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* Committing clang-format changesgithub-actions2022-04-211-6/+6
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* Modifications to:vchoi2022-04-211-2/+12
| | | | | | | | | | | | A) Allow automatic generation of metadata file names for VDS support B) Allow VFD SWMR reader to open an existing HDF5 file either before the VFD SWMR writer has opened it or after it has closed. C) Remove the usage of H5P_FILE_ACCESS_ANY_VFD. D) Add H5FD_FEAT_SUPPORTS_VFD_SWMR feature flag. E) Do not map H5FD_MEM_GHEAP to H5FD_MEM_DRAW when vfd swmr IS enabled; map H5FD_MEM_GHEAP to H5FD_MEM_DRAW when vfd swmr is NOT enabled. For details regarding #A and #B above, see version 9 of the RFC.
* More normalization from developDana Robinson2021-05-071-1/+17
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* Updates license url and history docsDana Robinson2021-03-251-1/+1
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* Formats the source and updates the gcc warning pragmasDana Robinson2021-03-251-63/+45
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* Stop changing the type of global-heap storage to raw data before accessing theDavid Young2020-03-091-10/+2
| | | | | | | page buffer. Now variable-length (VL) data such as VL strings work with VFD SWMR. This change also makes the library more consistent in its treatment of global-heap storage, since it's always been allocated as metadata, not raw data.
* Instead of duplicating H5F_shared_block_write() and _read() wholesale inDavid Young2020-03-061-69/+2
| | | | H5F_block_write() and _read(), make the latter functions call the former.
* Merge all of my changes from merge-back-to-feature-vfd_swmr-attempt-1,David Young2019-12-091-4/+93
| | | | | | | | including the merge of `hdffv/hdf5/develop`, back to the branch that Vailin and I share. Now I need to put this branch on a fork with a less confusing name than vchoi_fork!
* Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-241-4/+2
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* Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-54/+16
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* Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-6/+7
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* Bring changes to I/O parameters from page_buffering branch.Quincey Koziol2017-03-131-32/+32
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* Switch list lengths to unsigned integers (to align better w/cache image merge)Quincey Koziol2017-01-281-1/+1
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* Bring SWMR support in to the main development branch. (Finally!) More testsQuincey Koziol2016-12-021-10/+54
| | | | and the tool and API wrappers will be coming in over the weekend.
* Bring over support for retrying metadata cache entry loads, along with all theQuincey Koziol2016-11-201-0/+43
| | | | supporting metadata cache callback changes, etc.
* [svn-r30104] Fixes evict-on-close feature by propagating globalDana Robinson2016-06-241-1/+1
| | | | | flush flag up the function call stack and not setting it during H5Dclose().
* [svn-r30075] Description:Quincey Koziol2016-06-141-0/+38
| | | | | | | | | | Bring object/dataset/group/named datatype features from revise_chunks branch to trunk. Also CMake support for h5format_convert and a bunch of misc. cleanups. Tested on: MacOSX/64 10.11.5 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29850] Description:Quincey Koziol2016-05-011-0/+45
| | | | | | | | | | Bring H5DOappend(), H5P[s|g]et_object_flush_cb, and H5P[s|g]et_append_flush from revise_chunks branch to trunk. Brings along updated metadata cache entry tagging, and the internal object flush routine. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
* [svn-r29057] added dxpl type checking when debug mode is enabled ↵Mohamad Chaarawi2016-02-071-4/+26
| | | | | | (H5_DEBUG_BUILD) tested on bb-8 with Serial and Parallel, debug and production builds.
* [svn-r27768] Description:Quincey Koziol2015-09-141-1/+1
| | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* [svn-r26837] Description:Quincey Koziol2015-04-171-0/+3
| | | | | | | | | | Separate allocating chunk on disk from inserting the chunk record into the index. This allows a "SWMR-safe" insert/update of chunks (the chunk is always allocated -> written -> inserted/updated in the index). Tested on: Mac OSX/64 10.10.2 (amazon) w/parallel & serial Linux/32 2.6.18 (jam) w/serial & parallel
* [svn-r25092] Description:Quincey Koziol2014-04-241-1/+7
| | | | | | | | | | More migration to using H5F_io_info_t pointers and away from using property list IDs internally. Also, clean up some compiler warnings in the cache code. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
* [svn-r25088] Description:Quincey Koziol2014-04-231-1/+8
| | | | | | | | | Introduce "file I/O info" struct, to hold file & dxpl pointers, and start propagating up through library. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest coming)
* [svn-r24476] Description:Quincey Koziol2013-11-301-1/+1
| | | | | | | | | Remove duplicate "intent" flags from top & shared file structures, leaving them only in the shared file structure. Tested on: Mac OSX/64 10.9.0 (amazon) w/gcc 4.8, both parallel & serial (too minor to require h5committest)
* [svn-r21919] Description:Quincey Koziol2012-02-091-2/+2
| | | | | | | | Refactor function name macros and simplify the FUNC_ENTER macros, to clear away the cruft and prepare for further cleanups. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug, production & parallel
* [svn-r19798] Purpose:Mike McGreevy2010-11-171-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | Add additional error checking to catch erroneous user input. Description: Attempting to retrieve a links's name by index in the case where the link is external and the file that the object is located in doesn't exist was causing a segmentation fault (in production) and an assertion failure (in debug). The segfault wasn't occuring until the metadata accumulator attempted a write, so I've added error checking higher in the pipeline in H5O_protect (where there was previously just an assert) to catch this. I've also added additional asserts in the H5F layer where there were none. Additionally, I added another case to the links.c test to test that this fails gracefully instead of segfaulting or asserting out. Tested: h5committest and gandalf (mac os x)
* [svn-r19617] Purpose:Mike McGreevy2010-10-151-18/+6
| | | | | | | | | | Merge accum_tests branch back to the trunk. Description: Changes consist of addition of tests for H5Faccum.c source code, as well as some fixes that address some discovered bugs in the metadata accumulator on several corner cases. Tested: h5committested
* [svn-r17017] Description:Quincey Koziol2009-06-081-0/+8
| | | | | | | | | | | | | | | | | | | | | | | Rework the "proxy address" code to be more general and implement a better "temporary address" feature, that will allow for metadata allocations to be deferred to when the metadata is actually flushed to the file. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r15800] Description:Quincey Koziol2008-10-071-0/+165
Bring file free space branch changes through r15795 into trunk, which includes a fair bit of code cleanup & rearrangement along with a couple of bug fixes also. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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