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* Fixed HDFFV-10214:Dana Robinson2017-05-191-4/+0
| | | | | | | | | | | | * Updated comments in the library to accurately reflect the semantics of the H5FD_FEAT_POSIX_COMPAT_HANDLE flag. * Removed the check for the POSIX compatible handle feature flag when determining if a VFD supports SWMR. Partial work for HDFFV-10197: * Added a new H5FD_FEAT_DEFAULT_VFD_COMPATIBLE feature flag that is set when a VFD creates output that is compatible with the default VFD. Will be used in the testing but might also be generally useful to users.
* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Minor code changes to address comments in pull requestmainzer2017-03-171-1/+1
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* Checkin of additions to cache image parallel test code andmainzer2017-03-161-8/+8
| | | | | | | | | | | | associated bug fixes. Also, modifications to H5PB_dest() to flush the page buffer before destroying the page buffer. This is necessary, as when persistant free space managers are enabled, the page buffer will typically contain dirty FSM data at page buffer destroy time. Tested serial/debug, serial/production, serial/check-vfd/debug, parallel/debug, parallel/production on Jelly.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-2/+110
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* Bring changes to I/O parameters from page_buffering branch.Quincey Koziol2017-03-131-57/+66
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* Align with incoming page buffering changes: minor cleanups, centralize removingQuincey Koziol2017-03-071-8/+3
| | | | entries from collective metadata read list
* Align w/incoming page buffering changes.Quincey Koziol2017-02-251-8/+8
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* Cleanups and normalizations against incoming page_buffering changes.Quincey Koziol2017-02-201-6/+9
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* Cache image feature and testingQuincey Koziol2017-01-291-1/+35
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* Bring file shutdown code from cache image branchQuincey Koziol2017-01-051-22/+158
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* More normalizations against incoming cache image branch.Quincey Koziol2016-12-291-1/+2
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* Updated the comment for the valgrind fix.Dana Robinson2016-12-071-3/+3
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* Fixed a valgrind problem in file shutdown exposed by the swmr.c test.Dana Robinson2016-12-071-3/+9
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-7/+149
| | | | and the tool and API wrappers will be coming in over the weekend.
* Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-291-38/+65
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| * Bring over another batch (hopefully the last) of non-SWMR "normalization"Quincey Koziol2016-11-291-38/+65
| | | | | | | | changes from the revise_chunks branch.
* | Merge branch 'develop' into eoc_valgrind_bugfixDana Robinson2016-11-261-0/+108
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| * Bring over support for retrying metadata cache entry loads, along with all theQuincey Koziol2016-11-201-0/+108
| | | | | | | | supporting metadata cache callback changes, etc.
* | Tentative fix for valgrind issues related to EoC.Dana Robinson2016-11-261-4/+19
|/ | | | | | | | | Adds /*out*/ parameters to H5O_close() and H5F_try_close() so that H5D/G_close() will know when H5O_close() has triggered a file close and thus the file struct is not reliable. Also removes the H5F_CLOSING() macro and related which were formerly used to check if the file was closing.
* Add missing retrieval of cache logging name, from revise_chunks.Quincey Koziol2016-11-041-0/+16
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* Add cache logging property and file pieces.Quincey Koziol2016-11-041-0/+8
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* Minor code cleanups.Quincey Koziol2016-11-031-7/+3
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* [svn-r30084] First pass at the evict-on-close feature.Dana Robinson2016-06-151-0/+16
| | | | | | | | | | The features is controlled via H5Pset/get_evict_on_close() and is currently enabled by default (it will be disabled by default in the final implementation). There is a bug in the code where the eviction of tagged metadata fails due to some of the metadata being dirty, resulting in error return values and test failures.
* [svn-r30075] Description:Quincey Koziol2016-06-141-1/+1
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29850] Description:Quincey Koziol2016-05-011-0/+40
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29842] Description:Quincey Koziol2016-04-301-25/+36
| | | | | | | | | Bring [appropriate portions of] r29811, 29813, 29826, 29830, 29831 from revise_chunks branch to the trunk. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29612] Description:Quincey Koziol2016-04-031-2/+9
| | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29088] - Add a test for retrieving the property values for the new ↵Mohamad Chaarawi2016-02-111-0/+2
| | | | | | | | | coll md functions. - ifdef some code that don't need to be built in parallel - more minor enhancements tested on bb-8 with parallel and serial
* [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-1/+41
|\ | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| * [svn-r29077] Description:Quincey Koziol2016-02-101-0/+30
| | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| * [svn-r28959] merge from trunk.Mohamad Chaarawi2016-01-221-4/+14
| |\ | |/ |/| | | renaming metadata dxpl properties.
| * [svn-r28851] merge from trunk.Mohamad Chaarawi2016-01-111-3/+4
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| * | [svn-r28649] - add new API to toggle collective metadata write.Mohamad Chaarawi2015-12-141-0/+2
| | | | | | | | | | | | | | | - set default to FALSE - fix some bugs.
| * | [svn-r28636] merge from trunk.Mohamad Chaarawi2015-12-141-5/+5
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| * \ \ [svn-r27929] merge from trunk.Mohamad Chaarawi2015-10-011-55/+23
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| * | | | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-0/+8
| | | | | | | | | | | | | | | | | | | | branch.
* | | | | [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-4/+14
| |_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* | | | [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-141-3/+4
| |_|/ |/| | | | | | | | | | | | | | | | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
* | | [svn-r28452] Description:Quincey Koziol2015-11-231-5/+5
| |/ |/| | | | | | | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* | [svn-r27811] Description:Quincey Koziol2015-09-161-22/+17
| | | | | | | | | | | | | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* | [svn-r27768] Description:Quincey Koziol2015-09-141-33/+6
|/ | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r27237] Description:Quincey Koziol2015-06-181-0/+8
| | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* [svn-r27207] use "closing" flag instead of always TRUE in the truncate call.Mohamad Chaarawi2015-06-151-1/+1
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* [svn-r27206] fix for HDFFV-9418. Mohamad Chaarawi2015-06-151-8/+9
| | | | | | | - Moving truncate to H5F_flush() where it was done a long time ago. - Add a second H5AC_flush() call after the truncate is done to make sure we write the correct EOA. tested with h5committest
* [svn-r27144] Description:Quincey Koziol2015-06-031-0/+63
| | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
* [svn-r27075] Description:Quincey Koziol2015-05-151-2/+2
| | | | | | | | Clean up H5F interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* [svn-r25929] Description:Quincey Koziol2014-12-291-1/+1
| | | | | | | | | | Clean up EOF code within library and add 'mem_type' parameter to 'get_eof' VFD callback, to avoid various ambiguous situations, particularly with the multi VFD. (Supports changes for 'avoid_truncate' feature also) Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel h5committest forthcoming
* [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-0/+2051
tested with h5committest.
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