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* Merges Quincey's parallel collective MD fix from 1.10Dana Robinson2020-09-031-1/+0
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* Brings H5Fstart_swmr_write changes from developDana Robinson2020-08-181-0/+3
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* Brings file locking changes from developDana Robinson2020-08-141-0/+2
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* H5PB and H5Faccum normalization with develop.Dana Robinson2020-06-041-4/+12
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* Changed H5F_file_t to H5F_shared_t (as in develop/1.12)Dana Robinson2020-05-261-3/+3
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* Moved H5MM_memcpy and H5MM_xfree_const from developDana Robinson2020-05-151-2/+2
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* merge intel warning fixKimmy Mu2020-01-091-1/+1
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* HDFFV-10658: setting and getting properties in API context. Porting the ↵Songyu Lu2019-07-261-2/+3
| | | | changes to the develop branch into the 1.10 branch: mainly the external file prefix and VDS prefix.
* Make corresponding changes for H5Sencode based on PR #1645 to develop branch.Vailin Choi2019-04-231-1/+1
| | | | The core changes are to revert previous modifications now that we use API context for fapl.
* Incoporate minimized dataset headers code and tests.Jacob Smith2018-12-311-0/+6
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* Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-231-1/+1
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* Fixed HDFFV-10404Binh-Minh Ribler2018-07-261-1/+1
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-141-9/+5
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| * Normalization with vol_integration branch.Dana Robinson2018-06-071-9/+5
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* | Fixed libver bounds underscore issueM. Scot Breitenfeld2018-05-111-1/+0
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-30/+22
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| * Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-04-011-0/+1
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| | * Created internal functions for a couple of H5F calls.Dana Robinson2018-03-301-0/+2
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| * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-239/+237
| |\ \ | | |/ | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-26/+12
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* | | Merge pull request #943 in HDFFV/hdf5 from develop to hdf5_1_10Larry Knox2018-03-131-0/+4
|\ \ \ | | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '9247388c3d14510341ea3f07847ce2cbb6e44a8e': Rework new tests into one macro Added a "won't fix" RELEASE.txt entry for HDFFV-10356. Fix CMake test names Fixed typo Add release note for HDFFFV-10397. Added a fix for HDFFV-10358. Fixed documentation Description: - Updated the description of copy constructor for clarification. - Removed unnecessary comments. Platforms tested: Linux/64 (jelly) Enhancement to the tool h5clear (HDFFV-10360) Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
| * | Enhancement to the tool h5clear (HDFFV-10360)Vailin Choi2018-03-121-0/+4
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| * | Modifications made based on comments from pull request.Vailin Choi2018-02-071-5/+5
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| * | Merge branch develop into bugfix/version_boundsVailin Choi2018-01-121-210/+214
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| | * | HDFFV-10361 Correct signaturesAllen Byrne2018-01-091-3/+1
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| | * | HDDFV-10361 combine duplicated prefix utility functionsAllen Byrne2018-01-051-0/+6
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| * | | Changes made based on code reviews.Vailin Choi2018-01-121-0/+1
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| * | | Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-12-081-6/+9
| |\ \ \ | | | | | | | | | | | | | | | Merge from develop.
| * \ \ \ (1) Merge branch 'develop' into bugfix/version_boundsVailin Choi2017-11-251-3/+0
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (2) Add two new options to h5repack for low and high bounds as in H5Pset_libver_bounds. (3) Modify message pre_copy callbacks so that H5Ocopy can handle version bounds check. (4) Add version bounds check for cache image feature.
| * | | | | Initial checkin for library version boundsVailin Choi2017-10-031-20/+8
| |/ / / / | | | | | | | | | | | | | | | Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
* | | | | Resolve compilation errors.Vailin Choi2018-03-091-1/+1
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* | | | | Needs to sync with lib version and Sencode.M. Scot Breitenfeld2018-03-071-28/+11
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* | | | | HDFFV-9724 merge vds duplicate codeAllen Byrne2018-01-111-0/+4
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* | | | | synced with developM. Scot Breitenfeld2018-01-051-210/+210
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| * | | | HDFFV-9724 Corrected files and verified testsAllen Byrne2017-12-281-210/+210
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| * | | | Revert "Merge pull request #826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to ↵lrknox2017-12-221-210/+210
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop" This reverts commit b1223dd653e65e076af92b2dfe236f3704da81c8, reversing changes made to b25f123f5f5e25c1447a6a02861cb7c7265c12f2.
| * | | | HDFFV-9724 Remove VDS file cache functionalityAllen Byrne2017-12-201-1/+0
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| * | | | Correct var nameAllen Byrne2017-12-131-4/+4
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| * | | | Fix VDS file cache var namesAllen Byrne2017-12-131-212/+212
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| * | | | HDFFV-9724 Initial changes and testAllen Byrne2017-12-111-0/+1
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* | | | Merge branch 'develop' into hdf5_1_10M. Scot Breitenfeld2017-12-121-6/+9
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| * | | Normalization with VOL integration branch.Dana Robinson2017-12-051-2/+2
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| * | Normalization with VOL integration branch.Dana Robinson2017-12-011-4/+7
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| * Changes made based on RFC review commentsVailin Choi2017-07-181-1/+3
| | | | | | | | Test the changes in a branch via daily testing.
| * Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-04-251-6/+4
| | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
* | Fix for HDFFV-9947 H5SencodeVailin Choi2017-11-281-3/+6
| | | | | | | | Modifications to fix H5Sencode bug when num points selected is > 2^32.
* | Changes made based on RFC review commentsVailin Choi2017-08-021-1/+3
| | | | | | | | Test the changes in a branch via daily testing.
* | Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
|/ | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* Checkin of fix for CGNS bugmainzer2017-04-061-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (https://jira.hdfgroup.org/browse/HDFFV-10055). Briefly, in H5C_collective_write() in H5Cmpio.c, the metadata cache attempts to perform a collective write of metadata cache entries. This worked fine as long as all processes had at least one entry to write. However, when the process has no entries, the function tries to participate in the collective write by calling MPI_File_set_view(), MPI_File_write_all() and then MPI_File_set_view() again, to match the calls in H5FD_mpio_write(). After pull request 183, the CGNS test benchmark_hdf5 started failing. On investigation, I determined that the failure occurred in the first call to MPI_File_set_view() in the "no data to write" path through H5C_collective_write(). Note that pull request 183 did not create the problem, it only exposed it. The bug can be observed after pull request 182 if one executes the CGNS progam src/ptests/benchmark_hdf5 with 90 processes. The problem appears to have been that the calls to MPI_File_set_view() in H5C_collective_write() and H5FD_mpio_write() were using different values for the info parameter. I patched the problem by adding a MPI specific VFD call allowing me to get the MPI_Info used in H5FD_mpio_write() for use in MPI_File_set_view() calls in H5C_collective_write(). Tested serial & parallel, debug & production on Jelly.
* Final merge of page buffering branch to developQuincey Koziol2017-03-141-3/+78
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