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* [svn-r29903] merge from trunk.Mohamad Chaarawi2016-05-091-3/+8
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| * [svn-r29612] Description:Quincey Koziol2016-04-031-1/+1
| | | | | | | | | | | | | | | | | | Bring updated layout and EFL property comparisons and new "latest format" flags from revise_chunks branch. Tested on: MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (h5committest forthcoming)
| * [svn-r29202] Fix for unknown message HDFFV-9697.Vailin Choi2016-02-241-1/+1
| | | | | | | | Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
| * [svn-r28959] merge from trunk.Mohamad Chaarawi2016-01-221-1/+2
| |\ | | | | | | | | | renaming metadata dxpl properties.
| | * [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity ↵Mohamad Chaarawi2016-01-211-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | checks from metadata dxpls - remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead. - remove flush_me_collectively flag from cache entries - add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit. tested on BB-8 with serial and parallel.
| * | [svn-r28649] - add new API to toggle collective metadata write.Mohamad Chaarawi2015-12-141-1/+2
| | | | | | | | | | | | | | | - set default to FALSE - fix some bugs.
| * | [svn-r27929] merge from trunk.Mohamad Chaarawi2015-10-011-3/+1
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| * | [svn-r27261] apply metadata enhancement patch that was based on the mdc 3 ↵Mohamad Chaarawi2015-06-211-0/+3
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* | | [svn-r27777] merge from trunk.Mohamad Chaarawi2015-09-141-3/+1
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| * | [svn-r27768] Description:Quincey Koziol2015-09-141-3/+1
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Complete revamp of package initialization/shutdown mechanism in the library. Each package now has a single init/term routine. This new way should avoid packages being re-initialized during library shutdown and is also be _much_ more proactive about giving feedback for resource leaks internal to the library. Introduces a new "module" header file for packages in the library (e.g src/H5Fmodule.h) which sets up some necessary package configuration macros for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly modified version of this header, src/H5FDdrvr_module.h) Also cleaned up a bunch of resources leaks all across the library and tests, along with addressing many warnings, as I encountered them. Tested on: MacOSX/64 10.10.5 (amazon) w/serial & parallel Linux/64 3.10.x (kituo) w/serial & parallel Linux/64 2.6.x (ostrich) w/serial
* | [svn-r27286] merge from trunk.Mohamad Chaarawi2015-06-261-6/+49
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| * [svn-r27237] Description:Quincey Koziol2015-06-181-6/+49
| | | | | | | | | | | | | | | | | | Merge v3 metadata cache changes to trunk. Yay! :-) Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial & parallel (daily tested on branch)
* | [svn-r27208] merge from trunk.Mohamad Chaarawi2015-06-161-20/+24
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| * [svn-r27144] Description:Quincey Koziol2015-06-031-20/+24
| | | | | | | | | | | | | | | | | | | | Normalize trunk against the metadata_cache_merge branch, in preparation for merging the branch into the trunk. Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/64 2.6.x (koala) w/serial Linux/32 2.6.x (jam) w/serial & parallel
* | [svn-r27090] merge from trunk.Mohamad Chaarawi2015-05-151-4/+4
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| * [svn-r27075] Description:Quincey Koziol2015-05-151-4/+4
| | | | | | | | | | | | | | | | Clean up H5F interface, to align w/v3 metadata cache changes Tested on: MacOSX/64 10.10.3 (amazon) w/serial & parallel Linux/32 2.6.* (jam) w/serial & parallel
* | [svn-r25575] cleanup H5I usage in VOL by removing the use of the aux pointer andMohamad Chaarawi2014-09-051-2/+0
| | | | | | | | | | make a higher level wrapper object around all VOL objects that includes the VOL information.
* | [svn-r25537] VOL framework changes.Mohamad Chaarawi2014-08-191-0/+30
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* | [svn-r25482] - update is_accessible implementation to use fapl and pass it ↵Mohamad Chaarawi2014-07-241-1/+1
| | | | | | | | | | | | | | | | | | | | down to H5Fint.c - move is_HDF5 inside deprecated macros in H5Fpublic.h - move H5ES_status_t outside of H5VLpublic.h to H5ESpublic.h - rename public properties in H5VLpublic.h to H5VL_PROP_* to add more scoping - no need to include private if pkg is included in H5VLnative.c - rename plist_id to lapl_id in loc_params structs
* | [svn-r25471] merge from trunk and resolve conflicts.Mohamad Chaarawi2014-07-231-0/+8
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| * [svn-r25468] some code refactoring to align trunk with VOL branch.Mohamad Chaarawi2014-07-221-0/+6
| | | | | | | | tested with h5committest.
* | [svn-r25254] merge from trunk.Mohamad Chaarawi2014-06-111-10/+6
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| * [svn-r25097] Description:Quincey Koziol2014-04-251-6/+1
| | | | | | | | | | | | | | | | | | | | | | Make progress toward moving from DXPL IDs to property list structures within the library. Also move the signature location code from the H5F package to the H5FD package, where it's a better fit. Also, clean up some more compiler warnings along the way. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
| * [svn-r25092] Description:Quincey Koziol2014-04-241-3/+3
| | | | | | | | | | | | | | | | | | | | More migration to using H5F_io_info_t pointers and away from using property list IDs internally. Also, clean up some compiler warnings in the cache code. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest forthcoming)
| * [svn-r25088] Description:Quincey Koziol2014-04-231-1/+1
| | | | | | | | | | | | | | | | | | Introduce "file I/O info" struct, to hold file & dxpl pointers, and start propagating up through library. Tested on: Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel (h5committest coming)
| * [svn-r24998] Description:Quincey Koziol2014-04-091-0/+1
| | | | | | | | | | | | | | | | Check in Neil's changes for correctly handling case where library is reinitialized through a deprecated routine. Tested on: Linux 2.4.x/32 (jam)
* | [svn-r24593] merge from trunkMohamad Chaarawi2013-12-231-1/+0
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| * [svn-r24476] Description:Quincey Koziol2013-11-301-1/+0
| | | | | | | | | | | | | | | | | | Remove duplicate "intent" flags from top & shared file structures, leaving them only in the shared file structure. Tested on: Mac OSX/64 10.9.0 (amazon) w/gcc 4.8, both parallel & serial (too minor to require h5committest)
* | [svn-r24208] Merge revisions through r24202 from trunk to vol branchNeil Fortner2013-09-271-1/+1
|\ \ | |/ | | | | | | | | Tested: jam, koala, ostrich, platypus (h5committest) There are failures on platypus (cmake) that were present previously
| * [svn-r24140] Purpose: Remove problematic abandonment of error stackNeil Fortner2013-09-131-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: H5Fis_hdf5 uses H5F_locate_signature to check if the file is hdf5. If it does not locate the signature, H5F_locate_signature would issue an error and return HADDR_UNDEF. H5Fis_hdf5 does not consider it an error if the signature is not found, so it does not issue an error or clear the stack. The filled stack could then cause issues later on. Changed H5F_locate_signature to return herr_t, not issue an error if the signature is not found, and added a parameter for a pointer to the signature address that the function fills in. Tested: jam, koala, ostrich (h5committest)
* | [svn-r24088] Merging r24044 through r24087Mohamad Chaarawi2013-08-301-2/+2
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| * [svn-r24087] Rename the private H5RC (reference count) module to H5UC (Use ↵Mohamad Chaarawi2013-08-301-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | Count). This is needed to avoid a conflict with the Read Context object to be introduced in another Project. No impact on users, since this is a private module, and low for developers as the RC module use is very sparse in the library. Tested with h5committest.
* | [svn-r23834] merge from trunk up to r23833.Mohamad Chaarawi2013-06-271-1/+0
|\ \ | |/ | | | | Fixed several conflicts, mostly because calling API routines internally was removed from several places in the trunk.
| * [svn-r23713] Description:Quincey Koziol2013-05-211-1/+0
| | | | | | | | | | | | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* | [svn-r22555] remove the vol_cls from the H5F_t structMohamad Chaarawi2012-07-111-1/+0
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* | [svn-r22554] remove the file_id from the H5F_t struct and add an id_exists ↵Mohamad Chaarawi2012-07-111-1/+1
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* | [svn-r22439] file image and mount operations handled in VOLMohamad Chaarawi2012-06-061-0/+2
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* | [svn-r22168] - switch VOL property to be a pointer rather than an IDMohamad Chaarawi2012-03-281-2/+2
| | | | | | | | - rename some utility routines
* | [svn-r22056] - fix several bugs in id managementMohamad Chaarawi2012-03-121-1/+1
| | | | | | | | | | | | - update test cases that get the H5F_t struct to use H5I_object_verify instead of H5I_object because of the higher user level ID that is introduced - add some workarounds to take into consideration that the high level ID is not used everywhere at the moment - add a routine that translates from low level ids to high level ids
* | [svn-r22032] - move all HDF5 library access for H5F routines to the native ↵Mohamad Chaarawi2012-03-071-1/+1
| | | | | | | | | | | | | | | | layer, higher layer only handle ids - create a high level user id to return to users to hold vol id and object id - all H5 callbacks implemented except for get_object_count/ids - some bug fixes, test suite fails for now pending update to user ids of other objects
* | [svn-r21915] starting to set up vol frameworkMohamad Chaarawi2012-02-071-0/+2
|/ | | | fopen, fclose, fcreate routed through native vol
* [svn-r21133] Description:Quincey Koziol2011-07-201-2/+2
| | | | | | | | | | | | | | | | | More code cleanups to reduce coupling between packages that use the H5F internal routines, but really aren't part of the H5F "package". Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Mac OS X/32 10.6.8 (amazon) in debug mode
* [svn-r20219] Description:Quincey Koziol2011-03-101-1/+1
| | | | | | | | | | | | | | | | | Tell the VFL flush call that the file will be closing, allowing the VFDs to avoid sync'ing the file (particularly valuable in parallel). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
* [svn-r20064] Purpose: Implement external file cacheNeil Fortner2011-02-081-0/+12
| | | | | | | | | Description: Implements a cache of files opened through external links. Adds the public functions H5Pset_elink_file_cache_size(), H5Pget_elink_file_cache_size(), and H5Frelease_file_cache(). Tested: jam, amani, heiwa (h5committest), fedora 64.
* [svn-r19617] Purpose:Mike McGreevy2010-10-151-4/+4
| | | | | | | | | | Merge accum_tests branch back to the trunk. Description: Changes consist of addition of tests for H5Faccum.c source code, as well as some fixes that address some discovered bugs in the metadata accumulator on several corner cases. Tested: h5committested
* [svn-r19587] Description:Quincey Koziol2010-10-131-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | Address issue with object headers being created getting evicted from the metadata cache cache before they are completely initialized. This is done by pinning the object header in the cache until it is completely initialized and attached to a group. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19247] Description:Quincey Koziol2010-08-171-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19246 from Coverity branch to trunk: Improve metadata "accumulator" for files to track the dirty region within the accumulator data. This allows the accumulator to drop clean data and reduces the number of I/O operations when it is dirtied. This is progress toward Bz#1142 - speeding up the fheap test (which it doesn't help much, actually, but it does help other aspects of file I/O). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r18702] Description:Quincey Koziol2010-05-051-2/+2
| | | | | | | | | | | | | | | | | | | | | | | Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18505] Description:Quincey Koziol2010-04-021-0/+1
| | | | | | | | | | | | | | | | | | | | Move code to free superblock data structure into separate routine, in preparation for upcoming metadata journaling -> trunk merging. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode
* [svn-r18502] Description:Quincey Koziol2010-04-021-1/+1
| | | | | | | | | | | | | | | | | | | | | Bring r18501 from metadata journaling "merging" branch to trunk: Extract data structure 'destroy' routines from metadata cache client 'destroy' callbacks. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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