed; they are printed with whatever byte values appear in the file. ./tools/h5ls.c Now able to display attribute data type and data. Added a `-f' or `--full' switch which causes the full name of each object to be displayed instead of just the base name. Added a `-r' or `--recursive' switch that recursively prints the contents of groups, avoiding cycles. More bulletproofing for non-printable characters in things like object names, attribute names, and comment strings. We don't want listing a file to send termal escape sequences because it's sometimes possible to execute commands that way. Since h5ls doesn't usually use quotes around object names we must sometimes escape space characters. External files are listed in a table to make the output less confusing. ./tools/h5tools.c ./tools/h5tools.h Changed h5dump() to h5dump_dset() and added h5dump_mem(). Also make h5dump_fixtype() public. ./test/dtypes.c Wrote some data to an attribute to test h5ls attribute printing. ./src/H5ACprivate.h ./src/H5Apublic.h ./src/H5Dprivate.h ./src/H5Dpublic.h ./src/H5Epublic.h ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Gprivate.h ./src/H5HLprivate.h ./src/H5Oprivate.h ./src/H5Ppublic.h ./src/H5RApublic.h ./src/H5Rpublic.h ./src/H5Spublic.h ./src/H5Tpkg.h ./src/H5Tpublic.h ./src/H5Vprivate.h ./src/H5Zpublic.h ./src/H5private.h ./src/H5public.h Reindented function prototypes after `HDF5API' was added. Also rewrapped long lines. ./src/H5Flow.c Added an `#ifdef WIN32' around an unused variable. ./src/H5api_adpt.h Removed extra carriage returns inserted by "broken" operating system. ./src/H5Dprivate.h ./src/H5Oprivate.h ./src/H5Vprivate.h ./src/H5private.h Removed extraneous inclusion of H5api_adpt.h since it's included in H5public.h which is included by everything. ./src/Makefile.in Added H5api_adpt.h to the list of public header files to fix broken `make install'.
* [svn-r1030] added necessary info to export functions to dllPatrick Lu1999-01-211-8/+8
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* [svn-r757] Added code for object references.Quincey Koziol1998-10-131-3/+4
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* [svn-r745] Changes since 19981002Robb Matzke1998-10-081-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./doc/html/H5.format.html ./src/H5HG.c Fixed a bug in the global heap that caused H5HG_read() to write past the end of the buffer in certain cases. ./test/big.c The test is skipped if hdf5 was configured with `--disable-hsizet'. ./src/H5Ofill.c Data type conversions are implemented for the fill value. ./src/H5.c Tracing prints one of H5P_FILE_CREATE, H5P_FILE_ACCESS, H5P_DATASET_CREATE, H5P_DATASET_XFER, or H5P_MOUNT instead of the more cryptic H5I_TEMPLATE_* constants. ./src/H5D.c Removed prototype for H5D_find_name(). ./src/H5I.c The GROUP_MASK and ID_MASK are both calculated from GROUP_BITS instead of being set by hand. We don't use the sign bit of hid_t; all valid hid_t values are positive so we can say things like `if ((file=H5Fopen(...))<0)'. Changed `(int)pow(2.0,x)' to `1<<x' so we don't have to worry about rounding. Fixed H5I_get_type() so it doesn't always fail an assertion. ./src/H5E.c ./src/H5Epublic.h Added minor error H5E_MOUNT ./src/H5F.c ./src/H5Fprivate.h Added H5Fmount() and H5Funmount(). Mounting and unmounting works as documented but some of the other things aren't implemented yet, the biggest being current working groups always acting on the root of the mount tree, and H5Fclose() closing the entire tree. The rest of the stuff will be added shortly... ./src/H5P.c ./src/H5Ppublic.h Added the H5P_MOUNT property list but haven't implemented any particular properties for it yet. ./src/H5Gstab.c Hard links across files return an error instead of failing an assertion.
* [svn-r733] Robb Matzke1998-10-011-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Changes since 19980930 ---------------------- ./MANIFEST ./doc/html/H5.format.html ./src/H5D.c ./src/H5Dprivate.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ofill.c [NEW] ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/Makefile.in Added fill values as documented in previous e-mails. They only work for chunked datasets so far. ./src/H5E.c ./src/H5Epublic.h ./src/H5P.c Changed H5E_TEMPLATE to H5E_PLIST. ./src/H5Omtime.c ./src/H5V.c Fixed a typo in a comment. ./src/H5Tconv.c Fixed a bug in compound type conversions that caused an assertion to fail.
* [svn-r654] Fixed last bug (hah! ;-) for beta release, changed H5Gget_stat to ↵Quincey Koziol1998-09-021-1/+1
| | | | | | H5Gget_objinfo and renamed internal functions to match up with the renamed API functions.
* [svn-r641] Changed function names for beta release.Quincey Koziol1998-09-011-1/+1
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* [svn-r620] Changes since 19980825Robb Matzke1998-08-271-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5R.c [NEW] ./src/H5Rprivate.h [NEW] ./src/H5Rpublic.h [NEW] ./src/Makefile.in ./src/hdf5.h ./test/ragged.c [NEW] Preliminary support for 2d ragged arrays for Mark Miller and Jim Reus. Not fully implemented yet. The test is not actually part of `make test' because we still have some memory problems. ./src/H5E.c ./src/H5Epublic.h Added H5E_RAGGED as a major error number. ./bin/release Checks the MANIFEST file against `svf ls' on systems that have it. ./bin/trace Fixed a bug that caused arguments of type `void *x[]' to not be handled. ./src/H5.c Removed unused variables and changed a couple types to fix compiler warnings. Added tracing support for ragged array object ID's and arrays of pointers. ./src/H5D.c H5Dcreate() will complain if either of the property lists are invalid (instead of using the default). ./src/H5D.c ./src/H5Dprivate.h Split H5Dget_space() into an API and internal function so it can be called from the new ragged array layer. ./src/H5Fistore.c Fixed warnings about unsigned vs. signed comparisons. ./src/H5Flow.c Fixed a warning about a variable being shadowed in the MPI-IO stuff. ./src/H5Iprivate.h ./src/H5Ipublic.h Added the H5_RAGGED atom group. ./src/H5Shyper.c Fixed some freeing-free-memory errors that resulted when certain arrays were freed but the pointers were left in the data structures. I simply set the pointers to null after they were freed. ./src/H5Sprivate.h ./src/H5Sselect.c Split the H5Sselect_hyperslab() function into an API and a private function so it could be called from the ragged array layer. Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to get rid or compiler warnings. ./src/H5Tconv.c Removed a misleading comment. ./test/bittests.c Fixed a warning about a printf(). ./test/cmpd_dset.c Fixed warnings about unused variables because of test #11 being commented out. ./bin/trace Shortened the right margin for the output to allow room for the `);' at the end of the TRACE() macros.
* [svn-r569] Changes since 19980731Robb Matzke1998-08-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release Added ./Makefile to the distribution again -- it got lost in the changes last week although it isn't all that important a file since it gets clobbered by configure anyway. ./bin/trace ./doc/html/Filters.html ./doc/html/H5.format.html ./doc/html/H5.user.html ./src/H5.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ocomp.c ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c ./src/H5Zprivate.h ./src/H5Zpublic.h ./src/hdf5.h ./test/dsets.c ./tools/h5ls.c Added the data filter pipeline, a generalization of the compression stuff which allows things like checksums, encryption, compression, performance monitoring, etc. See ./doc/html/Filters.html for details -- it replaces the Compression.html doc. ./src/H5T.c Cleaned up debugging output. ./config/linux Added checks for egcs and pgcc and changed optimization flags for the compilers. ./src/H5G.c ./tools/h5dump.c Fixed compiler warnings in these files and others. ./configure.in ./src/H5private.h ./test/mtime.c Added a check for difftime() and defined HDdifftime() to do something else on systems that don't have difftime().
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