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* Normalization with vol_integration (misc internal and datatype)Dana Robinson2018-09-201-81/+90
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* Removed 'VOL' versions of FUNC_ENTER macros as well as empty functionsDana Robinson2018-09-181-10/+17
| | | | orginally intended to support the full SWMR feature.
* Normalization with vol_integration branch.Dana Robinson2018-06-071-1/+1
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* Minor warning cleanup while working on VOL issues.Dana Robinson2018-04-061-1/+1
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* Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-04-011-112/+9
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| * Created internal functions for a couple of H5F calls.Dana Robinson2018-03-301-248/+14
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* | Remove redundant 'is_collective' parameter from H5CX_set_loc.Quincey Koziol2018-03-271-3/+3
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* | Cleanup API context function usage.Quincey Koziol2018-03-191-117/+19
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* | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-29/+103
|\ \ | |/ | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Enhancement to the tool h5clear (HDFFV-10360)Vailin Choi2018-03-121-7/+87
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| * Changes made based on code reviews.Vailin Choi2018-01-121-8/+10
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| * Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-12-081-93/+74
| |\ | | | | | | | | | Merge from develop.
| * \ (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-251-434/+278
| |\ \ | | | | | | | | | | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
| * | | Initial checkin for library version boundsVailin Choi2017-10-031-16/+10
| | | | | | | | | | | | | | | | Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
* | | | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-298/+185
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* | | Normalization with VOL integration branch.Dana Robinson2017-11-301-93/+74
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* | Remove tabsAllen Byrne2017-11-081-417/+277
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* | Moved the 'cache image + SWMR' check from H5Fcreate/open to H5F_open.Dana Robinson2017-10-191-17/+1
|/ | | | Prep for the VOL merge.
* Style cleanups and misc. bugfixes discovered during full SWMR development.Quincey Koziol2017-09-231-1/+5
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Minor style cleanupsQuincey Koziol2017-03-221-4/+3
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* Revert "Switch h5clear for cache images to use existing ↵Quincey Koziol2017-03-221-0/+41
| | | | | | H5Pget_cache_image_config()" This reverts commit dd5105fc9912c77f6d6074700d83e5e8282e86c9.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-1/+81
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* Bring changes to I/O parameters from page_buffering branch.Quincey Koziol2017-03-131-11/+13
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* Review changes to closing files on error in H5Fcreate.Quincey Koziol2017-01-311-41/+15
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* Cache image feature and testingQuincey Koziol2017-01-291-1/+91
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* Switch list lengths to unsigned integers (to align better w/cache image merge)Quincey Koziol2017-01-281-1/+1
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-4/+236
| | | | and the tool and API wrappers will be coming in over the weekend.
* Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-291-0/+97
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| * Bring over another batch (hopefully the last) of non-SWMR "normalization"Quincey Koziol2016-11-291-0/+97
| | | | | | | | changes from the revise_chunks branch.
* | Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-261-1/+1
|/ | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
* Add public H5F* routines for cache logging.Quincey Koziol2016-11-041-0/+99
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* [svn-r29924] Description:Quincey Koziol2016-05-121-0/+70
| | | | | | | | Bring h5format_convert tool from revise_chunks branch to trunk. Tested on: MacoSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29842] Description:Quincey Koziol2016-04-301-24/+24
| | | | | | | | | Bring [appropriate portions of] r29811, 29813, 29826, 29830, 29831 from revise_chunks branch to the trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29548] Minor normalization w/ trunk in preparation for big merge.Dana Robinson2016-03-241-1/+0
| | | | | | Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1 autotools serial autotools parallel (MPICH 3.1.4)
* [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configureDana Robinson2016-02-221-9/+6
| | | | | | | | | | | | external dataset storage path behavior. This check-in fixes a bug in the original check-in where the external path stored in the file struct was not copied on reopen causing subsequent dataset operations to fail. Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 autotools serial w/ fortran and C++ autotools parallel (MPICH 3.1.4) w/ fortran
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-13/+13
| | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
* [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-9/+9
| | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* [svn-r28916] Description:Quincey Koziol2016-01-151-11/+7
| | | | | | | | Normalize against incoming changes from the phdf5_metadata_opt branch. Tested on: MacOSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r28894] Description:Quincey Koziol2016-01-141-4/+6
| | | | | | | | Normalize against changes on phdf5_metadata_opt branch to trunk Tested on: MacoSX/64 10.11.2 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r27768] Description:Quincey Koziol2015-09-141-50/+20
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27144] Description:Quincey Koziol2015-06-031-0/+1
| | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27075] Description:Quincey Koziol2015-05-151-1/+1
| | | | | | | | Clean up H5F interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r26986] Removed H5F_ACC_DEBUG and H5FD_DEBUG functionality.Dana Robinson2015-04-301-5/+5
| | | | | | | | | | | | The H5F_ACC_DEBUG symbol remains but has been defined to zero and has been listed as deprecated. Fixes: HDFFV-1074 Tested on: h5committest 32-bit Linux w/ C++ and Fortran and multi VFD 32-bit Linux w/ C++ and Fortran and multi VFD (no deprec symbols)
* [svn-r25929] Description:Quincey Koziol2014-12-291-3/+8
| | | | | | | | | | Clean up EOF code within library and add 'mem_type' parameter to 'get_eof' VFD callback, to avoid various ambiguous situations, particularly with the multi VFD. (Supports changes for 'avoid_truncate' feature also) Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel h5committest forthcoming
* [svn-r25496] Description:Quincey Koziol2014-07-301-6/+11
| | | | | | | | | Merge 64-bit ID changes from branch to trunk. (Plus a few minor cleanups that aren't on the branch) Tested on: Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN (h5committested on branch already for a week)
* [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-1926/+37
| | | | tested with h5committest.
* [svn-r25097] Description:Quincey Koziol2014-04-251-1/+1
| | | | | | | | | | | Make progress toward moving from DXPL IDs to property list structures within the library. Also move the signature location code from the H5F package to the H5FD package, where it's a better fit. Also, clean up some more compiler warnings along the way. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r25092] Description:Quincey Koziol2014-04-241-2/+15
| | | | | | | | | | More migration to using H5F_io_info_t pointers and away from using property list IDs internally. Also, clean up some compiler warnings in the cache code. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r25084] Description:Quincey Koziol2014-04-231-2/+2
| | | | | | | | | Begin process of migrating from using property list IDs internally to the library to using the internal generic property list data structure. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
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