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* [svn-r15221] Description:Quincey Koziol2008-06-161-3/+483
| | | | | | | | | | | | | | | | | | Bring changes from trunk from the time the branch was created (r14280) up to the 1.8.0 release (r14525) back into the metadata journaling branch. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14863] Checking in code supporting metadata journaling in the serial case.John Mainzer2008-04-251-3/+5
| | | | | | | | | | | | | | | While this code doesn't break any of the existing tests, it HAS NOT been tested beyond that. Also mods needed to integrate the journaling code with Quincey's latest mods, and to adapt existing test code to slight changes caused by the addition of journaling. Finally, fixed an undefined variable bug in the HL code exposed by the journaling mods. Tested serial under Linux (Phoenix) and parallel under Linux (Kagiso).
* [svn-r14811] Description:Quincey Koziol2008-04-081-6/+6
| | | | | | | | | | Add "_META" suffix to FUNC_ENTER/FUNC_LEAVE API routines that can modify metadata in the file. This will give us a single place to change to recording the beginning & ending of transactions. Tested on: FreeBSD/32 6.2 (duty) Too simple to require h5committest
* [svn-r14228] Description:Quincey Koziol2007-11-011-2/+2
| | | | | | | | | | | | | | | | | Change H5Llink to H5Olink, which makes more sense. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14223] Description:Quincey Koziol2007-10-301-3/+47
| | | | | | | | | | | | | | | | | | Change existing H5Gget_info -> H5Gget_info_by_name and add new version of H5Gget_info, with simpler parameters, to better match new API routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14154] Description:Quincey Koziol2007-09-251-42/+0
| | | | | | | | | | | | | | | | | | | | Finish deprecating last H5G symbol (H5G_obj_t) - yay! Lots of misc. library fixes to remove confusion between links and objects. The tools could still use another pass, to remove h5trav_type_t type and make the correct distinction between links & objects. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode AIX/32 5.3 (copper) w/FORTRAN, w/parallel, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode
* [svn-r14125] Description:Quincey Koziol2007-08-291-1/+1
| | | | | | | Correct another typo in return value on error FAIL -> NULL Tested on: FreeBSD/32 6.2 (duty)
* [svn-r14115] Description:Quincey Koziol2007-08-281-39/+75
| | | | | | | | | | | | | | | | | Remove all plain calls to H5Gopen() from source, replacing them with either H5Gopen2(). Add test for H5Gopen1(). Reformatted several pieces of code, to clean them up. Tested on: FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew) Mac OS X/32 10.4.10 (amazon)
* [svn-r14104] Description:Quincey Koziol2007-08-231-1/+1
| | | | | | | | | | | | | Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate them, leaving only a few tame specimens in text files and comments. ;-) Tested on: Mac OS X/32 10.4.10 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (kagiso) Linux/64 2.6 (smirom) Solaris/32 5.10 (linew)
* [svn-r13682] Description:Quincey Koziol2007-04-181-0/+1
| | | | Run bin/reconfigure to update infrastructure files/information.
* [svn-r13636] Description:Quincey Koziol2007-04-111-403/+135
| | | | | | | | | | | | | | Change H5[D|G|T]<foo>_expand() "temporary" API routines to H5[D|G|T]<foo>2() "versioned" routines. Also added H5[D|G|T](create|commit)_anon() routines to continue to allow "anonymous" objects to be created in a file. Tested on: Mac OS X/32 10.4.9 (amazon) FreeBSD/32 6.2 (duty) FreeBSD/64 6.2 (liberty) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13498] Description:Quincey Koziol2007-03-121-1/+1
| | | | | | | | | Eliminate storing # of links in "link info" message, regenerate it when the object is opened instead. Tested on: FreeBSD/32 6.2 (duty) Mac OS X/32 10.4.8 (amazon)
* [svn-r13475] There's a configure issue linking szip's shared libraries when ↵Mike McGreevy2007-03-081-3/+6
| | | | | | | | | | | | running on kagiso. The static szip libraries are working as intended, but when shared szip libraries are present and intended for use they cannot be opened. A check has been implemented to test if shared szip libraries are functional on current platform. If they are not, and the user is trying to use them, szip is now disbaled and the user is informed. This issue occurs on kagiso, and the resolution was tested on kagiso.
* [svn-r13375] Description:Quincey Koziol2007-02-221-3/+7
| | | | | | | | | | Straighten out some of the code for handling superblocks, in preparation for revising the format of the latest version of the superblock before the beta release. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 6.2 (duty)
* [svn-r13353] Description:Quincey Koziol2007-02-201-1/+1
| | | | | | | | | | | | Checkpoint progress on H5Aiterate2(). Mark H5Aiterate() as deprecated. Various code cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13253] Updated all C and C++ style source code files with the THG ↵Albert Cheng2007-02-071-2/+3
| | | | | | | | | copyright notice. Tested platform: Kagiso only since it is only a comment block change. If it works in one machine, it should work in all, I hope. Still need to check the parallel build on copper.
* [svn-r13245] Added "superblock extension" object header to hold shared ↵James Laird2007-02-061-2/+7
| | | | | | | | | object header information, rather than storing it directly in the superblock. This should make future updates to the superblock much less painful. Tested on Windows, kagiso, and smirom.
* [svn-r13240] Description:Quincey Koziol2007-02-051-6/+6
| | | | | | | | | | More cleanups on the object header message handling code, to make it easier to work with and move forward on the creation order coding. Various other minor cleanups & warning fixes. Tested on: FreeBSD/32 6.2 (duty)
* [svn-r13068] Ran bin/reconfigure. Some of the scripts have been changed or ↵James Laird2006-12-181-6/+6
| | | | | | | | | haven't been run in a while, so many of the source files were updated with tracing macros, etc. No code changes by me. Tested on kagiso and smirom.
* [svn-r13045] Description:Quincey Koziol2006-12-121-2/+2
| | | | | | | | | | | | | | Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo> in order to accommodate indices on aspects of attributes as well as links. Add basic support for deleting attributes in dense storage (needs more support/tests for shared attributes in dense storage still). Misc. cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13016] Description:Quincey Koziol2006-12-041-4/+4
| | | | | | | | | | | Finish moving object header message routines into their own source code module, along with renaming them to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13015] Description:Quincey Koziol2006-12-041-2/+2
| | | | | | | | | | | Migrate more object header routines to use the H5O_msg_ prefix and put them into the src/H5Omessage.c code module. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r12994] Description:Quincey Koziol2006-11-291-6/+10
| | | | | | | | | | | | | | | Propagate object creation properties up into group, dataset and named datatype property lists, when those property lists are retrieved for existing objects in a file. Also, add H5Tget_create_plist() API routine, to allow named datatype property lists to be retrieved for named datatypes. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12977] Description:Quincey Koziol2006-11-271-83/+166
| | | | | | | | Added H5Gget_info[_by_idx] routines and deprecated H5Gget_num_objs routine. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12973] Description:Quincey Koziol2006-11-251-268/+3
| | | | | | | | | | | | | | | Finish removing library's internal code that uses H5G_get_objinfo() and retarget it at either getting the link information or the object information, as appropriate. (Still need to add user-level tests for H5Oget_info(), but since several internal components of the library depend on the internal version, it appears to be working correctly). Tested on: FreeBSD/32 4.11 (sleipnir) Linux/322.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12963] Description:Quincey Koziol2006-11-211-13/+71
| | | | | | | | | | Refactor internal code that retrieves the object's type to use the new H5O_type_t (which only definitions for object types, instead of links as well) instead of the older H5G_obj_t (which included links, etc.) Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12949] Description:Quincey Koziol2006-11-201-71/+0
| | | | | | | | | | | | | | | | Finish implementation of H5Literate() [still needs real tests] Clean up datatype macro warnings a bit more. Unify iterator callback macros and put up in public header file, with the iterator directions. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12932] Description:Quincey Koziol2006-11-171-7/+12
| | | | | | | | | | | | Basic support for H5Literate() routine. Still needs to be fleshed out and refactored to simplify. Also, needs tests. :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper) Mac OS X/32 10.4.8 (amazon)
* [svn-r12894] Description:Quincey Koziol2006-11-121-247/+26
| | | | | | | | | | | | Add H5Lget_name_by_idx routine & tests Move more H5G routines to deprecated API file Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & enable_compat1.6 AIX/32 5.? (copper) w/parallel & FORTRAN
* [svn-r12869] Description:Quincey Koziol2006-11-061-236/+1
| | | | | | | | Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's design discussion. Tested on: Linux/32 2.6 (chicago)
* [svn-r12842] Description:Quincey Koziol2006-11-021-49/+5
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12835] Description:Quincey Koziol2006-10-311-8/+6
| | | | | | | | | Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API changes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12832] Description:Quincey Koziol2006-10-301-1/+0
| | | | | | | | | | Clean up formatting and re-organize a bit... Tested on: Max OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12825] Description:Quincey Koziol2006-10-301-2/+28
| | | | | | | | Rudimentary support for creating creation order index (but not inserting links in it yet). Testedon: Mac OS X/32 10.4.8 (amazon)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-46/+24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12680] Description:Quincey Koziol2006-09-251-17/+61
| | | | | | | | | Review, revise & checkin in Peter's latest round of object copy changes, which add basic support for datasets & attributes with reference datatypes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12596] Refactored how external files are opened and closed.James Laird2006-08-181-73/+112
| | | | | | | | Object header locations (H5O_loc_t's) can now "hold open" a file and decrement its open object count when they close. This means that locations (H5O_loc_t's and H5G_loc_t's) should always be freed. Added more thorough tests to ensure that external files are closed.
* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-41/+172
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r12474] Quincey Koziol2006-07-151-5/+2
| | | | | | | | Clean up some compiler warnings. Tested on: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12461] Cleaned up the names of some internal API functions, cleaned up ↵starfire2006-07-101-2/+2
| | | | | | | | | comments, fixed a few tests that used incorrect names for H5L APIs (formerly hidden behind H5_GROUP_REVISION ifdefs Mostly cosmetic changes, tested on mir.
* [svn-r12452] Purpose:James Laird2006-07-051-939/+71
| | | | | | | | | | | | | | | | | | | | | | Feature Description: Revised Link APIs. Solution: New link APIs use H5L* H5*create_expand do not create links to the objects created; this must be done manually with H5Llink. Added APIs to link an object given its ID (H5Llink), to copy links (H5Lcopy), and changed creation APIs (H5Lcreate_hard and H5Lcreate_soft) and query API (H5Lget_linkinfo instead of H5Gget_objinfo). All old APIs are still supported in H5Gdeprec.c . Platforms tested: sol, mir, copper Misc. update: Forgot to update MANIFEST and release docs. Will do after checkin.
* [svn-r12440] Purpose:Quincey Koziol2006-06-271-20/+20
| | | | | | | | | | | Code cleanup Description: Trim trailing whitespace in Makefile.am and C/C++ source files to make diffing changes easier. Platforms tested: None necessary, whitespace only change
* [svn-r12439] Purpose:Quincey Koziol2006-06-261-14/+21
| | | | | | | | | | | | | New feature Description: Check in Peter's code to add support for "shallow copy", "create intermediate groups", "no attributes" and "expand soft links" support. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (chicago) w/ & w/o group-revision enabled h5committest
* [svn-r12313] Purpose:Quincey Koziol2006-04-291-2/+2
| | | | | | | | | | | Code cleanup Description: Clean up a few minor compiler warnings Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir)
* [svn-r12254] Purpose:Quincey Koziol2006-04-141-22/+13
| | | | | | | | | | | | | | Anti-feature Description: Revert changes to H5G_stat_t struct, to make it compatible with the 1.6.x branch again. The information that was added to the H5G_stat_t struct will be reported through other API routines. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & Fortran Solaris 2.9 (shanti)
* [svn-r12221] Purpose:Quincey Koziol2006-04-101-5/+39
| | | | | | | | | | | | | | | "Hide" file format changes (for now) Description: Add ifdef's (controlled by the --enable-group-revision configure flag) to disable group revision changes to the file format, in order to allow alpha release to go ahead without releasing an unsupported version into the wild. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 32-bit (heping) Linux 2.4 64-bit (mir) Solaris 2.9 (shanti)
* [svn-r12191] Purpose:Quincey Koziol2006-04-021-6/+8
| | | | | | | | | | | | | Bug fix Description: Correct the handling of the group creation property list when copying objects with the "create intermediate groups" flag. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest (once I pay attention to the compiler warnings... :-)
* [svn-r12189] Purpose:Quincey Koziol2006-04-011-40/+152
| | | | | | | | | | | | | | New/expanded features Description: Check in Peter's changed for the object copy code: - Allow/fix copying datasets using named variable-length datatypes - Start adding framework for property list to control how object copying occurs. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11838] Purpose:Quincey Koziol2005-12-261-114/+116
| | | | | | | | | | | | | | | | Bug fix Description: Retrieving an object's name could fail (in various ways) under certain circumstances (mostly having to do with mounted files). Solution: Re-write & simplify "get object name" code to fix error in a better way than adding yet another hack to the previous pile of hacks... :-) Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11758] Purpose:Quincey Koziol2005-12-041-41/+0
| | | | | | | | | | | | | New feature Description: Add in a combination of Peter's & my code to support copying variable-length data from one file to another, although currently only supported with contiguous data storage. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
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