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* Cherry pick of 0225e6d5969Quincey Koziol2020-01-041-12/+12
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* Modify H5VL initialization routines to initialize all VOL-managed objectNeil Fortner2019-12-131-0/+1
| | | | | types. Modify H5VLwrap_register() to reject non-VOL-managed object types. Also fix overisights in h5trace.c from previous changes.
* Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILEJerome Soumagne2019-12-091-1/+1
| | | | Remove H5F__get_file_id() and use only private routine instead
* Implement H5VLget_file_type() to return a copy of a datatype with theNeil Fortner2019-12-061-1/+4
| | | | | | | | | | | location set to be in a file. Only meant to be used by VOL connectors. Implement H5VLpeek_connector_id() to support connectors querying their own IDs. Fix app_ref with connector IDs in a couple places (external VOLs registered as default through ENV should be visible to the application). Modify vlen and reference interfaces to work with arbitrary VOL connectors. Implement file "post open" specific callback, to enable connectors to update their file structs after a wrap context has been set.
* Marked up H5Fget/set_mpi_atomicity() to use the VOL.Dana Robinson2019-10-111-0/+2
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* Add 'blob' callbacks to VOL, along with a native implementation to store themQuincey Koziol2019-10-081-4/+8
| | | | | | | in the global heap, and changed the VL datatype conversion code to use blobs. Move encode/decode of sequence lengths into VL datatype callbacks, from native VOL blob routines.
* Move ext_path field in H5F_t to H5F_shared_t.Vailin Choi2019-08-311-1/+1
| | | | Remove unused routine H5F_set_coll_md_read().
* Move coll_md_read and coll_md_write fields in H5F_t to H5F_shared_t.Vailin Choi2019-08-311-1/+1
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* Added H5Pset/get_mpi_params calls and unified them with the MPI-I/ODana Robinson2019-08-261-0/+4
| | | | VFD info in H5FDmpio.c.
* Switch shared file struct name from 'H5F_file_t' to 'H5F_shared_t', to matchQuincey Koziol2019-08-221-9/+9
| | | | naming convention for shared structs in rest of library data structures.
* Begin converting the H5MF interface to use shared file pointers insteadQuincey Koziol2019-08-211-0/+1
| | | | of top file pointers.
* Begin converting dataset code to use shared file pointer instead of top fileQuincey Koziol2019-08-201-0/+2
| | | | pointer.
* First pass of converting H5PB_* routines to use shared file pointers.Quincey Koziol2019-08-191-0/+7
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* Partial H5F__accum_* routines.Quincey Koziol2019-08-191-0/+1
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* Fix H5F_get_file_id and H5F__get_file_id to take app_ref parameterJerome Soumagne2019-08-141-1/+1
| | | | Fix app_ref_count from being incremented when private routines are used
* Merge pull request #8 in ~VCHOI/my_third_fork from develop to ↵Vailin Choi2019-06-241-8/+8
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | bugfix/new_shutdown_fsm * commit '35fd0ec8ceffe96cee352187154da15c967fb990': Updated H5Tcopy() to get the dataset's datatype through the VOL when that is passed in as the object ID. Fix fortran test and test library linking Update GCC 6 & 7 flags for CMake builds Move -Wnormalized down into GCC 6.x flags Put the memcpy overlap check back into H5MM. Fixed the heap overflow in t_filters_parallel Fixed some low-hanging fruit from -fsanitize in t_filters_parallel. Add lib dir for testing plugins Add support for GCC 7.x warnings, update warnhist script to account for them, clean up warnings. Add H5_HLDLL prefix for windows link HDFFV-10805 cleanup examples and test code Fix minor typo in H5S_select_iter_release Add missing fortran mods HDFFV-10805 Fix test of library libinfo Cleanup possible CMake target conflicts Correct CMake issues
| * Add support for GCC 7.x warnings, update warnhist script to account for them,Quincey Koziol2019-06-211-8/+8
| | | | | | | | clean up warnings.
* | Checkin for new shutting down free-space manager.Vailin Choi2019-06-201-6/+3
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* Minor fix: removal of unnecessary enum values.Songyu Lu2019-04-101-3/+1
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* Minor fixes: updating the test vds_env.c according to the set up of vds.c.Songyu Lu2019-04-101-1/+1
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* HDFFV-10658 - setting and getting properties in API context:Songyu Lu2019-04-091-2/+5
| | | | | 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
* - Added H5MMprivate.h #includes where neededDana Robinson2019-03-161-0/+1
| | | | | - Added casts to quiet H5MM_memcpy warnings - Removed char * casts from HDmemcpy
* Added an H5MM_memcpy call that checks for buffer overlap.Dana Robinson2019-03-161-2/+2
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* Merge branch 'develop' of ↵Jacob Smith2018-12-191-2/+0
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize
| * Clear driver properties before returning them to application.Quincey Koziol2018-12-191-2/+0
| | | | | | | | | | Move write_tracking and page_size properties to be inside the core VFD's driver properties.
* | Move H5Fset_dset_no_attrs_hint VOL operations to native.Jacob Smith2018-12-181-2/+2
| | | | | | | | | | Move minimzied object header tests from separate file to test/ohdr.c Some formatting changes.
* | add missing paramter - macro seemingly unused, but absence results in ↵Jacob Smith2018-12-131-1/+1
| | | | | | | | compiler complaint
* | fix reference; move declaration in fileJacob Smith2018-12-131-2/+2
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* | Merge branch 'develop' into dset_ohdr_minimizeJacob Smith2018-12-121-8/+12
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-181-1/+1
| |\ | | | | | | | | | stackable_vol
| | * Renamed h5repart's -family_to_sec2 to -family_to_single.Dana Robinson2018-11-141-1/+1
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| * | Switch driver | plugin => connector.Quincey Koziol2018-11-041-1/+1
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| * | Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-1/+2
| |/ | | | | | | modified: test/dsets.c
| * VOL FEATUREDana Robinson2018-10-101-3/+4
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| * Remainder of vol_normalization changes (dataset, attribute, files, objects).Dana Robinson2018-09-241-3/+2
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* | Change H5F internals accessJacob Smith2018-09-141-0/+3
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* Fixed HDFFV-10404Binh-Minh Ribler2018-07-131-1/+1
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Revert "Merge pull request #1116 in HDFFV/hdf5 from ↵hdftest2018-06-241-1/+1
| | | | | | | ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" This reverts commit e9f476dad47ce593f13dacb77b1cc664d1f24e7b, reversing changes made to 2ff00b1b937ebe36ac6ddf590c16a4c27fc0b053.
* Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-141-9/+5
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| * Normalization with vol_integration branch.Dana Robinson2018-06-071-9/+5
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* | Fixed libver bounds underscore issueM. Scot Breitenfeld2018-05-111-1/+0
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* | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-05-081-30/+22
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| * Merge remote-tracking branch 'origin/develop' into merge_func_enter_volQuincey Koziol2018-04-011-0/+1
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| | * Created internal functions for a couple of H5F calls.Dana Robinson2018-03-301-0/+2
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| * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-239/+237
| |\ \ | | |/ | | | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * | Add API context interface and use it throughout the library.Quincey Koziol2018-03-151-26/+12
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* | | Merge pull request #943 in HDFFV/hdf5 from develop to hdf5_1_10Larry Knox2018-03-131-0/+4
|\ \ \ | | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '9247388c3d14510341ea3f07847ce2cbb6e44a8e': Rework new tests into one macro Added a "won't fix" RELEASE.txt entry for HDFFV-10356. Fix CMake test names Fixed typo Add release note for HDFFFV-10397. Added a fix for HDFFV-10358. Fixed documentation Description: - Updated the description of copy constructor for clarification. - Removed unnecessary comments. Platforms tested: Linux/64 (jelly) Enhancement to the tool h5clear (HDFFV-10360) Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
| * | Enhancement to the tool h5clear (HDFFV-10360)Vailin Choi2018-03-121-0/+4
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| * | Modifications made based on comments from pull request.Vailin Choi2018-02-071-5/+5
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| * | Merge branch develop into bugfix/version_boundsVailin Choi2018-01-121-210/+214
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