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* [svn-r726] Changes since 19980924Robb Matzke1998-09-281-4/+56
| | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5B.c ./src/H5Bprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h ./test/Makefile.in ./test/unlink.c [NEW] Finished H5Gunlink() and H5Grename(). ./src/H5F.c ./src/H5Fistore.c ./src/H5Fprivate.h Removed the last memcpy() from the chunk cache. ./src/H5Fistore.c The offset of a chunk within a dataset is an 8-byte quantity per dimension instead of 4 bytes. ./src/H5HL.c Fixed infinite loops in H5HL_remove().
* [svn-r714] Changes since 19980911Robb Matzke1998-09-221-8/+113
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- This checkin is to fix a couple bugs for Jim Reus. Some features are not fully implemented but it shouldn't break anything. ./config/conclude.in ./test/Makefile.in `make clean' removes object files from the test directory as well as a couple more *.h5 temp files. ./config/hpux9.03 [NEW] New config file for HP/UX 9.03 ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5G.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gstab.c Not-yet-complete version of object removal. ./src/H5Fistore.c ./src/H5Fprivate.h Experimental optimizations, disabled by default. ./src/H5Fprivate.h Default low-level driver was changed to H5F_LOW_SEC instead of H5F_LOW_STDIO because the sec2 driver is much easier to debug. ./src/H5Fsplit.c ./src/H5G.c ./src/H5Z.c Changed a couple return statements to HRETURN. ./src/H5Odtype.c Removed a check for nested compound data types from back when they weren't implemented that raised an error. ./tools/h5tools.c Increased temp buffer sizes and added a check for buffer overflow so we fail an assertion (hopefully). This really needs to be fixed sometime. Added support for printing H5T_STRING data types.
* [svn-r673] Changes since 19980908Robb Matzke1998-09-081-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
* [svn-r654] Fixed last bug (hah! ;-) for beta release, changed H5Gget_stat to ↵Quincey Koziol1998-09-021-7/+7
| | | | | | H5Gget_objinfo and renamed internal functions to match up with the renamed API functions.
* [svn-r641] Changed function names for beta release.Quincey Koziol1998-09-011-3/+3
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* [svn-r633] Changes since 19980828Robb Matzke1998-08-311-48/+129
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./RELEASE Updated with important changes I made since the second beta. ./src/H5A.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5G.c ./src/H5Gprivate.h ./src/H5R.c ./src/H5Rprivate.h ./src/H5T.c ./src/H5Tprivate.h Any API function that used to take an `hid_t loc_id' followed by a `const char *name' can now take any type of object for the loc_id as long as the object is somehow associated with a file. Internally, H5G_loc() was modified to return an H5G_entry_t* instead of an H5G_t* so it's more general. Among other things, this allows one to retrieve information about an object like a named type or dataset without knowing the name of the type or dataset: int get_nlinks (hid_t obj) { H5G_stat_t sb; if (H5Gstat(obj, ".", TRUE, &sb)<0) return -1; return sb.nlink; } ./test/gheap.c ./test/istore.c These files needed a couple of changes because they call some of the internal functions whose H5G_t arguments changed to H5G_entry_t. ./src/H5A.c Got rid of all the switch statements for getting symbol table entries for varous objects and replaced them with a call to H5G_loc() allowing attributes to automatically apply to any type of object that belongs to a file. ./test/Makefile.in Moved the ragged array tests from the normal list of tests to the `make timings' target. ./test/ragged.c Added rewrite tests -- rewrite the rows of a dataset changing the number of rows and the length of each row. ./test/mtime.c Added a test that checks that H5Gstat() can be called with a dataset as the first argument. ./src/H5S.c Added #ifdef HAVE_PARALLEL around code to check for the HDF5_MPI_OPT_TYPES environment variable because the global variable that gets set is #ifdef'd. ./bin/release bzip2 uses .bz2 as the file extension.
* [svn-r627] Changes since 19980827Robb Matzke1998-08-281-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5G.c Fixed a link count on groups. Groups were always created with a link count of zero instead of one. ./src/H5Gpublic.h Added H5G_NTYPES so applications can easily declare arrays which are indexed by object type. ./src/H5O.c Calling `H5O_link(&ent,0)' will succeed when the file is open for read only because it's the only way to get the object's current link count. ./tools/h5ls.c Can take non-group object names on the command line (and multiple objects). Reorganized to be more extendible. The link count is displayed for `-v'. ./src/H5F.c Dumping of cache statistics is controlled by only the HDF5_DEBUG environment variable and not the H5F_ACC_DEBUG flag for H5Fopen() and H5Fcreate() since this makes it similar to the other debugging options. ./src/H5R.c ./test/ragged.c ./test/Makefile.in Tests pass but still a little work left to be done.
* [svn-r620] Changes since 19980825Robb Matzke1998-08-271-14/+14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5R.c [NEW] ./src/H5Rprivate.h [NEW] ./src/H5Rpublic.h [NEW] ./src/Makefile.in ./src/hdf5.h ./test/ragged.c [NEW] Preliminary support for 2d ragged arrays for Mark Miller and Jim Reus. Not fully implemented yet. The test is not actually part of `make test' because we still have some memory problems. ./src/H5E.c ./src/H5Epublic.h Added H5E_RAGGED as a major error number. ./bin/release Checks the MANIFEST file against `svf ls' on systems that have it. ./bin/trace Fixed a bug that caused arguments of type `void *x[]' to not be handled. ./src/H5.c Removed unused variables and changed a couple types to fix compiler warnings. Added tracing support for ragged array object ID's and arrays of pointers. ./src/H5D.c H5Dcreate() will complain if either of the property lists are invalid (instead of using the default). ./src/H5D.c ./src/H5Dprivate.h Split H5Dget_space() into an API and internal function so it can be called from the new ragged array layer. ./src/H5Fistore.c Fixed warnings about unsigned vs. signed comparisons. ./src/H5Flow.c Fixed a warning about a variable being shadowed in the MPI-IO stuff. ./src/H5Iprivate.h ./src/H5Ipublic.h Added the H5_RAGGED atom group. ./src/H5Shyper.c Fixed some freeing-free-memory errors that resulted when certain arrays were freed but the pointers were left in the data structures. I simply set the pointers to null after they were freed. ./src/H5Sprivate.h ./src/H5Sselect.c Split the H5Sselect_hyperslab() function into an API and a private function so it could be called from the ragged array layer. Added H5S_SEL_ERROR and H5S_SEL_N to the switch statements to get rid or compiler warnings. ./src/H5Tconv.c Removed a misleading comment. ./test/bittests.c Fixed a warning about a printf(). ./test/cmpd_dset.c Fixed warnings about unused variables because of test #11 being commented out. ./bin/trace Shortened the right margin for the output to allow room for the `);' at the end of the TRACE() macros.
* [svn-r594] Changes since 19980813Robb Matzke1998-08-141-9/+20
| | | | | | | | | | | | | | | ---------------------- ./src/H5G.c ./src/H5Gpublic.h ./test/links.c Fixed a bug in H5Gstat() that caused the wrong information to be returned sometimes. Added check for named data types. ./test/extend.c ./test/links.c ./test/mtime.c Added `all tests passed' messages.
* [svn-r569] Changes since 19980731Robb Matzke1998-08-051-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/release Added ./Makefile to the distribution again -- it got lost in the changes last week although it isn't all that important a file since it gets clobbered by configure anyway. ./bin/trace ./doc/html/Filters.html ./doc/html/H5.format.html ./doc/html/H5.user.html ./src/H5.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5E.c ./src/H5Epublic.h ./src/H5Farray.c ./src/H5Fistore.c ./src/H5Fprivate.h ./src/H5O.c ./src/H5Ocomp.c ./src/H5Oprivate.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Sprivate.h ./src/H5Ssimp.c ./src/H5Z.c ./src/H5Zprivate.h ./src/H5Zpublic.h ./src/hdf5.h ./test/dsets.c ./tools/h5ls.c Added the data filter pipeline, a generalization of the compression stuff which allows things like checksums, encryption, compression, performance monitoring, etc. See ./doc/html/Filters.html for details -- it replaces the Compression.html doc. ./src/H5T.c Cleaned up debugging output. ./config/linux Added checks for egcs and pgcc and changed optimization flags for the compilers. ./src/H5G.c ./tools/h5dump.c Fixed compiler warnings in these files and others. ./configure.in ./src/H5private.h ./test/mtime.c Added a check for difftime() and defined HDdifftime() to do something else on systems that don't have difftime().
* [svn-r546] Changes since 19980724Robb Matzke1998-07-291-2/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./doc/html/H5.format.html ./src/H5O.c ./src/H5Oprivate.h ./src/H5Omtime.c [NEW] ./src/H5private.h ./src/Makefile.in Added the modification time message. If an object header has this message then it's value is updated with the current time whenever anything changes in the object header. ./acconfig.h ./configure.in Alas, there seems to be no standard way to convert a string time like 19980727122800 in UTC to a time_t since mktime() only converts local times to time_t. So I've modified the configuration to check for various ways of getting the time zone information: * Added checks for the `tm_gmtoff' field of `struct tm'. * Added a check for the `timezone' global variable. * Added a check for `struct timezone'. * Added a check for BSDgettimeofday(). * Added a check for gettimeofday() although it doesn't actually set the timezone argument on some systems. * Added a check to see if `tm_zone' is a member of `struct tm'. * Added a check to see if `tzname' is a global variable. * Added a check to see if `struct tm' is defined in time.h or sys/time.h. It's not difficult to get the right UTC modification message into the object header, but some systems might have problems getting the right time back out (Irix64 is one) and those systems will report zero for the H5G_stat_t.mtime from an H5Gstat() call as if the mtime message isn't even present. It will, however, continue to be updated as normal. ./src/H5G.c ./src/H5Gpublic.h The H5G_stat_t struct now contains an `mtime' field which will hold the object modification time. If the object has no object modification time then the `mtime' will be initialized to zero. Fixed a bug in H5G_stat() that caused the `objno' field of the H5G_stat_t to be set incorrectly on some machines. ./src/H5D.c Writing to external datasets fail if the hdf5 file is not open for writing. A modification time message is added to the dataset object header when it's created and H5O_touch() is called from H5D_write() to update that message. ./src/H5T.c Fixed a bug in H5Tget_member_dims() that caused a segmentation fault if one of the output array arguments was the null pointer. Relaxed the member dimension checking in H5Tinsert_array() so it can also be used for scalar members. ./test/Makefile.in Added additional file names to the `mostlyclean' target. ./tools/h5dump.c ./tools/h5tools.h Increased the temporary buffer size to 1MB. Added support for printing compound data types with array members. When printing H5T_NATIVE_CHAR and H5T_NATIVE_UCHAR we escape double quote characters. ./tools/h5ls.c Changed the output format a little because we were starting to get too much info to fit on a line. Without `--verbose' each object occupies one line of output. Otherwise, additional information is printed below the object name: object file address, comment, and modification time. If `--dump' is given then the data is printed after the other information. ./test/cmpd_dset.c Changed the way the dataset is initialized to be more uniform.
* [svn-r537] Changes since 19980722Robb Matzke1998-07-231-11/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5A.c ./src/H5Apublic.h ./test/tattr.c Switched the order of the second and third argument of H5Aget_name() to make it consistent with other functions that take buffers and buffer sizes. ./src/H5G.c ./src/H5Gpublic.h ./src/H5Gprivate.h The H5Gget_comment() function returns the size of the comment including the null terminator. If the object has no comment then zero is returned. If an error occurs then a negative value is returned. ./MANIFEST ./tools/Makefile.in ./tools/h5tools.h [NEW] ./tools/h5dump.c [NEW] Created a library for printing values of datasets in a way that looks nice. It's not done yet, but I needed it for debugging the contents of files from Jim Reus. ./tools/h5ls.c Added the `-d' and `--dump' options which cause the contents of a dataset to be printed. Added `-w N' and `--width=N' options to control how wide the raw data output should be. If you want single-column output then say `-w1'. Printing dataset values can now handle datasets of any integer or floating point atomic type. As a special case, integers which are one byte wide are treated a character strings for now. Sample output: $ h5ls --dump --width=60 banana.hdf ARCHIVE 0:0:0:744 Dataset {52/Inf} Data: (0) "U struct complex { double R; double I; };\012V" (43) " double;\012" U 0:0:0:2500 Dataset {256/512} Data: printing of compound data types is not implemented yet V 0:0:0:3928 Dataset {256/512} Data: (0) 0, 0.015625, 0.03125, 0.046875, 0.0625, (5) 0.078125, 0.09375, 0.109375, 0.125, 0.140625, (10) 0.15625, 0.171875, 0.1875, 0.203125, 0.21875, (15) 0.234375, 0.25, 0.265625, 0.28125, 0.296875, ...
* [svn-r529] Changes since 19980722Robb Matzke1998-07-221-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c Handle hid_t of type H5_TEMPBUF, arguments usually called tbuf_id. Added array tracing where the array rank is stored in a simple data space. Just use the name of the data space argument when declaring the array argument: herr_t H5Sselect_hyperslab (hid_t space_id, H5S_seloper_t op, const hssize_t start[/*space_id*/], const hsize_t _stride[/*space_id*/], const hsize_t count[/*space_id*/], const hsize_t _block[/*space_id*/]) and when the program runs you'll see array values printed: H5Sselect_hyperslab(space=218103813, op=H5S_SELECT_SET, start=0xbfffef4c {0}, _stride=NULL, count=0xbfffef44 {64}, _block=NULL) = SUCCEED; Added more symbolic data types to the tracing output. ./src/H5A.c ./src/H5Apublic.h ./src/H5D.c ./src/H5Dpublic.h ./src/H5F.c ./src/H5Fpublic.h ./src/H5G.c ./src/H5Gpublic.h ./src/H5P.c ./src/H5Ppublic.h ./src/H5S.c ./src/H5Sall.c ./src/H5Shyper.c ./src/H5Spoint.c ./src/H5Spublic.h ./src/H5Sselect.c ./src/H5Ssimp.c ./src/H5TB.c ./src/H5V.c Changed some API argument names to be more consistent with other API functions and to produce better tracing output. Reformatted some long lines. Indented printf statements. ./tools/h5ls.c Fixed warnings about unsigned vs. signed comparisons.
* [svn-r522] Changes since 19980720Robb Matzke1998-07-201-0/+179
| | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Gpublic.h ./src/H5Gprivate.h ./src/H5G.c ./test/dsets.c ./doc/html/Groups.html Added the H5Gset_comment() and H5Gget_comment() functions described in an earlier e-mail. ./src/H5.c Fixed a bug in the tracing code that caused certain data space enum types to not be printed. Nested case statements can get confusing to the eyes! ./tools/h5ls.c Prints the first 50 bytes or so of object comments.
* [svn-r460] Changes since 19980707Robb Matzke1998-07-071-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/trace ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5P.c ./src/H5Pprivate.h ./src/H5S.c ./src/H5T.c Output-only arguments have their addresses printed during tracing and added symbolic output for the H5F_driver_t arguments. That's another reason that we should be careful to add `/*out*/' after arguments that are output-only and `/*in,out*/' after arguments that are used for both input and output values. No internal function calls H5Pget_class() anymore. ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tpublic.h Added H5Tget_overflow() and H5Tset_overflow() so the application can query or set a function that will be called whenever an overflow occurs. Implemented as documented in previous e-mail except the overflow handler gets two buffers: one that contains the source value and one to receive the optional destination value. ./test/dtypes.c Tests overflow handler. ./src/H5.c We have to declare fdopen() because I'm getting errors when compiling on Irix64 even though we include <stdio.h> as documented in the fdopen() man page.
* [svn-r437] Changes since 19980612Robb Matzke1998-06-301-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Tbit.c ./src/H5Tpkg.h Fixed a bug in H5T_bit_copy(). Added H5T_bit_get_d() and H5T_bit_set_d() which treat portions of a bit vector as an unsigned integer. Added H5T_bit_inc() that increments part of a bit vector and returns an indication of overflow. ./src/H5Tconv.c ./src/H5Tpkg.h ./test/dtypes.c Added a slow general floating point conversion which works so far on Intel, MIPS, and DEC but the test is turned off because a cast from double to float will cause a SIGFPE on some systems if an overflow occurs. Added fast hardware conversions between native floating point types. This function is also subject to the SIGFPE problem. ./src/H5detect.c Removed the exponent bias adjustment when the significand isn't normalized. This is now handled in the conversion functions instead. ./src/H5T.c Register new conversion functions. Plugged a memory leak in the library termination code. ./RELEASE Added a list of major changes since the first alpha. ./src/H5.c ./src/H5private.h ./src/H5A.c ./src/H5AC.c ./src/H5D.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5G.c ./src/H5Gprivate.h ./src/H5HG.c ./src/H5O.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c Fixed various compiler warnings on Irix64. ./src/H5MM.c Added PABLO_MASK to this file. ./test/chunk.c Removed a warning about memcpy().
* [svn-r435] ./INSTALLRobb Matzke1998-06-231-5/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./INSTALL_MAINT ./README ./RELEASE Partially updated for second alpha, but haven't updated version numbers yet. ./src/H5.c ./src/H5A.c ./src/H5AC.c ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5I.c ./src/H5MM.c ./src/H5MMprivate.h ./src/H5O.c ./src/H5Oattr.c ./src/H5Ocomp.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5S.c ./src/H5T.c ./src/H5Tconv.c ./src/H5detect.c ./test/hyperslab.c ./test/istore.c Changed memory allocation functions so they fail instead of dumping core. The `x' was removed from the name to remind us of that: H5MM_xmalloc() -> H5MM_malloc(), etc. H5MM_calloc() takes one argument like H5MM_malloc() instead of two like calloc() because we almost always called it with `1' for one of the arguments anyway. The only difference between the two functions is that H5MM_calloc() returns memory which is initialized to zero. ./src/H5Gent.c ./src/H5Gprivate.h Removed H5G_ent_calloc() since it wasn't used. ./src/H5Fistore.c Fixed a bug found by Albert. Thanks, Albert! This fix combined with the changes to memory allocation prevent the library from failing an assertion if the application uses an unreasonable size for chunks (like Alberts 10000x10000x4). ./src/H5MF.c ./src/H5MFprivate.h Changed H5MF_free() to H5MF_xfree() since calling it with an undefined address is allowed.
* [svn-r429] Changes since 19980616Robb Matzke1998-06-171-6/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/tracing.html NEW This entire update is to make it possible for the library to print the name, arguments, and return value of every API call without requiring any extra work from developers or app programmers. This file describes how this all works. ./configure.in Added the `--enable-tracing' switch. If you use it then the library will include code to print API function names, argument names and values, and function return values. However, you must then turn on the tracing by setting the HDF5_TRACE environment variable to a file descriptor number. The default is `--disable-tracing' since enabling it causes a slight increase in library size and a slowdown resulting from an extra function call for each API function call (I couldn't even measure the slowdown :-) ./bin/trace NEW A perl script that synchronizes the H5TRACE() macro calls in the *.c files with the function return type and formal argument names and types. If you use GNU make and gcc then this will be done automatically, otherwise just invoke this script with the names of one or more .c files. You could do it by hand to, but encoding argument types is a little tricky at first. ./config/commence.in Added the $(TRACE) macro, which defaults to the no-op. Added -D_POSIX_SOURCE to the compiler command line. ./src/Makefile.in Override the default for $(TRACE). ./config/depend.in Automatically calls $(TRACE) to synchronize the H5TRACE() macros in any source file that changed. As with makefile dependencies, one way to force synchronization of all files is to remove the `.depend' file. ./MANIFEST Added new files. ./src/H5Eprivate.h Modified HRETURN_ERROR() and HRETURN() for tracing. ./src/H5.c ./src/H5private.h This is where the real tracing work really happens, in H5_trace(). ./src/H5A.c ./src/H5D.c ./src/H5G.c ./src/H5P.c ./src/H5S.c ./src/H5Z.c Added H5TRACE() calls to all API functions. You don't really need these changes if you don't want to merge your stuff because they can be generated automatically by going to the hdf5/src directory and saying ../bin/trace *.c ./src/H5T.c Added H5TRACE() calls. Other stuff below. ./src/H5E.c ./src/H5Epublic.h Added H5TRACE() calls. Created a type H5E_auto_t for the `func' argument of H5Eset_auto() and H5Eget_auto() to make those arguments easier to parse for tracing. It should also make it clearer for users that don't know how to read complicated ANSI data types. ./src/H5F.c Added H5TRACE() calls. Changed a couple `uintn' argument types in API functions to `unsigned int' since `uintn' part of the API. Changed a few "can't" and "cant" error messages to "unable to". ./src/H5Ipublic.h Removed H5_DIRECTORY from the H5I_group_t enum. It wasn't used anywhere. ./src/H5Tconv.c Removed an unused label. ./src/H5Fistore.c ./src/H5Oattr.c ./src/H5Odtype.c ./src/H5T.c ./test/dsets.c ./test/dtypes.c Fixed a warning about a variable possibly used before it's initialized. Added __unused__ to turn off some unused argument warnings that pop up when debugging is turned off and optimizations are turned on.
* [svn-r384] Changes since 19980430Robb Matzke1998-05-011-1/+3
| | | | | | | | ---------------------- ./src/H5G.c Fixed a read/write of free memory that my home-brew purify doesn't catch (yet :-)
* [svn-r383] ./src/H5A.cRobb Matzke1998-05-011-2/+1
| | | | | | | | | | | | | | | | | ./src/H5F.c ./src/H5G.c ./src/H5O.c ./src/H5Osdspace.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Z.c ./test/big.c ./test/cmpd_dset.c ./test/dsets.c ./test/extend.c ./test/istore.c Now that I have a home-grown version of Purify I fixed all the leaks in all the test files.
* [svn-r378] Merged Robb's and my memory leak fixes into one set of common fixes.Quincey Koziol1998-04-281-0/+2
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* [svn-r346] Changes since 19980410Robb Matzke1998-04-141-16/+412
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/H5.format.html ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gprivate.h ./src/h5ls.c ./test/Makefile.in Symbolic links are now supported. The ./test/links program will create a `links.h5' file that demonstrates hard links, soft links, dangling links, and recursive links. A symbolic link is a symbol table entity and doesn't have an object header. It's format is described in H5.format.hml. ./src/H5G.c ./src/H5Gpublic.h ./src/h5ls.c Implemented H5Gstat() and H5Gget_linkval() as documented by Quincey. The `H5G_type_t type' field of `H5G_stat_t' was changed to `int type' because H5G_type_t was already used and the `type' data type should be open-ended. ./src/H5Ffamily.c Removed an incorrect diagnostic message. ./test/big.c Added read/write calls to test partial I/O to big contiguous datasets. With no arguments it writes to a dataset and prints the list of points written which should be redirected to a file. With an argument (the name of a file containing the stdout of a run with no arguments) values are read from the dataset. One would typically say `big >x && big x'.
* [svn-r338] Changes since 19980407Robb Matzke1998-04-081-5/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5B.c ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5HL.c ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5Ppublic.h ./src/H5S.c ./src/H5Sprivate.h ./src/H5Spublic.h ./src/H5Ssimp.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5V.c ./src/H5Vprivate.h ./src/H5private.h ./src/H5public.h ./src/h5ls.c ./test/cmpd_dset.c ./test/dsets.c ./test/extend.c ./test/external.c ./test/hyperslab.c ./test/iopipe.c ./test/istore.c ./test/shtype.c ./test/tfile.c ./test/th5s.c Anything having to do with the size of a dataset now uses the types `hsize_t' and `hssize_t' which must be the same size and at least as large as `size_t'. This isn't fully tested yet, so hsize_t and hssize_t are defined as size_t and ssize_t in H5public.h. Setting them to larger values will trip up gcc versions less than 2.8.1 on x86 platforms. Documented unused function formals with `__unused__' before the formal name. This also has the effect of supressing warning messages for gcc since it's defined to be `__attribute__((unused))' in the H5private.h file. ./src/debug.c ./src/h5ls.c If the file name contains a `%' then the file is opened as a file family with H5P_DEFAULT for the file member access property list. ./src/h5ls.c The group name is optional, defaulting to `/'. ./src/hdf5.h Added some missing public header files.
* [svn-r337] Changes since 19980403Robb Matzke1998-04-071-0/+180
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in Moved setting of compiler warning switches earlier in the file. Turned on more warning switches to gcc. ./config/linux Prints a warning if the gcc version is less than 2.8.1 since that version has problems with register allocation for `long long'. ./html/Datatypes.html Documented sharing of data types between datasets. ./src/H5G.c ./src/H5Gpublic.h Implemented H5Gmove(), H5Glink() and H5Gunlink() for hard links. Still have soft links to do. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5D.c ./src/H5E.c ./src/H5Eprivate.h ./src/H5F.c ./src/H5Farray.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fpublic.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5HG.c ./src/H5HL.c ./src/H5HLprivate.h ./src/H5I.c ./src/H5Iprivate.h ./src/H5MM.c ./src/H5MMprivate.h ./src/H5O.c ./src/H5Oefl.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Oshared.c ./src/H5Ostab.c ./src/H5P.c ./src/H5S.c ./src/H5Ssimp.c ./src/H5T.c ./src/H5Tconv.c ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5V.c ./src/H5Vprivate.h ./src/H5detect.c ./src/h5ls.c ./test/cmpd_dset.c ./test/dsets.c ./test/external.c ./test/hyperslab.c ./test/iopipe.c ./test/istore.c ./test/shtype.c ./test/tstab.c Fixed comparisons between signed and unsigned values. Fixed warnings about unused function arguments.
* [svn-r333] Changes since 19980324Robb Matzke1998-03-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST ./src/H5HG.c [new] ./src/H5HGprivate.h [new] ./src/H5HGpublic.h [new] ./src/Makefile.in Added global heaps, H5HG. This compiles but is untested. ./src/H5D.c ./src/H5G.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5HL.c [renamed from H5H.c] ./src/H5HLprivate.h [renamed from H5Hprivate.h] ./src/H5HLpublic.h [renamed from H5Hpublic.h] ./src/H5Oefl.c ./src/Makefile.in ./src/hdf5.h ./test/theap.c Renamed local heaps from H5H to H5HL. ./src/H5AC.c ./src/H5ACprivate.h ./src/debug.c Added debugging support for global heap collections. ./html/H5.format.html Ripped out the old small object heap documentation and added documentation for the new global heap. ./html/H5.api.html ./src/H5P.c ./src/H5Ppublic.h ./src/H5F.c ./src/H5Fprivate.h ./src/H5private.h The H5Pget_version() function no longer returns a small object heap version number. Instead, each collection of the global heap has its own version number instead of a single number in the file boot block. ./bin/release Omit files marked for removal by CVS even though the removal hasn't been committed yet. ./test/iopipe.c Removed warnings about casting unsigned int to double on Irix64. ./MANIFEST Removed ./test/testpar/phdf5sup.c
* [svn-r329] Changes since 19980324Robb Matzke1998-03-241-348/+373
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5D.c Zero element requests for H5Dread() and H5Dwrite() succeed. ./src/H5F.c ./src/H5Fprivate.h All files will have a root group. This greatly simplifies the library at the expense of ~1k extra bytes in files that have only one object. ./src/H5D.c ./src/H5Dprivate.h ./html/Groups.html Functions that used to take a file ID and an object name can now take a group ID instead of a file ID. This doesn't change the API, only it's documentation. ./src/H5G.c ./src/H5Gprivate.h ./src/H5O.c ./src/H5Oprivate.h Removed extra file arguments from some internal functions since the file pointer can be found from the group pointer or a symbol table entry (ent->file or H5G_fileof(group)). Besides, when we eventually implement mounting one file on another, H5G_namei() might return a different file than what you gave it, and that file is part of the returned symbol table entry. ./src/H5G.c Fixed bug with `.' appearing in a name. It used to hang the library. ./src/Makefile.in ./src/h5ls.c [NEW] ./MANIFEST Added `h5ls' a simple program that takes a file name and a directory and lists the contents of that directory using H5Giterate(). ./test/istore.c Changed an argument to H5G_create(). ./test/tstab.c Removed test_1 which was testing that files with a single object don't have a root group. This no longer applies.
* [svn-r328] Changes since 19980318Robb Matzke1998-03-241-23/+102
| | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5B.c ./src/H5Bprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gpublic.h ./src/H5Gstab.c Implemented H5Giterate(). However, since most functions can't take a group ID in place of a file ID yet, there's not a whole lot that the operator can do besides print the name or something. ./test/H5O.c Fixed writing of four uninitialized bytes to the file as part of an object header. ./test/istore.c For some reason, `mpirun -np 1 istore' results in extra arguments on the command line that istore doesn't understand. I'm probably forgetting to call some MPI function in main(). Albert, Kim? So I commented out the `exit(1)' for the time being.
* [svn-r324] Change H5A (atoms) to H5I (IDs)Quincey Koziol1998-03-171-18/+18
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* [svn-r302] Changes since 19980227Robb Matzke1998-02-281-5/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Errors.html [NEW] ./html/H5.user.html ./MANIFEST Documents the new error handling interface and gives examples. ./src/H5.c ./src/H5private.h ./src/H5Apublic.h ./src/H5E.c ./src/H5Eprivate.h ./src/H5Epublic.h Rewrote error handling. Got rid of `push' overloading and added a few API functions. The error stack is statically allocated and not entered into H5A, simplifying error handling within the error handler. Rudimentary support for threads. Changed the names of some errors. ./src/H5G.c ./src/H5Gnode.c ./src/H5H.c ./src/H5O.c ./src/H5T.c Changed H5ECLEAR to H5E_clear(). ./src/Makefile.in Alphabetized source list. ./test/dsets.c Turned off error reporting around functions that are expected to fail. Error messages are sent to stdout. ./test/testhdf5.c ./test/testhdf5.h Turned off automatic error reporting since this file mostly calls internal functions and does its own error reporting.
* [svn-r299] Changes since 19980224Robb Matzke1998-02-261-4/+9
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./html/Files.html Added a few details for some of the new H5Pset/get functions. ./src/H5F.c ./src/H5Fpublic.h Fixed automatic closing of files on exit(). Added public H5F_ACC_DEBUG. Using it to create or open a file turns on debugging for that file, which currently just prints cache statistics when the file is closed. ./src/H5G.c An error is returned if one tries to set the current working group to something other than a group. ./src/H5Gnode.c Fixed a symbol table bug. Under certain circumstances it was possible to enter a symbol in such a way that lookup of that symbol failed. A bug report was sent to hdf5dev. ./src/H5P.c ./src/H5Ppublic.h Added the H5Pget_...() functions for file drivers. The H5Pget_mpi() is a no-op that always fails.
* [svn-r230] Changes were actually made by Robb. I am commiting them for himAlbert Cheng1998-02-091-3/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | while he is visiting LLNL. I changed the default creation template offset and length to 4. Will fix the problem later. Changes since 19980205 ---------------------- ./src/H5H.c ./src/H5Hprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Olayout.c ./src/H5Oname.c ./src/H5Onull.c ./src/H5Oprivate.h ./src/H5Odspace.c ./src/H5Ostab.c ./src/debug.c ./html/H5.format.html Added an extra 4-byte field after the heap magic number for alignment on the DEC alpha. Changed object header message alignment to 8-bytes. ./src/H5F.c ./src/H5Farray.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5O.c ./src/H5Odtype.c ./src/H5P.c ./src/H5Pprivate.h ./src/H5T.c ./src/H5Tconv.c ./src/H5Tpkg.h ./src/H5Tpublic.h ./src/H5V.c ./src/H5detect.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/hyperslab.c ./test/istore.c ./test/th5p.c ./test/theap.c Fixed a few irix64 warnings regarding size_t vs. int, variables set but not used, printf formats ./config/irix64 Added `-woff 1196' to get rid of errors about __vfork() being implicitly defined in a system header file. ./src/H5B.c Fixed a stack alignment problem.
* [svn-r193] Changes since 19980128Robb Matzke1998-01-281-6/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Added new config files. ./src/H5private.h Changed FUNC_ENTER() so it calls H5Eclear() for all API functions but not for any private functions. It also prints the names of all API functions on file 55 (just for the prototype) so we can get a list of API functions called with the Bourne shell commands like: ./testhdf5 55>api_list or ./testhdf5 55>&1 1>/dev/null 2>&1 | less Otherwise the names are silently discarded. ./src/H5.c ./src/H5C.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5M.c ./src/H5P.c ./src/H5T.c Removed `H5ECLEAR' from lots of places in the source code. ./src/H5E.c ./src/H5Eprivate.h Recursion is a problem here, so to disable a call to H5Eclear() from FUNC_ENTER just define a local variable like this before you call FUNC_ENTER: const H5E_clearable_g = FALSE; Unfortunately this results in a warning: declaration of `H5E_clearable_g' shadows global declaration. Good thing it's only used in two places.
* [svn-r188] Changed hbool_t from an enum to 'int' and removed ↵Quincey Koziol1998-01-281-2/+2
| | | | | | | | | | BTRUE/BFALSE/BFAIL from code. Changed interface to the H5P..hyperslab functions to 'int' instead of 'size_t'. Cleaned up lots of warnings on IRIX 6.2 platform. Minor other tweaks to get to a mostly clean build on the SGI. It still whines about 'long long' being non-standard and some "pointless comparison of unsigned with 0" but those aren't big problems.
* [svn-r178] Changes since 19980127Robb Matzke1998-01-281-554/+554
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./Makefile.in ./config/commence.in With GNU make you can now use `-j' and `-l' options and things get built correctly. I can do a `make -j -l6 test' from a clean hdf5 source tree (after configure) in 45 seconds (8 to build dependencies, 26 to compile everything, and 11 to run the tests). ./src/H5Gnode.c Removed a comment that no longer applies. ./src/H5P.c ./src/H5Pprivate.h ./src/H5Ppublic.h Changed H5Pselect_hyperslab() to H5Pset_hyperslab() and added H5Pget_hyperslab() and H5P_get_hyperslab(). Replaced a couple short memset() calls with a for loop. Removed `if (foo!=NULL)' from around H5MM_xfree() calls. Clear hslab_def when the hyperslab disappears. ./src/H5Tpublic.h Removed trailing enum comma.
* [svn-r164] Changes since 19980122Robb Matzke1998-01-221-17/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/*.h Fixed indentation where indent(1) screwed up. This isn't by any means the final say, but it's better than it was. ./src/H5A.c ./src/H5Aprivate.h ./src/H5Apublic.h ./src/H5C.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5G.c ./src/H5M.c ./src/H5P.c ./src/H5T.c ./src/H5Tconv.c ./src/debug.c ./test/dtypes.c ./test/istore.c ./test/theap.c ./test/tohdr.c ./test/tstab.c Removed some atom functions from the API and made them library-scope. Also changed some names by removing the redundant `atom' from the name and by adding a `_' after the `H5A'.
* [svn-r157] Reformatted code with indent...Quincey Koziol1998-01-161-948/+902
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* [svn-r151] Changes since 19980105Robb Matzke1998-01-071-61/+57
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/freebsd2.2.1 ./config/linux Added -UH5O_DEBUG to the debug flags. Turn this on to get lots of lines on stderr to show what objects are opened and closed. ./src/H5C.o ./src/H5Cpublic.h ./test/dsets.c ./test/tfile.c Split H5Cget_prop() and H5Cset_prop() into functions for each property. ./src/H5D.c ./src/H5Dpublic.h ./src/H5Gstab.c ./src/H5O.c ./src/H5Ocont.c ./src/H5Ocstore.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Oistore.c ./src/H5Oname.c ./src/H5Onull.c ./src/H5Oprivate.h ./src/H5Osdspace.c ./src/H5Ostab.c ./src/H5P.c ./src/istore.c ./test/tohdr.c Object header functions now understand constant vs. non-constant messages. ./src/H5F.c ./src/H5Fprivate.h The file OID can be closed before other OID's. ./src/H5Flow.c H5F_addr_defined() is a macro in this file. ./src/H5G.c ./src/H5Gpublic.h ./test/tstab.c A current working group cannot be deleted. ./src/H5Gent.c ./src/H5Gpkg.h Removed unused functionality. ./src/H5public.h Includes <sys/types.h> for size_t.
* [svn-r150] Changes since 19971219Robb Matzke1998-01-061-560/+583
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5private.h Changed HDF5_MAJOR_VERSION to 5 ./src/H5Aprivate.h ./src/H5Apublic.h Added group atoms. ./src/H5D.c ./src/H5P.c ./test/istore.c ./test/tohdr.c ./test/tstab.c Updated for symbol table interface changes. ./src/H5F.c ./src/H5Fprivate.h Simpler handling of special case files: empty files and files with a single object. ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5Gshad.c (DELETED) ./src/H5Gstab.c ./src/Makefile.in Removed shadows, simplifying code. Symbol table entries are allowed to cache only constant meta data. Fixed naming. ./src/H5O.c ./src/H5Oprivate.h Access to object headers is always done through a symbol table entry instead of a file address. Added stubs for opening and closing object headers to be used when deletion is implemented.
* [svn-r145] ./src/H5Osdtyp.c -> H5Odtype.cRobb Matzke1997-12-111-89/+86
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/H5Osdim.c -> H5Osdspace.c ./src/Makefile.in Changed the names of these files to better reflect what they actually do. ./src/H5.c ./src/H5AC.c ./src/H5B.c ./src/H5C.c ./src/H5D.c ./src/H5E.c ./src/H5Eprivate.h ./src/H5Epublic.h ./src/H5F.c ./src/H5Fcore.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gshad.c ./src/H5Gstab.c ./src/H5H.c ./src/H5M.c ./src/H5MF.c ./src/H5O.c ./src/H5Osdtyp.c (./src/H5Odtype.c) ./src/H5P.c ./src/H5T.c ./src/H5detect.c ./src/H5private.h Added an argument to the HRETURN_ERROR(), HGOTO_ERROR(), and HERROR() macros which is a string error message. This allows us to give extra information which can't be represented by the major and minor error numbers. This information was previously in comments just before or after the macro call. The string isn't currently used, but I'm planning to change the test files so they print an error trace when something fails. This should make debugging a little faster since it's often obvious what's wrong if we could just see the error stack without even having to start a debugger.
* [svn-r139] ./src/*.[ch]Robb Matzke1997-12-101-72/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Removed the interface initialization argument from FUNC_ENTER() and made it a locally-defined preprocessor symbol, INTERFACE_INIT. Changed `offset' to `address' and `length' to `size' in documentation so it's more consistent. `Offset' still appears occassionally when it refers to a byte offset within some other data structure. Moved interface termination function prototypes from public header files to .c files and made them static. ./src/H5.c ./src/H5public.h Added H5init() because it's possible that the predefined data types are not initialized. This happens only if the first call to the hdf5 library passes a predefined data type symbol as an argument. There should be some way to fix this... ./src/H5A.c ./src/H5Aprivate.h ./src/H5Apublic.h The free_func returns SUCCEED or FAIL, although the return value is ignored by H5A. This is so we can use the various H5*_close() functions to free things. H5Ainc_ref() and H5Adec_ref() are no longer public. Many of the other atom functions should also be made private, but I'll save that for later... Added additional template groups called H5_TEMPLATE_0 through H5_TEMPLATE_7 that are used by the various template subclasses. Increased the number of bits used for atom groups to prevent negative atoms. ./src/H5AC.c ./src/H5ACprivate.h Changed H5AC_new() to H5AC_create() to make names more consistent. ./src/H5B.c ./src/H5Bprivate.h Changed H5B_new() to H5B_create() to make names more consistent. ./src/H5C.c ./src/H5Cprivate.h ./src/H5Cpublic.h Now supports multiple subclasses of templates, although it's done with big switch statements. The default values for templates are defined in the source file to which that template belongs. This got rid of lots of needless preprocessor constants. Added H5Ccreate() to create a new template. Changed H5C_release() to H5Cclose() to make the naming more consistent. ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h Enhanced to use the new dataset interface, and uses the enhanced data type and data space interfaces, which haven't been completely implemented. The dataset interface doesn't handle non-contiguous storage, compression, or data type and space conversions yet. ./src/H5F.c ./src/H5Fprivate.h ./src/H5Fpublic.h Removed H5Fflush() since just calls H5F_flush(), which doesn't do what the user would probably think it does, namely, flush everything. It only flushes those things sitting in the H5AC cache and the boot block. Changed the `file_create_parms' field of H5F_low_t to just `create_parms' since the `file' part is obvious. ./src/H5Fistore.c Added some support for external files. Mostly just in the file format and not supported much by the library yet. I need to finish some dataset functions first. Changed H5F_istore_new() to H5F_istore_create() to make names more uniform across packages. ./src/H5Flow.c Flushing a file causes the file to be physically extended to the logical eof. This prevents H5F_open() from thinking a file has been truncated. Most of the time the file will already be that large, and when it isn't Unix will often just allocate the final block anyway. ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gstab.c Removed H5G_basename() Removed (temporarily) data type information from symbol table entries and renamed H5G_CACHED_SDATA to H5G_CACHED_SDSPACE to reflect that it's a simple data space and has nothing to do with raw data. Changed H5G_node_new() to H5G_node_create() and H5G_stab_new() to H5G_stab_create() to make names more uniform across packages. Fixed an undefined address bug that happens when H5G_node_debug() program doesn't pass enough info to H5G_node_load(). ./src/H5H.c ./src/H5Hprivate.h Changed H5H_new() to H5H_create() to make the names more uniform across packages. ./src/H5M.c ./src/H5Mprivate.h ./src/H5Mpublic.h Nulled all the create functions. Most of the other callbacks are to public functions. Removed H5Mcreate(). Changed hobjtype_t to group_t since it has to be the same thing anyway. ./src/H5O.c ./src/H5Oprivate.h ./src/H5Osdim.c ./src/H5Osdtyp.c Changed H5O_SIM_DIM to H5O_SDSPACE (simple data space) since `simple data space' is its official name, not `simple dimensions'. Will eventually add H5O_CDSPACE for comples data spaces. Changed _sim_dim_ to _dspace_. Replaced H5O_SIM_DTYPE and the compound data type messages with a single H5O_DTYPE message. Changed _sim_dtype_ to _dtype_. Changed H5O_STD_STORE to H5O_CSTORE (contiguous storage) since contiguous storage is not necessarily standard. Changed _std_store_ to _cstore_ in H5Ocstore.c Added the H5O_EFL (external file list) message. Changed H5O_new() to H5O_create() to make names more uniform across packages. ./src/H5Oefl.c NEW External file list message for specifying which non-hdf5 files contain raw data for a dataset. ./src/H5P.c ./src/H5Pprivate.h ./src/H5Ppublic.h Renamed and moved data structures to make the names conform to our naming scheme. ./src/H5T.c ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5Tpkg.h NEW Data structures redesigned to be more flexible. The interface was redesigned to make it more regular and to make some names more uniform across packages. ./src/H5detect.c Output was changed to produce a file that conforms to the hdf5 coding standard. ./src/Makefile.in Generates H5Tinit.c by running H5detect. ./src/debug.c Moved command argument processing.
* [svn-r136] ./MANIFESTRobb Matzke1997-11-141-20/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/Makefile.in Added H5Ffamily.c and H5Fsplit.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Added `const' to sublass arguments. ./src/H5F.c ./src/H5Flow.c ./src/H5Fsec2.c Make sure file buffers get flushed during a call to H5Fflush(). Check for overflow in address encoding and decoding. ./src/H5Ffam.c ./src/H5Fprivate.c ./test/istore.c Implementation of file families so 32-bit machines can access 64-bit files. ./src/H5Oprivate.h Removed H5O_NO_ADDR constant. ./config/freebsd2.2.1 ./config/linux Added -DH5G_DEBUG and -DH5F_DEBUG to the list of debugging flags. ./html/H5.format.html Changed some <offset>-sized things to <length>-sized things. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5C.c ./src/H5D.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gshad.c ./src/H5Gstab.c ./src/H5H.c ./src/H5Hprivate.h ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Oistore.c ./src/H5Oprivate.h ./src/H5Ostab.c ./src/H5Ostdst.c ./src/H5pivate.h ./src/debug.c ./test/istore.c ./test/theap.c ./test/tohdr.c ./test/tstab.c Lots of changes caused by generalizing addresses. The haddr_t is now a struct, so you can no longer perform arithmetic on it. But since it's small, simple, and often used, storage is allocated like with an integer. But we always pass them around by reference. That is, when using an address in another struct, allocate space: struct my_struct { char *name; haddr_t address; } x; But when passing it to a function, pass by reference: H5F_addr_print (stderr, &(x.address)); Addresses should be initialized with H5F_addr_undef (&(x.address)); Functions for operating on addresses are in H5Flow.c and begin with H5F_addr_... Functions never return haddr_t or haddr_t*; they always pass them through arguments instead. A function that returns an address through an argument does so with its last argument and it is marked with `/*out*/'. Calls to such functions also mark output-only arguments with `/*out*/' ./src/H5Fsplit.c (new) A two-member family where all meta data goes in the first member and all raw data goes in the second member. ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5H.c ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c Differentiate between meta data storage and raw data storage. Provide a mechanism so that the file driver can extend the file to allocate more memory. ./src/H5E.c ./src/H5Epublic.c Added the error H5E_TRUNCATED to be reported when the file is shorter than the length recorded in the boot block. ./src/H5F.c Added H5F_locate_signature() so we only do it in one place now. ./INSTALL ./INSTALL_MAINT Just a couple clarifications. ./html/ExternalFiles.html ./html/storage.html Documents how external files work. ./test/hyperslab.c ./test/istore.c Fixed printf's on 64-bit machines. ./test/istore.c Added ifdef's to test the split file driver.
* [svn-r129] Changes since 19970916Robb Matzke1997-10-201-182/+617
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/depend.in Fixed backslashes in sed script because the H5Gnode.c dependency info was disappearing. You'll have to rerun config.status to rebuild the Makefiles unless you use gnu make. ./config/conclude.in Also removes emacs backup files, TAGS, and svf backup files. ./config/linux Grouped gcc flags and added provisions for debugging vs. production. ./html/H5.format.html Updated messages 0x0008, 0x0009, and 0x000A. ./html/storage.html Documentation describing storage schemes. ./src/Makefile.in ./test/Makefile.in New source files. ./src/H5A.c ./src/H5Apublic.h ./src/H5C.c Changed VOIDP to void* in a couple places. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h ./src/H5H.c ./src/H5O.c Removed `const' from some variables because H5G_node_found() wanted to modify it's udata argument. Removing const there caused it to cascade to these other locations. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5H.c ./src/H5O.c Added an extra argument to H5AC_find_f() and H5AC_protect(). This arg gets passed to the load() method. Also added an extra argument to the H5AC_find() macro. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra argument passed to the sizeof_rkey() method. ./src/H5Fprivate.c ./src/H5Fistore.c (new) Added indexed I/O operations. ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h Beginning to add H5G_open/close and related bug fixes. ./src/H5Oprivate.h ./src/H5Oistore.c (new) Added the H5O_ISTORE messsage (0x0008) for indexed storage of objects. ./src/H5private.h Added extra braces around both sides of the FUNC_ENTER() and FUNC_LEAVE() macros so FUNC_ENTER() can appear before declarations or after executable statements the second case is used by H5G_namei() to initialize output arguments to sane values before FUNC_ENTER() might return failure. int f () { int decl1; printf ("This happens before FUNC_ENTER()\n"); FUNC_ENTER (...); int another_declaration; ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra arguments for key encoding and decoding. ./src/H5E.c ./src/H5Epublic.h ./src/H5Fistore.c ./src/H5Oistore.c ./src/H5Oprivate.h Indexed, chunked, sparse storage (not ready for general consumption yet). ./src/H5V.c (new) ./src/H5Vprivate.h (new) ./test/hyperslab.c (new) Vector, array, and hyperslab functions. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5Gnode.c ./src/H5V.c ./src/H5Vprivate.h ./test/hyperslab.c Added functionality for indexed storage. ./src/H5F.c Fixed problems with seek optimizing. Recommend we disable it until we can implement it in the file/address class since all of HDF5 must be aware of it. ./src/H5O.c Fixed comeent speling erorr :-) ./MANIFEST Added new files. ./config/conclude.in Added the word `Testing' to the test cases. So if a test program is called hyperslab then the make output will contain the line `Testing hyperslab'. ./config/linux The default file I/O library is Posix section 2 on my linux machine so I can do some I/O performance testing. ./src/H5C.c ./src/H5Cprivate.h ./src/H5Cpublic.h Added ability to set size of indexed-storage B-tree. ./src/H5D.c ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5Fprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5Gshad.c ./src/H5Gstab.c ./test/stab.c Changed `directory' to `group' in numerous places. ./src/H5private.h The FILELIB constant can be set on the compile command-line. ./src/istore.c NEW Tests for indexed storage.
* [svn-r111] Changed hdf5_file_t to H5F_t, split data struct ito two halves, fixedRobb Matzke1997-09-241-39/+39
| | | | problems when opening the same file more than once.
* [svn-r106] Fixed some symbol table bugs. Fixed a free memory read in H5Osdim.c.Robb Matzke1997-09-221-825/+301
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* [svn-r100] Interim checkin for purify. Also contains H5G shadow stuff, changesRobb Matzke1997-09-191-227/+235
| | | | | | to int64 encode/decode to fix purify on 32-bit systems, changes to H5O_modify, changes to H5D.c to use H5F_open/close(), etc. Documentation will be mailed shortly...
* [svn-r91] Bug fixes for multiple datasets in the file. Interim checkin, ↵Quincey Koziol1997-09-161-2/+2
| | | | | | theres still a problem with the simple dimensionality caching.
* [svn-r83] Bug fixed in H5G_namei().Robb Matzke1997-09-151-0/+5
| | | | | Arg type changes in H5Bprivate.h Sorted Makefile.in
* [svn-r71] Lost my changelog, but basically some new caching functions.Robb Matzke1997-09-101-18/+18
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* [svn-r61] ./src/H5.cRobb Matzke1997-09-021-26/+111
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Changed atexit() to HDatexit(). ./src/H5AC.c Changed qsort() to HDqsort(). ./src/H5B.c Changed memcmp() to HDmemcmp(). ./src/H5E.c ./src/H5M.c Added parentheses around indirect function calls so that checkposix doesn't complain and to advertise that it's an indirect function call. ./src/H5F.c ./src/H5G.c Added errors field to each function prologue to test the script mentioned above. ./src/H5H.c Changed fputc() to HDfputc(). ./src/H5MM.c ./src/H5MMprivate.h The argument for H5MM_xfree() is a pointer to a constant even though the argument to free() isn't. This reduces the number of warnings in other parts of the code but creates a new warning in this file. ./src/H5O.c Plugged a few memory leaks that happen during error handling. ./src/H5Oname.c ./src/debug.c Added `HD' to the beginning of some posix functions.
* [svn-r55] ./src/H5F.cRobb Matzke1997-08-291-3/+87
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Added H5Fflush() and H5F_flush() which flush (and optionally invalidate the cache) and flush the file boot block. H5Fcreate() calls H5F_flush() to output the boot block. H5Fclose() calls H5F_flush() to update the boot block. H5F_debug() prints the root symbol table entry. ./src/H5Fpublic.h Added H5Fflush() prototype. ./src/H5G.c The name message is removed when an object moves from the root object position into a directory. Added H5G_debug() to print a symbol table entry. Most of the code was just moved from H5G_node_debug(). ./src/H5Gnode.c Moved some debugging code into H5G_debug(). ./src/H5Gprivate.c Added H5G_debug() prototype. ./src/H5O.c Implemented H5O_remove(). Added identifiers for H5O_SIM_DIM and H5O_SIM_DTYPE so they can be read from files. H5O_load() combines adjacent null messages for better memory management. ./src/H5Oprivate.h Changed minimum header data block size from 16 to 32 bytes. Changed prototype for H5O_remove()
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