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* Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,David Young2019-12-091-55/+60
| | | | | | | | including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and I share. Now I need to put this branch on a fork with a less confusing name than vchoi_fork!
* Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-1/+1
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-0/+10
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* Cleanups and normalizations against incoming page_buffering changes.Quincey Koziol2017-02-201-5/+9
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* More normalizations against incoming cache image branch.Quincey Koziol2016-12-291-22/+24
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* Changed the return type of H5Pget_driver_info() from void * toDana Robinson2016-11-051-4/+4
| | | | const void *. Fixes HDFFV-10017.
* Change file memory type for extending to default, and correct error inQuincey Koziol2016-11-031-3/+7
| | | | backward compatibility for multi VFD.
* Warning and whitespace cleanup.Quincey Koziol2016-11-031-9/+11
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* [svn-r30219] Description:Quincey Koziol2016-07-221-9/+15
| | | | | | | | | More warning cleaups: down to 770 warnings (from ~940) in 134 files (from 148), with 28 unique kinds of warnings (from 31). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30113] Description:Quincey Koziol2016-06-281-2/+2
| | | | | | | | Clean up warnings (from 2774 -> 1560, with my standard debug build) Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29715] Description:Quincey Koziol2016-04-161-11/+15
| | | | | | | | | Clean up coding to increment/decrement underlying FAPL for multi/split VFDs, to avoid copying property lists as much. Tested on: MacOSX/64 10.11.4 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-10/+2
| | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* [svn-r28626] Brought VFD-level file locking code over from revise_chunks.Dana Robinson2015-12-141-2/+99
| | | | | | | Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* [svn-r28204] Fix use of hbool_t in H5FDmulti (revert previous fix and use ↵Jerome Soumagne2015-10-231-3/+3
| | | | | | unsigned instead) Tested on: Sun OS 5.11/64 (emu)
* [svn-r28196] Fix use of hbool_t in H5FDmultiJerome Soumagne2015-10-231-2/+2
| | | | Tested on: Sun OS 5.11/64 (emu)
* [svn-r26986] Removed H5F_ACC_DEBUG and H5FD_DEBUG functionality.Dana Robinson2015-04-301-45/+2
| | | | | | | | | | | | The H5F_ACC_DEBUG symbol remains but has been defined to zero and has been listed as deprecated. Fixes: HDFFV-1074 Tested on: h5committest 32-bit Linux w/ C++ and Fortran and multi VFD 32-bit Linux w/ C++ and Fortran and multi VFD (no deprec symbols)
* [svn-r25929] Description:Quincey Koziol2014-12-291-38/+50
| | | | | | | | | | Clean up EOF code within library and add 'mem_type' parameter to 'get_eof' VFD callback, to avoid various ambiguous situations, particularly with the multi VFD. (Supports changes for 'avoid_truncate' feature also) Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel h5committest forthcoming
* [svn-r25881] Description:Quincey Koziol2014-12-101-66/+16
| | | | | | | | Minor code/comment cleanups, found while reviewing 'avoid truncate' code. Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel (Too minor to require h5committest)
* [svn-r25661] Update the default setting for the memb_addr array when use ↵Mohamad Chaarawi2014-10-031-1/+1
| | | | | | | | passes NULL to equally divide all the address space between all the members. Before there was one chunk of the address space not being used. tested h5committest, and multi vfd make check on jam.
* [svn-r25620] Fix a bug in multi VFD when the memb_addr in H5Pset_fapl_multi ↵Mohamad Chaarawi2014-09-251-1/+1
| | | | | | | | | | is passed as NULL. The library is supposed in that case to equally divide the address space among all members, but there was a bug causing an overflow in the assignment. tested with h5commitest
* [svn-r24030] Description:Quincey Koziol2013-08-191-120/+0
| | | | | | | | Clean up more compiler warnings. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc, C++ & FORTRAN (too minor to require h5committest)
* [svn-r23987] Merge r23939 from reduce_warning branch to trunkNeil Fortner2013-08-091-2/+0
| | | | | | | | | | | Tested: jam, koala, ostrich (h5committest) Log from r23939: Fix unused variables warnings in trunk Rename static functions in H5Adense.c, H5B2cache.c, H5Bcache.c Switch these functions to use FUNC_ENTER_STATIC* macros Tested: koala
* [svn-r23985] Merge commit 23937 from reduce_warning branchJerome Soumagne2013-08-091-0/+2
| | | | | | Remove unused param (src) and unused var (hl) warnings Tested on koala
* [svn-r23508] Removed some dead code that belonged to the multi dxpl ↵Dana Robinson2013-04-011-28/+0
| | | | | | | | | | | functions that were removed in HDF5 1.8.11. Tested on: jam w/ fortran & C++, tested with check-vfd I did not test on other platforms (h5committest) since there is nothing even remotely platform-specific here.
* [svn-r23366] Removed the H5Pset_dxpl_multi and H5Pget_dxpl_multi functions ↵Dana Robinson2013-03-181-144/+0
| | | | | | | | | | | | | | | from the library. The intended functionality for them was never fully implemented and they are fundamentally broken. The functions were removed from the C and C++ interfaces. They were not exported in the Fortran interface. Tested on: jam(c++/fortran/hl) I tested using check-vfd to ensure the multi VFD still works properly. There is no reason to test this on other machines or on parallel.
* [svn-r23223] Description:Quincey Koziol2013-02-041-4/+4
| | | | | | | | | Revert use of snprintf() for sprintf(), as it is not supported on Windows. (And file a bug, http://jira.hdfgroup.uiuc.edu/browse/HDFFV-8302, for the general problem) Tested: Mac OSX/64 10.8.2 (amazon)
* [svn-r23219] Description:Quincey Koziol2013-02-021-47/+63
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring reviewed changes from Coverity branch back to trunk (QK & JK): r20457: Coverity issue 691: return of H5duo could be negative. Fixed by using STDOUT_FILENO and redesign parse_command_line and main to cleanup file allocations. The output_file var is null when using stdout. In cleanup do not close output_file if NULL. r20510: Initialize ufid = -1 and predicate HDclose call on ufid != -1 r20511: Purpose: Fix coverity issue 1715 Description: Free "file" and nested data on failure in H5FD_core_open. r20512: Initialize ifid = -1 and predicate HDclose call on ifid != -1 r20514: Initialize h5fid = -1 and predicate HDclose call on h5fid != -1 r20516: Added else branch to the if (ret_value < 0) check. r20522: Addressed coverity issues 930-933, 850, 836, 835, 1307. All minor potential buffer overwrite bugs, or coverity errors. Fixed by replacing strcpy and sprintf with strncpy and snprintf. r20523: fixed coverity issues 68, 1120, 1116i r20524: Check H5Z_SZIP->encoder_present < 1 assuming 0 represents absence. r20601: Purpose: Fix coverity issues 1703-1705 Description: Modified the cleanup code in test_free in accum.c to reset allocated buffers to NULL after they are freed, and modified the error cleanup code to check if these buffers are NULL before freeing them. Also fixed some unrelated warnings in accum.c. r20602: Use HDsnprintf and HDstrncat r20603: Purpose: Fix coverity issues 808-809 Description: Modified test_core in vfd.c to check the returns from malloc, and keep track of whether points and check are allocated by setting them to NULL when they are not. Added code to free points and check on error if they are not NULL. Also fixed unrelated warnings in vfd.c. r20604: Use HDstrncpy. r20605: Use HDstrncpy and HDstrncat. r20606: Purpose: Fix coverity issue 807 Description: Modified long_compact in stab.c to keep track of whether objname is allocated by setting it to NULL when it is not. Added code to free objname on error if it is not NULL. r20607: Changed string function calls to use versions that specify the string length to fix coverity issues 832 and 839. Tested on: Mac OSX/64 10.8.2 (amazon) (Too minor to require h5committest)
* [svn-r22707] Description:Quincey Koziol2012-08-221-4/+4
| | | | | | | | | | Bring back some more cleanups from the plist_encode_decode branch, clean up some formatting and compiler errors, and add a few more property comparison routines that we've skipped implementing in the past. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22681] Description:Quincey Koziol2012-08-151-156/+251
| | | | | | | | Clean up file driver property handling, along with some misc. warnings. Tested on: Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe (h5committest upcoming)
* [svn-r22444] (1) fix for making MEM_GHEAP as MEM_DRAWVailin Choi2012-06-071-1/+2
| | | | | | | (2) fix to extend into the aggregator based on threshold (3) fix for the "flavor" logging problem (4) fix for test failures due to the above fixes (5) bug fix for h5stat when h5stat against a non-existing file
* [svn-r21031] This is a follow-up checkin for r21015 (bug fix for Issue ↵Raymond Lu2011-06-241-10/+10
| | | | | | 2594). According to Quincey's suggestion, I moved the EOAs for individual files from H5FD_multi_fapl_t to H5FD_multi_t struct. It's a more proper place. Tested on jam, koala, and heiwa.
* [svn-r21015] Bug fix for Issue 2598 - In v1.6 library, there was EOA for the ↵Raymond Lu2011-06-221-0/+22
| | | | | | | | | | | | | whole MULTI file saved in the super block. We took it out in v1.8 library because it's meaningless for the MULTI file. v1.8 library saves the EOA for the metadata file, instead. But this caused some backward compatibility problem. v1.8 library couldn't open the file created with v1.6 library. I fixed the problem by checking the EOA value to detect the file created with v1.6 library. Tested on jam, koala, and heiwa.
* [svn-r20588] Description:Quincey Koziol2011-04-211-5/+5
| | | | | | | | | Clean up code a bit, move new "terminate" VFD callback to new position in H5FD_class_t struct. Tested on: Mac OS X/32 10.6.7 (amazon) w/debug & production (h5committest not required on this branch)
* [svn-r20587] Description:Quincey Koziol2011-04-211-0/+1
| | | | | | | | Initial commit of John Biddescomb's VFD & MPI tweaks. Tested on: None (yet) (h5committest not required for this branch)
* [svn-r17365] Description:Quincey Koziol2009-08-151-2/+0
| | | | | | | | | | | | | | | | | | | | Final merge of changes from sblock_mdc branch back to trunk. The superblock is now managed by the metadata cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16489] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-181-3/+3
| | | | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 Vista 32, VS2005, IVF101 XP32, Cygwin
* [svn-r15861] Description:Quincey Koziol2008-10-141-23/+40
| | | | | | | | | | | | | | | | | | | | | | | | Various bug fixes & cleanups with VFDs and file free space changes, along with cleaning up compiler warnings. Enable more VFDs (for 'make check-vfd' testing) for many tests. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15800] Description:Quincey Koziol2008-10-071-6/+58
| | | | | | | | | | | | | | | | | | | | | | | Bring file free space branch changes through r15795 into trunk, which includes a fair bit of code cleanup & rearrangement along with a couple of bug fixes also. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15628] Description:Quincey Koziol2008-09-161-2/+2
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15510] Description:Quincey Koziol2008-08-211-23/+27
| | | | | | | | Clean up warnings & formatting Tested on: Mac OS X/32 10.5.4 (amazon) More tests forthcoming
* [svn-r13648] Description:Quincey Koziol2007-04-121-27/+27
| | | | | | | | | | Rename new error handling API routines from H5E<foo>_stack() to H5E<foo>2(). Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13248] Description:Quincey Koziol2007-02-061-1/+0
| | | | | | | | | More progress on creation order for attribbutes - they are now basically working for "compact" attribute storage. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13139] Fixed the MULTI problem (Bug #731) that corrupted the data. ↵Raymond Lu2007-01-121-42/+121
| | | | | | | The problem came from the EOA for the whole MULTI file. It's taken out because it's meaningless for MULTI file. Instead, each individual file has its EOA.
* [svn-r13035] Fixed a small problem in Line 782 - buf[6] should be set to 0, too.Raymond Lu2006-12-081-0/+1
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* [svn-r13034] Description:Quincey Koziol2006-12-081-3/+3
| | | | | | | | Take out separate memory type in the file for SOHM objects and create aliases for existing memory types for SOHM use. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-131-4/+3
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12706] Description:Quincey Koziol2006-10-021-2/+2
| | | | | | | | | Clean up some of the warnings on 64-bit Linux... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) Too minor to require h5committest
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-1/+1
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
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