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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-14/+68
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| * [svn-r29612] Description:Quincey Koziol2016-04-031-2/+9
| | | | | | | | | | | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29088] - Add a test for retrieving the property values for the new ↵Mohamad Chaarawi2016-02-111-0/+2
| | | | | | | | | | | | | | | | | | coll md functions. - ifdef some code that don't need to be built in parallel - more minor enhancements tested on bb-8 with parallel and serial
| * [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective ↵Mohamad Chaarawi2016-02-101-1/+41
| |\ | | | | | | | | | | | | | | | | | | | | | metadata optimizations. - rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library tested on bb-8 with parallel and serial.
| | * [svn-r29077] Description:Quincey Koziol2016-02-101-0/+30
| | | | | | | | | | | | | | | | | | | | | | | | Normalize against the trunk, in preparation for final merge. Tested on: MacOSX/64 10.11.3 (amazon) w/serial & parallel (h5committest not required on this branch)
| | * [svn-r28959] merge from trunk.Mohamad Chaarawi2016-01-221-4/+14
| | |\ | | |/ | |/| | | | renaming metadata dxpl properties.
| | * [svn-r28851] merge from trunk.Mohamad Chaarawi2016-01-111-3/+4
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| | * | [svn-r28649] - add new API to toggle collective metadata write.Mohamad Chaarawi2015-12-141-0/+2
| | | | | | | | | | | | | | | | | | | | - set default to FALSE - fix some bugs.
| | * | [svn-r28636] merge from trunk.Mohamad Chaarawi2015-12-141-5/+5
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| | * \ \ [svn-r27929] merge from trunk.Mohamad Chaarawi2015-10-011-55/+23
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| | * | | | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-0/+8
| | | | | | | | | | | | | | | | | | | | | | | | branch.
| * | | | | [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-4/+14
| | |_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
* | | | | [svn-r28715] - merge from trunkMohamad Chaarawi2015-12-211-8/+9
|\ \ \ \ \ | |/ / / / | | | | | | | | | | - fix farray, earray, and btree test to use correct function to retrieve internal file struct.
| * | | | [svn-r28646] Minor normalization with revise_chunks.Dana Robinson2015-12-141-3/+4
| | |_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also purged obsolete /*ARGSUSED*/ from the library. Tested on: Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1 serial only (these changes have been in revise_chunks for a long time)
| * | | [svn-r28452] Description:Quincey Koziol2015-11-231-5/+5
| | |/ | |/| | | | | | | | | | | | | | | | | | | Normalization changes against revise_chunks branch. Tested on: MacOSX/64 10.11.1 (amazon) w/serial & parallel (h5committest forthcoming)
* | | [svn-r27959] - merge from trunk (pre-VDS)Mohamad Chaarawi2015-10-051-34/+17
|\ \ \ | |/ / | | | | | | - fix VOL initialization and Native plugin registration with new FAPL changes
| * | [svn-r27811] Description:Quincey Koziol2015-09-161-22/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Refactor property list code to "deep copy" properties in the correct way, retraining the rest of the library to copy & release things correctly. This cleans up another batch of memory leaks, etc. within the library. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (h5committest forthcoming)
* | | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-33/+6
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| * | [svn-r27768] Description:Quincey Koziol2015-09-141-33/+6
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27286] merge from trunk.Mohamad Chaarawi2015-06-261-0/+8
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| * [svn-r27237] Description:Quincey Koziol2015-06-181-0/+8
| | | | | | | | | | | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* | [svn-r27208] merge from trunk.Mohamad Chaarawi2015-06-161-8/+72
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| * [svn-r27207] use "closing" flag instead of always TRUE in the truncate call.Mohamad Chaarawi2015-06-151-1/+1
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| * [svn-r27206] fix for HDFFV-9418. Mohamad Chaarawi2015-06-151-8/+9
| | | | | | | | | | | | | | - Moving truncate to H5F_flush() where it was done a long time ago. - Add a second H5AC_flush() call after the truncate is done to make sure we write the correct EOA. tested with h5committest
| * [svn-r27144] Description:Quincey Koziol2015-06-031-0/+63
| | | | | | | | | | | | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
* | [svn-r27090] merge from trunk.Mohamad Chaarawi2015-05-151-2/+2
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| * [svn-r27075] Description:Quincey Koziol2015-05-151-2/+2
| | | | | | | | | | | | | | | | Clean up H5F interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* | [svn-r25968] merge from trunk.Mohamad Chaarawi2015-01-091-1/+1
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| * [svn-r25929] Description:Quincey Koziol2014-12-291-1/+1
| | | | | | | | | | | | | | | | | | | | Clean up EOF code within library and add 'mem_type' parameter to 'get_eof' VFD callback, to avoid various ambiguous situations, particularly with the multi VFD. (Supports changes for 'avoid_truncate' feature also) Tested on: MacOSX/64 10.10.1 (amazon) w/serial & parallel h5committest forthcoming
* | [svn-r25612] merge from trunk.Mohamad Chaarawi2014-09-241-3/+0
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* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-101/+5
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25555] - rework the public H5VL wrappers to not use H5VL_t* and use a ↵Mohamad Chaarawi2014-08-261-2/+2
| | | | | | | | | | | | | | plugin hid_t instead - rework the private VL layer to use the class structure directly - some bug fixes
* | [svn-r25537] VOL framework changes.Mohamad Chaarawi2014-08-191-2/+2
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* | [svn-r25521] major rework of the internal setup of VOL plugins to make it moreMohamad Chaarawi2014-08-081-3/+17
| | | | | | | | | | | | | | symmetrical to VFDs and allow new functionality to be implemented later. + some Bug fixes
* | [svn-r25488] - fix bug with H5Fget_access_plist. need to set VOL and VOL ↵Mohamad Chaarawi2014-07-291-8/+13
| | | | | | | | | | | | | | info in property - add tests for H5Fis_accessible in vfd tests to make sure it works with different fapls. - fix bug in Log VFD driver.
* | [svn-r25485] remove UG from branch.Mohamad Chaarawi2014-07-281-1/+1
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* | [svn-r25482] - update is_accessible implementation to use fapl and pass it ↵Mohamad Chaarawi2014-07-241-2/+2
| | | | | | | | | | | | | | | | | | | | down to H5Fint.c - move is_HDF5 inside deprecated macros in H5Fpublic.h - move H5ES_status_t outside of H5VLpublic.h to H5ESpublic.h - rename public properties in H5VLpublic.h to H5VL_PROP_* to add more scoping - no need to include private if pkg is included in H5VLnative.c - rename plist_id to lapl_id in loc_params structs
* | [svn-r25471] merge from trunk and resolve conflicts.Mohamad Chaarawi2014-07-231-1/+41
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| * [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-0/+2051
| | | | tested with h5committest.
* [svn-r25464] more alignment with trunk.Mohamad Chaarawi2014-07-221-4/+3
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* [svn-r25463] more aligning with trunk.Mohamad Chaarawi2014-07-221-124/+125
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* [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-6/+18
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* [svn-r24593] merge from trunkMohamad Chaarawi2013-12-231-86/+103
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* [svn-r24311] change event queue to event stack (just variable names)Mohamad Chaarawi2013-10-171-2/+2
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* [svn-r24301] merge from trunk.Mohamad Chaarawi2013-10-161-19/+13
| | | | resolve conflicts, etc...
* [svn-r24208] Merge revisions through r24202 from trunk to vol branchNeil Fortner2013-09-271-1/+4
| | | | | | Tested: jam, koala, ostrich, platypus (h5committest) There are failures on platypus (cmake) that were present previously
* [svn-r24088] Merging r24044 through r24087Mohamad Chaarawi2013-08-301-1/+1
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* [svn-r23834] merge from trunk up to r23833.Mohamad Chaarawi2013-06-271-2/+4
| | | | Fixed several conflicts, mostly because calling API routines internally was removed from several places in the trunk.
* [svn-r23473] Update the VOL plugin callbacks with better async I/O support:Mohamad Chaarawi2013-03-281-2/+2
| | | | | | | | | | | | | | - change hid_t req in callbacks to void **req - change all callbacks to accept dxpl_ids (except dataset write and read which already do) - update all the private and public VL routines to accept a dxpl_id and event queue id - Add an async class for the VOL plugin with cancel, test, and wait request operations - add the external VOL log plugin test to the examples directory NOTE that async operations are still not provided by the HDF5 API, so all event queue IDs and requests passed to all plugins are NULL for now. Tested on jam.
* [svn-r22809] - bring in plist encode decode changes from trunkMohamad Chaarawi2012-09-251-0/+39
| | | | | - remove hardocded error comparing tests for now because those will fail - regenerate Makefile.in s due to conflicting versions of autotools
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